BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G27520.1
Length=999
Score E
Sequences producing significant alignments: (Bits) Value
Ahg347129 jgi|Araly1|347129|fgenesh1_pg.C_scaffold_5000521 719 0.0
> Ahg347129 jgi|Araly1|347129|fgenesh1_pg.C_scaffold_5000521
Length=600
Score = 719 bits (389), Expect = 0.0
Identities = 520/581 (90%), Gaps = 18/581 (3%)
Strand=Plus/Plus
Query 87 TCC-ATAGACGGAGACGAAGATTGGGAA-TGTTACGAA-GACGATGGCTTCGTTTACAAT 143
||| |||||||||||||||||||||||| | |||| || ||||| ||||||||||||||
Sbjct 30 TCCTATAGACGGAGACGAAGATTGGGAACT-TTAC-AACGACGACGGCTTCGTTTACAAA 87
Query 144 CGAAAAAAGCGAACCCGTTTCGCCGACGCTGAAGAAACATCAAAACCGCCGGATCCGGAG 203
|| |||||||||| |||| |||||||||||||||||||||| |||||||||||||| |||
Sbjct 88 CGGAAAAAGCGAAGCCGTATCGCCGACGCTGAAGAAACATCGAAACCGCCGGATCCAGAG 147
Query 204 TTAGATCGGGTGGTAGAAGAGAGGAATCGAAGGATACGGAAGAAGAGATTACTGGTGAAG 263
||||||| ||||||||| |||||||||||||||||||||||||||||| |||||||||||
Sbjct 148 TTAGATCCGGTGGTAGAGGAGAGGAATCGAAGGATACGGAAGAAGAGAATACTGGTGAAG 207
Query 264 CTCAAAAGAAAGTACCAGAGTGAGATCGACCAGTGGGAGATTTTATCGAATAGTTTCAAT 323
||||||||||||||||||||||||||||| |||||||||||||| ||||| ||||| |||
Sbjct 208 CTCAAAAGAAAGTACCAGAGTGAGATCGAGCAGTGGGAGATTTTGTCGAACAGTTTGAAT 267
Query 324 GCTATGCAAGAGAAAGCAGATCGATTTCAAACGGCGCAAAGAGAAGAGAGGTTAAATGCG 383
||||||||| |||||||||||||||||||||| |||| ||||||||| || ||||||
Sbjct 268 TCTATGCAAGTGAAAGCAGATCGATTTCAAACGACGCAGCGAGAAGAGATGTCAAATGCT 327
Query 384 AACGAAACGATGTCGTTTCCTGGGAATTCTTCCTCTAC-AACAGAAGGAGGC-CGAGAAT 441
|| || ||||| |||||||||| |||| |||||| ||| || ||||||| || |||||||
Sbjct 328 AAAGAGACGATCTCGTTTCCTGAGAATGCTTCCTATACTAA-AGAAGGA-GCTCGAGAAT 385
Query 442 TTGGCGGAGAAGATGCTTCTAAGTCGCCGTCGTCTATGCTCGACCAACTTCTTTTTACGG 501
|||| ||||||||||||||| | ||||||||||||||||||||||||||||||||| ||
Sbjct 386 TTGGTGGAGAAGATGCTTCT--G-CGCCGTCGTCTATGCTCGACCAACTTCTTTTTATGG 442
Query 502 TGGAAAG-ACAAGAAGCGGTAATCAACGAAGTCTCAAAGCTATGTGAAGTTA-CAGAGAA 559
|| ||| |||||||||||| || || || ||||| ||| | ||||||| || |||||||
Sbjct 443 CGG-AAGCACAAGAAGCGGTGATTAATGACGTCTCGAAGTTGTGTGAAG-TAGCAGAGAA 500
Query 560 CATATGTAGAGTGGAAGAAGAAGA-AACGAAGCAGTCCTTCTTTGATCTTCCCATATGGA 618
|||||||||| | ||||||||||| || || |||||||||||||||||||||||||||||
Sbjct 501 CATATGTAGAATTGAAGAAGAAGAGAA-GAGGCAGTCCTTCTTTGATCTTCCCATATGGA 559
Query 619 GCTCACCAACGGATCTAATGGCATCGCTTTGTGGTGATTAA 659
|||||||||||||||||||| | ||||||||||||||||||
Sbjct 560 GCTCACCAACGGATCTAATGACGTCGCTTTGTGGTGATTAA 600
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37131721158
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5