BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G27540.1
Length=1772
Score E
Sequences producing significant alignments: (Bits) Value
Ahg484544 jgi|Araly1|484544|fgenesh2_kg.5__536__AT3G27540.1 2466 0.0
Ahg488289 jgi|Araly1|488289|fgenesh2_kg.6__1423__AT5G14480.1 610 1e-173
Ahg920164 jgi|Araly1|920164|scaffold_101445.1 412 3e-114
> Ahg484544 jgi|Araly1|484544|fgenesh2_kg.5__536__AT3G27540.1
Length=1754
Score = 2466 bits (1335), Expect = 0.0
Identities = 1641/1783 (92%), Gaps = 43/1783 (2%)
Strand=Plus/Plus
Query 1 CGAGATTCCCATTACTTCTAAATTTCATTCATTCttttttttttCTTTCTTCCACACAGA 60
||||||||||||||||| | |||| |||||| ||||||||||||||||||||||||||
Sbjct 1 CGAGATTCCCATTACTT-TTAATTCCATTCA---TTTTTTTTTTCTTTCTTCCACACAGA 56
Query 61 -TTCGTA-ACGAGTTCTTCATTTTCATATATCTCCGTTTCTGGGttttttttttcccttt 118
|| | | | | | | |||| |||||||||||||||||| |||| |||
Sbjct 57 TTTTG-AGA-AAAAAAATAAATTTCCTATATCTCCGTTTCTGGG------TTTT---TTT 105
Query 119 caagtttcaattttttcttctgggtttttaa-tttGGTGATCAAACGTTTGCATTAGACG 177
|||| |||||| |||||||| || || ||||| ||| ||||||||||||||||||
Sbjct 106 ----TTTC--TTTTTT-TTCTGGGTATTAAATTTTGG-GATTAAACGTTTGCATTAGACG 157
Query 178 AATCATGTCCGATGGATACATCAATTCGAAGAAGACTGATGATATTTGCGAAGATGTTTG 237
|||||||||||||||||||| ||||||||||||||| ||||||||||| |||||||||||
Sbjct 158 AATCATGTCCGATGGATACAACAATTCGAAGAAGACAGATGATATTTGTGAAGATGTTTG 217
Query 238 TGGACAGGGATCAAAAGCAGCAAAAACAATCTCAAGGCTAAAATGTGTGCTTAAAGGTTT 297
||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||
Sbjct 218 TGGACAGGGATCAAAAGCAGCAAAAACAATCTCAAGGCTTAAATGTGTTCTTAAAGGTTT 277
Query 298 TGATTTAAGAACATACTTGTTCCTCTTTGTGTTGATGCCATTTGGTATCTTAGCAATTTA 357
||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 278 TGACTTAAGAACATACTTGTTTCTCTTTGTGTTGATGCCATTTGGTATCTTAGCAATTTA 337
Query 358 TCTACACGGCCAAAAGTTCACTTATTTCTTTAGACCTCTTTGGGAATCACCTCCGAAGCC 417
| |||| || |||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 338 TTTACATGGTCAAAAGTTCACTTATTTCTTTAGACCTCTTTGGGAATCACCTCCAAAGCC 397
Query 418 ATTTCAAACCATTCCTCATTACTATAATGAGAATGTTACTATGGAATCTCTCTGTAGTCT 477
||||| ||||||||||||||||||||||||||||| || |||||| |||||||||||||
Sbjct 398 GTTTCAGACCATTCCTCATTACTATAATGAGAATGTAACAATGGAAGCTCTCTGTAGTCT 457
Query 478 TCATGGTTGGGGAATTAGAGACTCGCCCAGACGGGTTTTCGACGCGGTTTTGTTTAGTAA 537
|||||||||||||| |||||| || || ||||||||||||||||||||||||||||||||
Sbjct 458 TCATGGTTGGGGAACTAGAGAATCACCGAGACGGGTTTTCGACGCGGTTTTGTTTAGTAA 517
Query 538 TGAGAAAGATCTTTTAACTGTTAGATGGAATGAGCTTTATCCTTACGTGACACAGTTTGT 597
|||||| ||||||||||||||||| ||||| |||||||||||||| ||||||||||||||
Sbjct 518 TGAGAAGGATCTTTTAACTGTTAGGTGGAAAGAGCTTTATCCTTATGTGACACAGTTTGT 577
Query 598 GATTCTTGAATCTAATTCTACGTTTACTGGTTTGCCTAAACCATTGGTGTTTAAGAGTAA 657
|||||||||||| ||||| |||||||| |||||||||||||| ||||| |||||||||||
Sbjct 578 GATTCTTGAATCGAATTCGACGTTTACGGGTTTGCCTAAACCTTTGGTTTTTAAGAGTAA 637
Query 658 TAAGGATCAGTTTAAGTTTGTGGAGCCGCGGCTAACTTATGGGACGATTGGTGGACGGTT 717
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 638 TAAGGATCAGTTTAAGTTTGTGGAGCCGCGGCTTACTTATGGGACGATTGGTGGACGGTT 697
Query 718 TAGGAAAGGCGAGAATCCGTTTGTCGAAGAAGCGTATCAGCGAGTTGCGTTGGATCAGTT 777
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 698 TAGGAAAGGCGAGAATCCGTTTGTTGAAGAAGCGTATCAGCGAGTTGCGTTGGATCAGTT 757
Query 778 GCTTAGGATTGCTGGTATTCAAGAAGATGATTTGTTGATAATGTCTGATGTTGATGAGAT 837
|||||| |||||||| ||| |||| |||||||||||||||||||| ||||||||||||||
Sbjct 758 GCTTAGAATTGCTGGCATTGAAGAGGATGATTTGTTGATAATGTCGGATGTTGATGAGAT 817
Query 838 TCCTAGTGCTCATACTATCAATCTTTTGAGATGGTGTGATGATATTCCTCCAGTTCTTCA 897
|| ||||||||||| |||||||||||||||||||| || ||||||||||||||||||||
Sbjct 818 ACCGAGTGCTCATACGATCAATCTTTTGAGATGGTGCGACGATATTCCTCCAGTTCTTCA 877
Query 898 CCTTCAG-TTGAAGAATTATTTGTATTCTTTCGAATACTATGTCGATAGCAAGAGCTGGA 956
||||||| || |||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 878 CCTTCAGCTT-AAGAATTACTTGTATTCTTTCGAATACTATGTCGATAGCAAGAGCTGGA 936
Query 957 GAGCGTCTATACACCGTTACAGTCCAGGGAAAACGCGGTATGCTCATTTCCGTCAGAGTA 1016
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
Sbjct 937 GAGCGTCTATACACCGTTACAGTCCAGGGAAAACTCGGTATGCTCATTTCCGTCAGAGCA 996
Query 1017 ATGTTATGTTAGCTGATTCTGGATGGCATTGTAGCTTCTGTTTCCGTTATATAAGTGAGT 1076
||||||||||||| |||||||||||||| || ||||||||||| ||||||||||| ||||
Sbjct 997 ATGTTATGTTAGCAGATTCTGGATGGCACTGCAGCTTCTGTTTTCGTTATATAAGCGAGT 1056
Query 1077 TTATATTCAAGATGAAAGCTTATAGTCATTCAGACCGTGTCAGATTCTCTCATTACCTGA 1136
|||||||||||||||||||||| ||||| || ||||||||||||||||||||||||||||
Sbjct 1057 TTATATTCAAGATGAAAGCTTACAGTCACTCGGACCGTGTCAGATTCTCTCATTACCTGA 1116
Query 1137 ATCCAAGGAGGATTCAAGATGTTATTTGCAAAGGAACTGATTTGTTTGATATGTTACCTG 1196
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1117 ATCCAAGGAGGATTCAAAATGTTATTTGCAAAGGAACTGATTTGTTTGATATGTTACCTG 1176
Query 1197 AAGAATACACATTCAAGGAGATTATAGGCAAAATGGGACCTGTACCTCGGTCTTATTCAG 1256
|||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1177 AAGAGTACACATTCAAGGAGATTATCGGCAAAATGGGACCTGTACCTCGGTCTTATTCAG 1236
Query 1257 CGGTTCATCTTCCTTCGTACCTACTGTATAACGCCGAGCAGTACAAATACTTGTTGCCTG 1316
||||||||||||| || ||||||||| ||||||||||||||||||||||||||||||| |
Sbjct 1237 CGGTTCATCTTCCATCATACCTACTGGATAACGCCGAGCAGTACAAATACTTGTTGCCCG 1296
Query 1317 GTAATTGCATAAGAGAAAAACAGACAGGGTTTATATGATGATTGCTTTTAAAGTGTTCTT 1376
|||||||||||||||| ||||||||||||||||||||||||| || || |||||||| ||
Sbjct 1297 GTAATTGCATAAGAGACAAACAGACAGGGTTTATATGATGATCGCATTGAAAGTGTTATT 1356
Query 1377 GTATAGTTCTAAGCTTCAGGGCCTTTGCATCATTCTTGAGATAAAAAGAGCAAAATTTTG 1436
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1357 GTATAGTTCTAAGCTTCAGGGCTTTTGCATCATTCTTGAGATAAAAAGAGCAAAATTTTG 1416
Query 1437 CGCGAAAGAGAGGATATTGAAGAACGTA--GCCAAGAAGCGTATATAACCCGATTGCTG- 1493
||| ||||||| || || |||||||||| |||| |||||||||||||||||||| | |
Sbjct 1417 CGCAAAAGAGAAGAAATCGAAGAACGTAACGCCATGAAGCGTATATAACCCGATTTCAGC 1476
Query 1494 GATAT-TTTTGCGATACAGGAGGGTTTGTGAGAACAAAAAGAGCTTACTATGAGTTAGAG 1552
||| | ||||| |||||||||||||||||||||||||||||||||||| ||||||| |
Sbjct 1477 GATTTCTTTTG--ATACAGGAGGGTTTGTGAGAACAAAAAGAGCTTACTTTGAGTTA-A- 1532
Query 1553 CAGCACAACAATTCTCAGGtttttttAACAATGGGAAAAAATGTTGTTGCCTAAGGCTGA 1612
|||||| ||| ||| |||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1533 CAGCACGACACTTCCCAGGTTTTTTTAGCAATGGGAAAAAATGTTGTTGCCTAAGGCTGA 1592
Query 1613 TTTGGTA--GTA-TA--GATGTTTCAGTATCCATTTGTTTATATAACAATTTTCTTCGCG 1667
||||||| ||| || |||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1593 TTTGGTAATGTAGTATAGATGTTTCAGAATCCATTTGTTTATATAACAATTTTCTTCGCG 1652
Query 1668 GTTCGTTGTTCTGAGTTTAGTTCTGGTTATA-CAGTTGCTTGATTATTCTTATTCTGTTT 1726
||||||||||||||||||||||||||||||| ||||| ||||||||||||| ||| ||||
Sbjct 1653 GTTCGTTGTTCTGAGTTTAGTTCTGGTTATATCAGTTACTTGATTATTCTTGTTCAGTTT 1712
Query 1727 CCATTTATCTATTAAAGCCTTCTTTGCTCTGATCATTTTTGAC 1769
||||||||||||||| | ||||||| |||||||||||||||||
Sbjct 1713 CCATTTATCTATTAA-GTCTTCTTTACTCTGATCATTTTTGAC 1754
> Ahg488289 jgi|Araly1|488289|fgenesh2_kg.6__1423__AT5G14480.1
Length=1740
Score = 610 bits (330), Expect = 1e-173
Identities = 919/1194 (77%), Gaps = 77/1194 (6%)
Strand=Plus/Plus
Query 181 CATGTCCGATGGATAC-ATCAATTCGAAGAAGACTGATGATATTTGCGAAGATGTTTGTG 239
|||||||||||||||| || | ||| |||||||| || ||||| ||||| ||||||||||
Sbjct 227 CATGTCCGATGGATACTAT-AGTTCTAAGAAGACAGACGATATCTGCGATGATGTTTGTG 285
Query 240 GACA-G--GGATCAAAAGCAGCAAAAACAATCTCAAGGCTAAAATGTGTGCTTA-AAGGT 295
|||| | || || |||| | || | |||||||| | | |||||||| || |||
Sbjct 286 GACAGGATGGTTCTCGAGCATCCAAGGCCTTCTCAAGGGTTAGATGTGTGC-TACGAGGA 344
Query 296 TTTGATTT-AAGAACATACT-TGTTCCTCTT-TGTGTTGATGCC-ATTTGGT-ATCTTAG 350
||||||| ||| || || | | |||||||| ||| |||| |||| | ||||| |
Sbjct 345 CTTGATTTCAAG-ACGTA-TATCTTCCTCTTCACCATTG-TGCCTATTT--TCATCTTTG 399
Query 351 CAATTTATCTACACGGCCAAAAGTTCACTTATTTCTTTAGACCTCTTTGGGAATCACCTC 410
| | ||| | || || || ||| |||| |||||||| ||||| ||||||||||| || |
Sbjct 400 GAGTCTATTTGCATGGTCAGAAGCTCACATATTTCTTGAGACCGCTTTGGGAATCTCCAC 459
Query 411 CGAAGCCATTTCAAAC-CATTCCTCATTACTATAATGAGAATG-TTACTATGG-AATCTC 467
| ||||| |||||||| | ||||||||||||| ||||||| | | | |||| || | |
Sbjct 460 CCAAGCCGTTTCAAACGC-TTCCTCATTACTACCATGAGAACGCCT-CCATGGCAA-CAC 516
Query 468 TCTGTAGTCTTCATGGTTGGGGAATTA--GAGACTCGCCCAGACGGGT-TTTCGACGCGG 524
|||| |||||||| || | |||| | | || || |||||| |||| ||| || || |
Sbjct 517 TCTGCAGTCTTCACGGCT--GGAAACACCGCGAATCTCCCAGAAGGGTCTTT-GATGCTG 573
Query 525 TTTTGTTTAGTAATG-AGAAAGATCT-TTTAACTGTTAGATGGAATGAGCTTTATCCTTA 582
| ||||| || |||| || ||| | || ||| | | ||||| ||||||||||||||
Sbjct 574 TCTTGTTCAGCAATGAAG-TTGATATGCTT-ACTATCCGGTGGAAAGAGCTTTATCCTTA 631
Query 583 CGTGACACAGTTTGTGATTCTTGAATCTAATTCTACGTTT-ACTGGTTTGCCTAAACCAT 641
| | ||||||||||| ||||||||||| || || || ||| ||||||||||||||||| |
Sbjct 632 CATTACACAGTTTGTAATTCTTGAATCAAACTCGAC-TTTCACTGGTTTGCCTAAACCGT 690
Query 642 TGGTGTTT-AA-GAGTAATAAGGATCAGTTTAAGTTTGTGGAGCCGCGGCTAACTTATGG 699
| || ||| || | | ||| || |||| ||||||| |||||| |||| |||||||
Sbjct 691 TAGT-TTTCAATG-GGAATCGGGGGAAGTTCGAGTTTGTTGAGCCGAGGCTGTCTTATGG 748
Query 700 G-ACGATTGGTGGACGGTTTAGGAAAGGCGAGAATCCGTTTGTCGAAGAAGCGTATCAG- 757
| || |||| ||| | || | ||||||||| || ||||||||||||||||| || |||
Sbjct 749 GAAC-ATTGCAGGAAGATTCAAGAAAGGCGAAAACCCGTTTGTCGAAGAAGCTTACCAGA 807
Query 758 CGAGTTGCGTTGGATCAGTTGCTTAGGA-TTGCTGGTATTC-AAGAAGATGATTTGTTGA 815
|| |||| ||||||||| || | | || | || |||| || ||||||||||| ||||||
Sbjct 808 GGA-TTGCATTGGATCAGCTGATCA-GACTCGCGGGTA-TCGAAGAAGATGATCTGTTGA 864
Query 816 TAATGTCTGATGTTGATGAGATTCCTAGTGCTCATACTATCAATCTT-TTGAGATGGTGT 874
|||||||||||||||||||||||||||| |||||||| |||||||| || ||||||||
Sbjct 865 TAATGTCTGATGTTGATGAGATTCCTAGCGCTCATACCATCAATCTGCTT-AGATGGTGC 923
Query 875 GATG-ATATTCCTCC-AGTTCTTCACCTTCAGTTGAAGAATTATTTGTATTCTTTCGAAT 932
|| | ||| ||||| | ||||||| ||||||||||| || || || || || ||||| |
Sbjct 924 GACGGATAC-CCTCCGA-TTCTTCATCTTCAGTTGAAAAACTACTTATACTCATTCGAGT 981
Query 933 ACTAT-GTCGATAGCAAGAGCTGGAGAGCGTCTATACACC-GTTACA-GTCCAGGGAAAA 989
||| | || || | ||| ||||||||||| ||||| || | || ||| | || ||||| |
Sbjct 982 ACT-TCGTTGACAACAAAAGCTGGAGAGCTTCTATTCATCAGT-ACAAG-CCGGGGAAGA 1038
Query 990 CGCGG-TATGCTCATTTCCGTCAGAGT-AATGTTATGTTAGCTGATTCTGGATGGCATTG 1047
| | | || |||||||||||||| || || | | ||||| ||||| || ||||||||
Sbjct 1039 C-CAGATACGCTCATTTCCGTCA-AGGCAACACTCTTTTAGCAGATTCGGGTTGGCATTG 1096
Query 1048 TAGCTTCTGTTTCCGTTATATAAGTGAGTTTATATTCAAGATGAAAGCTTATAGTCATTC 1107
|| ||||||||| | | || || ||||||||||||||||||||||| || ||||| |
Sbjct 1097 CAGTTTCTGTTTCAGGCACATCAGCGAGTTTATATTCAAGATGAAAGCGTACAGTCA--C 1154
Query 1108 A--GACCGTGTCAGATTCTCTCATTACCTGAATCCAAGGAGGATTCAAGATGTTATTTGC 1165
| ||| | ||||||||||||||||| || || |||| || || |||||||| || ||
Sbjct 1155 AATGACAGGGTCAGATTCTCTCATTATCTAAACCCAAAAAGAATCCAAGATGTGATCTGT 1214
Query 1166 AAAGGAACTGATTTGTTTGATATG-TTACCTGAAGAATACACATTCAAGGAGATTATAGG 1224
|||||||||||| |||| || ||| || |||||||| || ||||||| ||| || || ||
Sbjct 1215 AAAGGAACTGATCTGTTCGACATGCTT-CCTGAAGAGTATACATTCAGGGAAATCATCGG 1273
Query 1225 CAAAATGGGACCTGTACCTCGGTCTTATTCAGCGGTTCATCTTCCTTCGT-ACCT-A-CT 1281
||| | || || | || ||||||||||| || |||||||| || | | | || | |
Sbjct 1274 TAAACTAGGTCCAATCCCGCGGTCTTATTCTGCAGTTCATCTCCCAGC-TCATCTGATC- 1331
Query 1282 GTATAACGCCGAGCAGT-ACAAATACTTGTTGCCTGGTAATTGCATAAGAGAAA 1334
| | || || ||| ||| ||||||||||||| ||||| || |||||||| ||||
Sbjct 1332 GAAAAA-GCTGAG-AGTTACAAATACTTGTTACCTGGGAACTGCATAAGGGAAA 1383
> Ahg920164 jgi|Araly1|920164|scaffold_101445.1
Length=1221
Score = 412 bits (223), Expect = 3e-114
Identities = 737/975 (76%), Gaps = 76/975 (8%)
Strand=Plus/Plus
Query 398 TGGGAATCACCTCCGAAGCCATTTCA-AACCATTCCTCATTACTATAATGAGAATG-TTA 455
||||||||||| || || || ||||| | ||||||||||||||| ||||||||| ||
Sbjct 256 TGGGAATCACCACCTAAACCTTTTCATGA-CATTCCTCATTACTACCATGAGAATGCTT- 313
Query 456 CTATGGA-ATCTCTCTGTAGTCTTCATGGTTGGGGAAT-TA-GAGACTCGCCC-AGACGG 511
||||||| | |||| |||| || ||||| ||||| | || |||| | ||| |||||
Sbjct 314 CTATGGAGA-CTCTTTGTAAACTCCATGGCTGGGG--TGTACGAGAAT-ACCCTAGACGA 369
Query 512 GTTT-TCGACGCGGTTTTGTTTAGTAATGAGAAAGATCTTTTAACTGTTAGATGGAATGA 570
|||| | || ||||||||||| ||||| ||| ||| | | ||||| | ||| | ||
Sbjct 370 GTTTAT-GATGCGGTTTTGTTCAGTAACGAGCTTGATATCCTCGCTGTTCGGTGG-A-GA 426
Query 571 G-CTT-TATCCTTACGTGACACAGTTTGTGATTCTTGAATCTAATTCTACGTTTACTGGT 628
| || | ||||||| | || |||||||| |||| ||||| || | ||||| |||||
Sbjct 427 GAATTGTTTCCTTACATCACTCAGTTTGTCCTTCTAGAATCAAACACGACGTTCACTGGG 486
Query 629 TTGCCTAAACCAT-TGGTGTTTAAGAGTAAT-A-AG-GATCAGTTTAAGTTTGTGGAGCC 684
|||||||| || | | |||||| | | | | | ||| |||| |||||| | ||| |
Sbjct 487 TTGCCTAAGCC-TCTTGTGTTT--G-CTGCTCACCGAGATGAGTTCAAGTTTATCGAGTC 542
Query 685 GCGGC-TAACTTATGGGAC-GATTGGTGGACGGTTTAG-GAAA-GGCGAGAATCCGTTTG 740
| || | |||||||| || | |||||||| | ||| | ||| ||| |||||||||||
Sbjct 543 AC-GCTTGACTTATGGTACTG-TTGGTGGAAGATTT-GTCAAAGGGC-AGAATCCGTTT- 597
Query 741 T-CGAAGAAGCGTATCAGCGAGTTGCGT-TGGATCAG-TTGCTTAGGATTGCTGGTATTC 797
| |||||| || ||||||||||| || | | |||||| || || || || ||||| |||
Sbjct 598 TACGAAGAGGCTTATCAGCGAGTAGC-TCTAGATCAGCTT-CTGAGAATCGCTGGGATT- 654
Query 798 A-AGAAGATGATTTGTTGATAATGTCTGATGTTGATGAGATTCCTAGT-GCTCATACTAT 855
| || ||||| |||||| ||||||||||||||||||||||||| ||| | || || ||
Sbjct 655 ACTGATGATGACTTGTTGTTAATGTCTGATGTTGATGAGATTCCAAGTAG-ACACACCAT 713
Query 856 CAATCTTTTGAGATGGTGTGATGATATTCCTC-CAG-TTCTTCACCTTCAGTTGAAGAAT 913
|| ||||| || ||||| ||||||| ||| | || | ||||| || | | | |||||
Sbjct 714 TAACCTTTTAAGGTGGTGCGATGATA-TCC-CGAAGATCCTTCATCTGCGGCTCAAGAAC 771
Query 914 TAT-TTGTATTCTTTCGAA-TACTATGTCGATAGCAAGAGCTGGAGAGCGTCTATACACC 971
||| || || || |||||| | || ||| |||| ||||||||||||||| || | |||
Sbjct 772 TATCTT-TACTCGTTCGAATTCCT-TGTTGATAACAAGAGCTGGAGAGCTTCCGTCCACA 829
Query 972 GTTA-CAGTCCAGGG-AAAACGCGGTATGCTCATT-TCCGTCAG-AGTAATGTTATGTTA 1027
| || || | ||| || || ||||||||||||| | || ||| | ||| || ||
Sbjct 830 GATATGAG-AC-GGGTAAGACACGGTATGCTCATTAT-CGACAGTCG-GATGAAATCTTG 885
Query 1028 GCTGATTCTGGATGGCATTGTAGCTTCTGTTTCCGTTATATAAGTGAGTTTATATTCAAG 1087
|| ||| | |||||||| |||||||| || ||||| || ||||||||||||||||||
Sbjct 886 GCGGATGCAGGATGGCACTGTAGCTTTTGCTTCCGACGGATCAGTGAGTTTATATTCAAG 945
Query 1088 ATGAAAGCTTATAGTCATTCA-GACCGTGTCAGATTCTC-TCATTACCTGAATCC-AAG- 1143
|||||||||||||| ||| | || | || || || | ||||| | ||||||| |||
Sbjct 946 ATGAAAGCTTATAGCCATA-ATGATAGAGTGAGGTT-TGGTCATTTCTTGAATCCTAAGA 1003
Query 1144 GAGGATTCAA-GATGTTATTTGCAAAGGAACTGATTTGTTT-GATATG-TTACCTGAAGA 1200
||| ||||| || ||||| ||||||||| ||||| | ||| |||||| || || |||||
Sbjct 1004 GAG--TTCAAAGA-GTTATATGCAAAGGAGCTGATCT-TTTCGATATGCTTCCC-GAAGA 1058
Query 1201 ATACACATTCAAGGAGATTATAGGCAAAATGGGACCTGTACCTCGGTCTTAT-TCAGCGG 1259
|| || ||||||||||| ||||| |||||||| || | || | |||| | ||||| |
Sbjct 1059 GTATACCTTCAAGGAGATAATAGGAAAAATGGGTCCAATCCCGCATTCTT-TCTCAGCCG 1117
Query 1260 TTCATCTTCCTTCGTACCTACTGTATAACGCCGAGCAGTACAAATACTTGTTGCCTGGTA 1319
|||||||||||||||| || ||| | ||||| || |||||| || | | || || || |
Sbjct 1118 TTCATCTTCCTTCGTATCTCCTGGAAAACGCGGATAAGTACAGATTCCTCTTACCGGGAA 1177
Query 1320 ATTGCATAAGAGAAA 1334
|||||||||||||||
Sbjct 1178 ATTGCATAAGAGAAA 1192
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66505567770
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5