BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G27460.1
Length=1322
Score E
Sequences producing significant alignments: (Bits) Value
Ahg322874 jgi|Araly1|322874|fgenesh1_pm.C_scaffold_5000418 1218 0.0
Ahg330454 jgi|Araly1|330454|fgenesh1_pm.C_scaffold_7002681 780 0.0
> Ahg322874 jgi|Araly1|322874|fgenesh1_pm.C_scaffold_5000418
Length=840
Score = 1218 bits (659), Expect = 0.0
Identities = 783/838 (93%), Gaps = 27/838 (3%)
Strand=Plus/Plus
Query 266 ATGTCGTCGTCGCCGGACATTGCCGGAATCTTAGATAATACGAAGGAGCTTGATCGGTTA 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGTCGTCGTCGCCGGACATTGCCGGAATCTTAGATAATACGAAGGAGCTTGATCGGTTA 60
Query 326 AGAAAAGAACAAGAGGAAGTTCTTGTGGAGATTAATAAGATGCATAAGAAGCTTCAAGCT 385
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 AGGAAAGAACAAGAGGAAGTTCTTGTGGAGATTAATAAGATGCATAAGAAGCTTCAAGCT 120
Query 386 ACGCCGGAGATAGTTGAGAAGCCTGGTGATATTTCATTGTCAAAGCTTAAAAATTTGTAC 445
||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 121 ACGCCTGAGATAGTTGAGAAGCCTGGTGATACTTCATTGTCAAAGCTTAAAAATTTGTAC 180
Query 446 ATTCAAGCAAAAGAGCTTTCAGAAAGTGAAGTAACCGTTTCAAATATTCTGCTTACTCAG 505
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 181 ATTCAAGCAAAAGAGCTTTCAGAAAGTGAAGTAACCGTTTCAAACATTCTGCTTACTCAG 240
Query 506 TTGGATTCTCTGCTTCCATCTGGACCAACTGGGCAACAACGCAGAAAATTAGAAGGCAAC 565
|||||| | |||||||||||||||||||| ||||||||||| ||||||||||||||||||
Sbjct 241 TTGGATGCCCTGCTTCCATCTGGACCAACCGGGCAACAACGTAGAAAATTAGAAGGCAAC 300
Query 566 GAACAGAAGAGAAAGAGAATGAAAGTAGATACAGATGTAACAAGAGTTTCTCCTTCCATG 625
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 301 GAACAGAAGAGAAAGAGAATGAAAGTAGATTCAGATGTAACAAGAGTTTCTCCTTCCATG 360
Query 626 AGAAATCAAATCGAGGCATATGCTAGTCTAAAGGGTGAACAGGTTGCTGCAAGAGTCACA 685
||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 361 AGAAATCAAATCGAGGCATATGCCAGTCTTAAGGGTGAACAGGTTGCTGCAAGAGTCACA 420
Query 686 GCTGAAGATGCCGAGAAGGATGAATGGTTTGTGGTGAAAGTTATTCACTTCGACAGAGAA 745
|| || ||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 421 GCCGAGGATGCCGAGAAGGATGAATGGTTTGTGGTAAAAGTTATTCACTTCGACAGAGAA 480
Query 746 ACAAAAGAAGTTGAAGTACTTGATGAAGAACCAGGAGATGATGAAGAAGGAGGTGGCCAG 805
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 ACAAAAGAAGTTGAAGTACTTGATGAAGAACCAGGAGATGATGAAGAAGGAGGTGGCCAG 540
Query 806 AGGACGTATAAACTATCAATGTCATGTATTTTACCGTTTCCAAAACGGAATGATCCTTCA 865
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 AGGACATATAAACTATCAATGTCATGTATTTTACCGTTTCCAAAACGGAATGATCCTTCA 600
Query 866 AGCACACAAGAGTTTATACCAGGGAAACACGTCTTAGCTGTATATCCAGGAACCACAGCC 925
||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||
Sbjct 601 AGCACACAAGAGTTTCTACCAGGGAAACACGTGTTAGCTGTATATCCAGGAACCACAGCC 660
Query 926 CTCTACAAGGCAACTGTTATAAGTACCCCACGAAAG---AGGAAA-T-CTG-ACGAGT-- 977
||||||||||||||||| |||||||||||||||||| || | | ||| || | |
Sbjct 661 CTCTACAAGGCAACTGTAATAAGTACCCCACGAAAGGTTAGCTATCTTCTGCACCATTTC 720
Query 978 A--CT--TG-CTAGAAT-T--T-G--A---T--GATGATGA--A-GAAGACGGAGCATTA 1018
| || | | | ||| | | | | | |||||||| | |||||||||||||||
Sbjct 721 AAGCTCATTTCAACAATGTACTTGCTAGAATTTGATGATGATGAAGAAGACGGAGCATTA 780
Query 1019 CCTCAAAGAACAGTGCCATTCCACAAAGTGGTAGCTTTACCAGAAGGCCATCGCCAGT 1076
||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||
Sbjct 781 CCTCAAAGAACAGTGCCATTCCACAAAGTTGTAGCTTTACCAGAAGGCCACCGCCAGT 838
> Ahg330454 jgi|Araly1|330454|fgenesh1_pm.C_scaffold_7002681
Length=876
Score = 780 bits (422), Expect = 0.0
Identities = 611/701 (87%), Gaps = 17/701 (2%)
Strand=Plus/Plus
Query 271 GTCGTCGCCGGACATTGCCGGAA-TCTTAGATAATACGAAGGAGCTTGATCGGTTAAGAA 329
|||||| || ||||||| ||||| || | || || |||||||| |||||||||||||| |
Sbjct 3 GTCGTCACCAGACATTGTCGGAATTC-TGGAAAACACGAAGGAACTTGATCGGTTAAGGA 61
Query 330 AAGAACAAGAGGAAGTTCTT-GTGGAGATTAATAAGATGCATAAGAAGCTTCAAGCTACG 388
|||||||||| |||||| || || ||||| |||||||||||||| |||||||||||| |
Sbjct 62 AAGAACAAGAAGAAGTT-TTGGTTGAGATCAATAAGATGCATAAAAAGCTTCAAGCTTCT 120
Query 389 CCGGAGATAGTTGAGAAGCCTGGTGATATTTCATTGTCAAAGCTTAAAAATTTGTACATT 448
|| ||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||
Sbjct 121 CCTGAGATAGTTGAGAAGCCTGGTGATATTTCATTGGCAAAGCTTAAGAATTTGTACATT 180
Query 449 CAAGCAAAAGAGCTTTCAGAAAGTGAAGTAACCGTTTCAAATATTCTGCTTACTCAGTTG 508
||||| |||||||| || |||| |||||||||||| || || ||| |||||||||| |||
Sbjct 181 CAAGCGAAAGAGCTCTCCGAAAATGAAGTAACCGTATCGAACATTTTGCTTACTCAATTG 240
Query 509 GATTCT-CTGCTTCCATCTGGACCAACTGGGCAACAACGCAGAAAATT---AGAAGGCAA 564
|||| | |||||||||| ||||||||| ||||| ||| | |||||||| |||||||||
Sbjct 241 GATT-TGCTGCTTCCATATGGACCAACAGGGCAGCAAAGAAGAAAATTAGGAGAAGGCAA 299
Query 565 CGAACAGAAGAGAAAGAGAATGAAAGTAGATACAGATGTAACAAGAGTTTCTCCTTCCAT 624
|| |||||||| ||||| |||||||| ||| ||||||||| |||| |||||||||||||
Sbjct 300 TGATCAGAAGAGGAAGAGGATGAAAGTTGATTCAGATGTAATAAGACTTTCTCCTTCCAT 359
Query 625 GAGAAATCAAATCGAGGCATATGCTAGTCTAAAGGGTGAACAGGTTGCTGCAAGAGTCAC 684
||||||||||||||| |||||||| ||| |||||||||||||||||||||||||||| ||
Sbjct 360 GAGAAATCAAATCGAAGCATATGCAAGTTTAAAGGGTGAACAGGTTGCTGCAAGAGTTAC 419
Query 685 AGCTGAAGA-TGCCGAGAAGGATGAATGGTTTGTGGTGAAAGTTATTCACTTCGACAGAG 743
|| | ||| ||| || |||||||||||||||||||| ||||| ||||||||||| ||||
Sbjct 420 TGCAG-AGAGTGCTGATAAGGATGAATGGTTTGTGGTTAAAGTAATTCACTTCGATAGAG 478
Query 744 AAACAAAAGAAGTTGAAGTACTTGATGAAGAACCAGGAGATGATGAAGAAGGAGGTGGCC 803
||||||||||||||||||||||||||||||||||||||||||||||||||||| | || |
Sbjct 479 AAACAAAAGAAGTTGAAGTACTTGATGAAGAACCAGGAGATGATGAAGAAGGAAGCGGTC 538
Query 804 AGAGGACGTATAAACTATCAATGTCATGTATTTTACCGTTTCCAAAACGGAATGATCCTT 863
||||||| ||||| | |||||||||| |||||||| ||||| ||||| || |||||||
Sbjct 539 AGAGGACCTATAAGTTGCCAATGTCATGCATTTTACCATTTCCCAAACGTAACGATCCTT 598
Query 864 C-AAGCACACAAGAGTTTATACC-AGGGAAACACGTCTTAGCTGTATATCCAGGAACCAC 921
| || ||| ||||||||| | | || ||||||||||||||||||||||| || || ||
Sbjct 599 CGAA-CACCCAAGAGTTTCCAACGAGT-AAACACGTCTTAGCTGTATATCCCGGGACAAC 656
Query 922 AGCCCTCTACAAGGCAACTGTTA-TAAGTACCCCACGAAAG 961
||| |||||||| |||||||| | |||||||||||||||||
Sbjct 657 AGCACTCTACAAAGCAACTGT-AGTAAGTACCCCACGAAAG 696
Score = 126 bits (68), Expect = 4e-28
Identities = 90/101 (89%), Gaps = 0/101 (0%)
Strand=Plus/Plus
Query 976 GTACTTGCTAGAATTTGATGATGATGAAGAAGACGGAGCATTACCTCAAAGAACAGTGCC 1035
||||||||| ||||| || |||||||| ||| | |||||||| ||||||||||| || ||
Sbjct 774 GTACTTGCTTGAATTCGACGATGATGAGGAAAATGGAGCATTGCCTCAAAGAACTGTACC 833
Query 1036 ATTCCACAAAGTGGTAGCTTTACCAGAAGGCCATCGCCAGT 1076
||||||||||||||||||||||||||||| ||||||||||
Sbjct 834 TTTCCACAAAGTGGTAGCTTTACCAGAAGGTCATCGCCAGT 874
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49445423349
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5