BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G27440.1
Length=1398
Score E
Sequences producing significant alignments: (Bits) Value
Ahg896655 jgi|Araly1|896655|Al_scaffold_0005_621 2154 0.0
> Ahg896655 jgi|Araly1|896655|Al_scaffold_0005_621
Length=1395
Score = 2154 bits (1166), Expect = 0.0
Identities = 1316/1391 (95%), Gaps = 0/1391 (0%)
Strand=Plus/Plus
Query 1 ATGGAGAAATTATCTAATGGCGTTAGAGATCACTGTTTGATCAGTGACTATGTTTCTCCT 60
|||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1 ATGGAGCAATTATCTAATGGCGTTAGAGATCACTGTTTGATCAGTGACTATATTTCTCCT 60
Query 61 TCAGCTCCTGCTCCTCTTAAACAACCTTTCGTGATCGGTGTTGCCGGAGGAACCGCCTCC 120
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 61 TCAGCTCCTGCTCCTCTTAAACAGCCTTTCGTGATCGGTGTTGCCGGAGGAACCGCCTCC 120
Query 121 GGGAAGACGACGGTTTGCAATATGATCATGTCTCAGTTACATGATCAACGTGTTGTCCTT 180
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 121 GGGAAGACGACGGTTTGCAATATGATCATGTCTCAGTTACACGATCAACGTGTTGTCCTT 180
Query 181 GTTAACCAAGATTCGTTTTACCACTCGCTTACTAAGGAGAAATTGAACAAGGTTCATGAA 240
|| ||||||||||||||||| || ||||||| | |||||||| |||| ||||||||||||
Sbjct 181 GTGAACCAAGATTCGTTTTATCATTCGCTTAGTGAGGAGAAACTGAAGAAGGTTCATGAA 240
Query 241 TATAACTTCGATCATCCTGATGCATTCAACACTGAGGTTTTACTTTCATGTATGGAGAAG 300
||||| |||||||||||||| ||||||||||| ||||| || ||||| |||||||||||
Sbjct 241 TATAATTTCGATCATCCTGACGCATTCAACACCGAGGTGTTGCTTTCGTGTATGGAGAAA 300
Query 301 TTACGATCTGGACAACCAGTGAACATTCCGAGTTACGATTTCAAAATCCATCAGAGCATT 360
|||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct 301 CTACGATCTGGACAACCAGTGAACATTCCGAGTTATGATTTCAAAATCCACCAGAGCATT 360
Query 361 GAATCATCAAGTCCGGTTAATCCTGGTGATGTAATCATCTTAGAGGGAATCCTAGTTCTT 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 GAATCATCAAGTCCGGTTAATCCTGGTGATGTAATCATCTTAGAGGGAATCCTAGTTCTT 420
Query 421 AATGATCCTCGAGTTCGTGATCTCATGAACATGAAGATCTTTGTCGATACAGATGCTGAT 480
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 421 CATGATCCTCGAGTTCGTGATCTCATGAACATGAAGATCTTTGTTGATACAGATGCTGAT 480
Query 481 GTACGACTCTCGAGAAGAATACAGCGTGACACCGTCGAGAGAGGAAGAAACATACAGAAT 540
||||| || |||||||||||||| ||||| ||||||||||||||||||||||| || |||
Sbjct 481 GTACGGCTTTCGAGAAGAATACAACGTGATACCGTCGAGAGAGGAAGAAACATCCAAAAT 540
Query 541 GTGCTTGAACAGTATACTAAGTTTGTGAAGCCGAGCTTCGATGAATACATTCAGCCGTCG 600
||||||||||||||||| |||||||||||||| || || ||||||| ||| ||||| |||
Sbjct 541 GTGCTTGAACAGTATACAAAGTTTGTGAAGCCTAGTTTTGATGAATTCATCCAGCCATCG 600
Query 601 ATGAAGTATGCTGATATAATCATTCCACGAGGAGGAGATAATGATGTTGCAATTGATCTC 660
|||||||| ||||| ||||||||||| ||||||||||| ||||||||||||||||| ||
Sbjct 601 ATGAAGTACGCTGACATAATCATTCCTCGAGGAGGAGACAATGATGTTGCAATTGACCTT 660
Query 661 ATTGTACAACATATTCGTACAAAGCTGTGCCAACACAATCTCTGTAAGATATACTCAAAC 720
||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 ATTGTTCAACATATCCGTACAAAGCTGTGCCAACACAATCTCTGTAAGATATACTCAAAC 720
Query 721 ATCTTCATCATATCTTCAACATTCCAGATCAAAGGAATGCATACTCTTATCCGTGATATC 780
||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 721 ATCTTCATCATATCTTCAACATTCCAGATCAAAGGAATGCATACTCTTATCCGCGACATC 780
Query 781 AACACAACCAAGCATGATTTCGTCTTCTACGCTGACCGATTGATTCGACTGGTCGTGGAA 840
|||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 781 AACACAACAAAGCATGATTTCGTCTTTTACGCTGACCGATTGATTCGACTGGTCGTGGAA 840
Query 841 CATGGACTTGGTCATCTTCCTTTCACAGAGAAACAGATCACAACTCCAACAGGGTCAGTG 900
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 841 CATGGACTTGGTCATCTTCCTTTCACAGAGAAACAGATCACCACTCCAACAGGGTCAGTG 900
Query 901 TACACTGGAGTCGACTTCTGCAAGAGATTGTGCGGTGTCTCAGTGATCAGAAGTGGAGAA 960
|||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 901 TACACTGGAGTCGACTTCTGCAAGAGATTGTGTGGCGTCTCAGTGATCAGAAGTGGAGAA 960
Query 961 AGCATGGAAAACGCTCTAAGAGCTTGCTGCAATGGGATTAAGATTGGTAAAATCCTCATT 1020
|||||||| || || |||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct 961 AGCATGGAGAATGCACTAAGAGCTTGCTGCAATGGAATTAAGATTGGTAAAATTCTCATT 1020
Query 1021 CACAGAGAGAATAACGATGGTCGTCAGTTAATATATGAGAAGTTGCCAAAAGATATCTCA 1080
|||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1021 CACAGAGAAAATAACGATGGTCGTCAGTTAATATATGAGAAGTTGCCGAAAGATATCTCA 1080
Query 1081 AGCAGACATGTCTTCCTCCTTGACCCTGTTCTAGCATCAGGCTACTCTGCAGTTAAAGCT 1140
||||||||||||||||||||||||||||||||||| ||||| ||||| ||||| ||||||
Sbjct 1081 AGCAGACATGTCTTCCTCCTTGACCCTGTTCTAGCTTCAGGATACTCGGCAGTGAAAGCT 1140
Query 1141 ATAACTTTGCTTCTAAGCAAGGGAGTTCCAGAATCACATATCATCTTTCTCAATCTTATA 1200
|||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1141 ATAACTTTGCTTCTGAGCAAGGGTGTTCCAGAATCACATATCATCTTTCTCAATCTTATA 1200
Query 1201 GCAGCACCTCAAGGCATCCACGCGCTTTGCAAGAAATTCCCGATGCTAAAGATTGTGACA 1260
|||||||||||||| ||||| || || |||||||||||||| |||||||||||||||||
Sbjct 1201 GCAGCACCTCAAGGTATCCATGCACTCTGCAAGAAATTCCCAATGCTAAAGATTGTGACT 1260
Query 1261 TCGGAAATCGATTCATCTCTCAATGAGGACTCACGTGTGATTCCAGGCTTGGGAGAATTT 1320
|||||||||||| |||| |||||||||||||||||||||||||||||| |||||||||||
Sbjct 1261 TCGGAAATCGATGCATCCCTCAATGAGGACTCACGTGTGATTCCAGGCATGGGAGAATTT 1320
Query 1321 GCAGACCGTTACTTTGGGACAAACAACATTAATTCAAAAGTATCAAGCTTGTCTACAAAT 1380
||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||
Sbjct 1321 GCAGACCGTTACTTTGGTACAAACAACATTAATTCAAAAGTATCAAGCTTGTCTGCAAAT 1380
Query 1381 CTCAAGTTAAG 1391
|||||||||||
Sbjct 1381 CTCAAGTTAAG 1391
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52259816140
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5