BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G27425.1
Length=318
Score E
Sequences producing significant alignments: (Bits) Value
Ahg936497 jgi|Araly1|936497|scaffold_500688.1 342 7e-94
> Ahg936497 jgi|Araly1|936497|scaffold_500688.1
Length=303
Score = 342 bits (185), Expect = 7e-94
Identities = 223/241 (93%), Gaps = 4/241 (2%)
Strand=Plus/Plus
Query 80 AGAAAAATTAT-TGTTCGAGAACCAACATAGACTATATACCGGGATGTTTCCATGCGTTG 138
||||||||| | |||||||||||||||||||||| |||||| ||||||||||||||||||
Sbjct 40 AGAAAAATT-TGTGTTCGAGAACCAACATAGACTTTATACCAGGATGTTTCCATGCGTTG 98
Query 139 CAATTAGCGTATAACAAAGATTATAGTCTCCTAACAAGAAATTGTTGCAGAGCAGTGTTT 198
|||||||| ||||||||| |||| |||| ||||||||||||||||||||||||||||||
Sbjct 99 CAATTAGCATATAACAAAAATTACAGTCGCCTAACAAGAAATTGTTGCAGAGCAGTGTTC 158
Query 199 TCACTTCCTACTACTTGTGCCTTGCTTGTCTATCCTGGCAAAACTTACCCTATTACTACC 258
||||||||||||||||||| |||||||||||||||||| ||||||||||||||||| |||
Sbjct 159 TCACTTCCTACTACTTGTGTCTTGCTTGTCTATCCTGGAAAAACTTACCCTATTACCACC 218
Query 259 TTTAGATTAATTTGTATTTATAGCGATCCTCTTCCAGCAATGT-CTCCATTAAGTCTATA 317
|| |||||||||||||||||||||||||||| |||||||| || |||||| || ||||||
Sbjct 219 TTCAGATTAATTTGTATTTATAGCGATCCTCCTCCAGCAA-GTTCTCCATCAATTCTATA 277
Query 318 A 318
|
Sbjct 278 A 278
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 11217743166
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5