BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G27530.1
Length=3148
Score E
Sequences producing significant alignments: (Bits) Value
Ahg484543 jgi|Araly1|484543|fgenesh2_kg.5__535__AT3G27530.1 4802 0.0
> Ahg484543 jgi|Araly1|484543|fgenesh2_kg.5__535__AT3G27530.1
Length=3088
Score = 4802 bits (2600), Expect = 0.0
Identities = 2947/3112 (95%), Gaps = 33/3112 (1%)
Strand=Plus/Plus
Query 8 ATCGAACGGTTTATCAGCTCTTCTGACTTTGCTTGAATAGATCGGTCAGGTGAAAAACAC 67
||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1 ATCGAACGGTTTATCAGCTCTTCTGACTTTGCTTGAACAGATCGGTCAGGT--------- 51
Query 68 GAGAGACTCTGTGAAGAAGAGATCGCTGCGATCTATCACGGTTCCATTGCCTGGAGGA-T 126
|| | ||||||||||||||||||||||||||| |||||||||||| ||||| || |
Sbjct 52 --GA-A---TGTGAAGAAGAGATCGCTGCGATCTATAACGGTTCCATTGGCTGGA-GATT 104
Query 127 TCTTCTTCCTTGTTTTGATCTTGTTCTTATCAACAT-AGTCTGTGT-GA-TTTTATTGGC 183
|| ||||||||||||||||||||||| ||| |||| ||||||||| | |||| ||||
Sbjct 105 TCATCTTCCTTGTTTTGATCTTGTTCGTAT-TACATAAGTCTGTGTAAATTTTTCGTGGC 163
Query 184 TATAACGAGATATGGATTTGGCATCCCGTTATAAGGGGGTTGTTGGAATGGTTTTTGGCG 243
|| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 164 TA-AA-GAGATATGGATTTGGCATCCCGTTATAAGGGGGTTGTTGGAATGGTTTTTGGCG 221
Query 244 ACAATCAATCTTCTAATGAAGACAGTTACATTCAACGCCTGCTGGATCGTATAAGTAATG 303
||||||| ||||| |||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 222 ACAATCAGTCTTCGAATGAAGACAGTTACATTCAACGCCTGCTGGACCGTATAAGTAATG 281
Query 304 GTACCTTGCCTGACGATAGGAGAACTGCTATAGTAGAACTTCAGTCTGTTGTCGCAGAAA 363
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 282 GTACCTTGCCTGACGATAGGAGAACTGCTATAGTAGAACTTCAGTCTGTTGTAGCAGAAA 341
Query 364 GTAATGCTGCTCAATTAGCTTTTGGAGCAGCCGGATTTCCTGTGATAGTGGGCATCCTAA 423
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 342 GTAATGCTGCTCAATTAGCTTTTGGAGCAGCCGGATTTCCTGTGATAATGGGCATCCTAA 401
Query 424 AGGATCAACGAGATGATCTTGAAATGGTTCGAGGTGCTTTAGAAACTCTTCTTGGCGCTC 483
|||| || || |||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 402 AGGACCAGCGGGATGATGTTGAAATGGTTCGAGGTGCTTTAGAAACTCTTCTTGGCGCTC 461
Query 484 TAACGCCAATCGATCATGCAAGGGCACAGAAGACTGAAGTCCAGGCAGCTCTTATGAACT 543
|||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||
Sbjct 462 TAACGCCAATCGATCATGCAAGGGTACAGAAGACTGAAGTCCATGCAGCTCTTATGAACT 521
Query 544 CCGACTTGCTCTCCCGTGAAGCTGAAAATATCACTCTTCTTTTGAGTTTGCTGGAGGAAG 603
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 522 CCGACTTGCTCTCCCGTGAAGCTGAAAATATCACTCTTCTTTTAAGTTTGCTGGAGGAAG 581
Query 604 AAGACTTTTATGTTCGATATTACACTCTTCAGATTTTGACAGCTCTGCTTATGAACTCTC 663
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 582 AAGACTTTTATGTTCGATATTACACTCTTCAGATTTTGACAGCTCTGCTTATGAATTCTC 641
Query 664 AAAACAGGTTGCAGGAAGCTATTTTGACCACTCCTCGCGGTATTACTCGGCTCATGGATA 723
|||||||||||||||||||||||||||| ||||||||||| || ||||| |||||||| |
Sbjct 642 AAAACAGGTTGCAGGAAGCTATTTTGACAACTCCTCGCGGCATAACTCGACTCATGGACA 701
Query 724 TGCTAATGGATAGAGAGGTAATCCGGAACGAGGCTTTGTTGCTTCTTACGCACTTGACTC 783
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 702 TGCTAATGGATAGAGAGGTAATCCGGAACGAGGCTTTGTTGCTTCTTACGCACTTGACTC 761
Query 784 GTGAAGCAGAGGAGATCCAAAAAATTGTTGTCTTTGAAGGTGCTTTTGAAAAGATTTTTA 843
||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||
Sbjct 762 GTGAAGCAGAGGAGATCCAAAAAATCGTTGTCTTTGAAGGTGCATTTGAAAAGATTTTTA 821
Query 844 GCATCATTAAGGAGGAAGGGGGGTCAGATGGCGATGTGGTTGTGCAGGACTGTCTGGAGT 903
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 822 GCATCATTAAGGAAGAAGGGGGGTCAGATGGCGATGTGGTTGTGCAGGACTGTCTGGAGT 881
Query 904 TGTTGAACAATCTTCTTCGCAGCAGTTCATCTAACCAGATATTACTAAGGGAAACCATGG 963
||||||||||||||||||||||||||||||| ||||||||| |||||||||| |||||||
Sbjct 882 TGTTGAACAATCTTCTTCGCAGCAGTTCATCAAACCAGATACTACTAAGGGAGACCATGG 941
Query 964 GTTTTGAACCTATCATTTCAATTCTAAAACTGCGAGGGATTACATATAAGTTCACCCAGC 1023
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 942 GTTTTGAACCGATCATTTCAATTCTAAAACTGCGAGGGATTACATATAAGTTCACCAAGC 1001
Query 1024 AAAAGACTGTTAATCTGCTTAGTGCACTGGAGACCATCAATATGCTGATCATGGGACGTG 1083
|||||||||||||||| ||||||||||||||||| || |||||||||||||||||| |||
Sbjct 1002 AAAAGACTGTTAATCTACTTAGTGCACTGGAGACAATTAATATGCTGATCATGGGAGGTG 1061
Query 1084 CAGACACGGAGCCTGGAAAAGATTCAAACAAGCTGGCAAATCGAACAGTTTTAGTTCAGA 1143
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1062 CAGACACGGAGCCTGGAAAAGATTCAAACAAGCTGGCAAATAGAACAGTTTTAGTTCAGA 1121
Query 1144 AAAAACTGCTAGACTACCTACTGATGTTGGGTGTTGAAAGCCAATGGGCGCCTGTTGCTG 1203
|||||||||||||| |||| |||||||| |||||||||||||||||||||||||||||||
Sbjct 1122 AAAAACTGCTAGACCACCTTCTGATGTTAGGTGTTGAAAGCCAATGGGCGCCTGTTGCTG 1181
Query 1204 TTCGCTGCATGACATTTAAATGCATTGGAGATCTAATTGATGGACATCCTAAGAACCGTG 1263
|||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||
Sbjct 1182 TTCGCTGCATGACATTTAAATGCATTGGAGATCTAATTGATGGACACCCCAAGAACCGTG 1241
Query 1264 ATATCCTTGCTAGCAAAGTTCTTGGTGAAGATCGGCAAGTAGAACCTGCACTCAATTCTA 1323
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1242 ATATCCTTGCTAGCAAAGTTCTTGGTGAAGATCGGCAAGTAGAACCTGCACTCAATTCTA 1301
Query 1324 TCCTCCGGATCATTTTACAGACGTCCAGTATTCAAGAGTTTGTTGCAGCTGATTACGTTT 1383
||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1302 TCCTCAGGATCATTTTACAGACGTCCAATATTCAAGAGTTTGTTGCAGCTGATTACGTTT 1361
Query 1384 TCAAGACATTCTGTGAGAAAAATACTGAGGGTCAAACAATGCTAGCTTCGACTTTAATAC 1443
||||||| ||||||||||||||| | ||||||||||||||||||||||||||||||||||
Sbjct 1362 TCAAGACGTTCTGTGAGAAAAATCCCGAGGGTCAAACAATGCTAGCTTCGACTTTAATAC 1421
Query 1444 CTCAACCACATCCCACATCCCGAGATCATCTAGAAGATGATGTTCACATGTCATTTGGAA 1503
||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1422 CTCAACCACATCCCACAGCCCGAGATCCTCTAGAAGATGATGTTCACATGTCATTTGGAA 1481
Query 1504 GTATGTTGTTACGAGGCCTTTGTTCTGGTGAAGCTGATGGTGATCTTGAGACATGTTGCA 1563
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1482 GTATGTTGTTACGAGGCCTTTGTTCTGGTGAAGCTGATGGTGATCTTGAGACATGTTGCA 1541
Query 1564 GAGCTGCAAGCATTCTTTCTCATGTTGTCAAGGACAATCTTCGGTGCAAGGAAAAGGCTT 1623
|||||||||||||||||| ||||||||| |||||||| ||| |||||||||||||||||
Sbjct 1542 GAGCTGCAAGCATTCTTTTTCATGTTGTGAAGGACAACCTTAAGTGCAAGGAAAAGGCTT 1601
Query 1624 TGAAAATCGTACTTGAATCACCGATGCCGTCCATGGGAACTCCAGAGCCTCTCTTTCAGA 1683
|||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||
Sbjct 1602 TGAAAATCGTACTTGAATCACCTATGCCTTCCATGGGAACTCCAGAGCCTCTCTTTCAGA 1661
Query 1684 GGATTGTCAGATACCTGGCTGTTGCTTCTTCCATGAAAAGCAAAGAGAAATCAAGCACAC 1743
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1662 GGATTGTCAGATACCTGGCTGTTGCTTCTTCCATGAAAAGCAAAGATAAATCAAGCACAC 1721
Query 1744 TGGGGAAATCATATATTCAACAGATCATTTTAAAACTGCTGGTGACATGGACTGTTGATT 1803
||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||
Sbjct 1722 TGGGGAAATCATATATTCAACAGATCATTCTAAAACTGCTTGTGACATGGACTGTTGATT 1781
Query 1804 GTCCGACTGCAGTTCAGTGCTTTTTAGATTCCCGCCACCACCTAACGTTTTTGCTCGAGC 1863
||||| |||||||||||| |||||||||||| ||||||||||||||||||||||||||||
Sbjct 1782 GTCCGGCTGCAGTTCAGTACTTTTTAGATTCTCGCCACCACCTAACGTTTTTGCTCGAGC 1841
Query 1864 TGGTAACAGACCCAGCTGCAACAGTTTGCATAAGGGGATTGGCGTCTATTCTATTGGGAG 1923
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1842 TGGTAACAGACCCAGCTGCAACAGTTTGCATAAGGGGATTGGCGTCTATTCTATTGGGAG 1901
Query 1924 AATGCGTCATTTACAATAAATCAATTGAGAATGGTAAAGATGCTTTTT-CTGTAGTTGAT 1982
|||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct 1902 AATGCGTCATTTACAATAAATCAATTGAGAATGGTAAAGATG-TTTTTGCTGTAGTTGAT 1960
Query 1983 GCTGTGGGCCAGAAGATGGGGCTGACATCATACTTCTCAAAGTTTGAAGAGATGCAGAAC 2042
||||||||||||||||||||||| |||||||||||||| || ||||||||||||||||||
Sbjct 1961 GCTGTGGGCCAGAAGATGGGGCTTACATCATACTTCTCGAATTTTGAAGAGATGCAGAAC 2020
Query 2043 AGCTTCATCTTCTCTCCCTCCAAGAAACCTCCACAGGGTTATAAACCGTTGACAAGAACA 2102
||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 2021 AGCTTCATCTTCTCTACCTCCAAGAAACCTCAACAGGGTTATAAACCGTTGACAAGAACA 2080
Query 2103 CCCACGCCGAGTGAAGCCGAGATTAATGAGGTGGATGAGGTAGATGAAATGGTTAAAGGG 2162
||| ||| |||||||||||||||||||||| ||||| || |||||| ||||||| ||||
Sbjct 2081 GCCATGCCTAGTGAAGCCGAGATTAATGAGGCGGATGGGGCAGATGAGATGGTTAGAGGG 2140
Query 2163 AATGAGGATCACCCAATGCTCTTATCTTTGTTTGATGCTAGTTTCATAGGCTTAGTGAAG 2222
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 2141 AATGAGGATCACCCAATGCTCTTGTCTTTGTTTGATGCTAGTTTCATAGGCTTAGTGAAG 2200
Query 2223 AGCTTGGAAGGTAACATCAGAGAAAGAATCGTGGATGTGTATAGTCGGCCAAAAAGTGAG 2282
||| ||||||| ||||||||||| ||||| ||||| ||||||||||||||||||||||||
Sbjct 2201 AGCCTGGAAGGCAACATCAGAGAGAGAATAGTGGAGGTGTATAGTCGGCCAAAAAGTGAG 2260
Query 2283 GTGGCTGTAGTACCAGCAGATTTGGAGCAGAAGAGCGGAGAAAATGAGAAAGACTACATC 2342
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 2261 GTGGCTGTAGTACCAGCAGATTTGGAGCAGAAGAGCGGAGAAACCGAGAAAGACTACATC 2320
Query 2343 AACCGCTTGAAAGCCTTTATAGAGAAACAGTGCTCGGAGATTCAGAACCTTCTTGCTCGA 2402
|||||||||||||||||||||||||||||||||||||| ||||||||||| || |||||
Sbjct 2321 AACCGCTTGAAAGCCTTTATAGAGAAACAGTGCTCGGAAATTCAGAACCTCCTAGCTCGT 2380
Query 2403 AACGCTGCTTTGGCAGAAGACGTAGCTAGCTCTGGCAGGAACGAGCAATCTCAAGGATCA 2462
|||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct 2381 AACGCTGCTTTGGCAGAAGATGTAGCTAGCTCTGGCAGGAATGAGCAATCTCAAGGATCA 2440
Query 2463 GAGCAAAGAGCAAGTACAGTAATGGACAAAGTTCAGATGGAAAGCATCAGACGAGAACTC 2522
||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||
Sbjct 2441 GAGCAAAGAGCAAGTACAGTAATGGACAAGGTTCAGATGGAAAGCATCAGGCGAGAACTT 2500
Query 2523 CAAGAAACATCTCAGCGTTTAGAGACAGTGAAGGCTGAAAAAGCCAAGATCGAGTCTGAG 2582
|| || |||||||||||||||||||| || || |||||||||| |||||||| || |||
Sbjct 2501 CAGGAGACATCTCAGCGTTTAGAGACGGTTAAAGCTGAAAAAGTGAAGATCGAATCCGAG 2560
Query 2583 GCATCAAGTAACAAGAACATGGCTGCAAAACTTGAGTTCG-ACCTAAAAAGCTTATCGGA 2641
||||||||| |||||||||||||||| |||||||||| || | ||||||||| |||||||
Sbjct 2561 GCATCAAGTTACAAGAACATGGCTGCGAAACTTGAGT-CGGATCTAAAAAGCCTATCGGA 2619
Query 2642 TGCATACAACAGTCTAGAACAGGCGAATTACCATCTTGAGCAGGAAGTGAAATCCTTGAA 2701
||||||||||||||| ||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct 2620 TGCATACAACAGTCTCGAACAAGCGAATTACCACCTTGAGCAGGAAGTGAAATCCTTGAA 2679
Query 2702 AGGAGGAGAGAG-TCCCATGCAGTTTCCTGATATAGAAGCCATCAAGGAAGAAGTGAGAA 2760
||||||||| || ||||||| || ||||||||||||||||||| ||||||||||||||||
Sbjct 2680 AGGAGGAGA-AGGTCCCATGGAGGTTCCTGATATAGAAGCCATTAAGGAAGAAGTGAGAA 2738
Query 2761 AAGAAGCTCAGAAAGAGAGCGAAGACGAGTTAAATGACTTGTTAGTATGTTTGGGACAAG 2820
||||||||||||||||||||||||| || ||||| |||||||||||||||||||||||||
Sbjct 2739 AAGAAGCTCAGAAAGAGAGCGAAGATGAATTAAACGACTTGTTAGTATGTTTGGGACAAG 2798
Query 2821 AGGAAAGCAAAGTCGAGAAACTAAGCGCGAAGCTGATAGAATTAGGAGTTGATGTTGATA 2880
|||| ||||| ||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 2799 AGGAGAGCAAGGTCGAAAAACTAAGCGCGAAGCTGATAGAATTAGGAGTTGATGTTGATA 2858
Query 2881 AGCTTTTAGAGGATATTGGAGACGAATCAGAAGCTCAAGCGGAATCTGAAGAAGACTGAC 2940
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 2859 AGCTTTTAGAGGATATTGGGGACGAATCAGAAGCTCAAGCGGAATCTGAAGAAGACTGAC 2918
Query 2941 CATTGAACAAGTTGTAGAGATTTTATATCCTCTAAAATGCTCTCT-CATCAGGGAATGGA 2999
|||||||||||| |||||||||| || |||||||||||||||||| ||||||| ||||||
Sbjct 2919 CATTGAACAAGTAGTAGAGATTTAATGTCCTCTAAAATGCTCTCTTCATCAGGTAATGGA 2978
Query 3000 ACTTGTACAGTCTTGGGTGATTTA-TTTCGATATTTGACAATTCTCTTTGCTTAATCTTT 3058
|||||||||||| |||||| |||| ||| ||| ||||||||||||| |||||||||||||
Sbjct 2979 ACTTGTACAGTCCTGGGTGGTTTACTTT-GATGTTTGACAATTCTCGTTGCTTAATCTTT 3037
Query 3059 TAGTTATAACTCTTTAATTTATCTACCAAACTTCTTAGATTGCTTGAAACAT 3110
||||||||||||||||| ||||||||||| ||||||||| |||| |||||||
Sbjct 3038 TAGTTATAACTCTTTAAATTATCTACCAA-CTTCTTAGAGTGCTCGAAACAT 3088
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 118917744890
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5