BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G27560.1 Length=1734 Score E Sequences producing significant alignments: (Bits) Value Ahg484546 jgi|Araly1|484546|fgenesh2_kg.5__538__AT3G27560.1 2281 0.0 > Ahg484546 jgi|Araly1|484546|fgenesh2_kg.5__538__AT3G27560.1 Length=1632 Score = 2281 bits (1235), Expect = 0.0 Identities = 1518/1644 (92%), Gaps = 62/1644 (4%) Strand=Plus/Plus Query 1 ACGCGGAAAAAGCAAACAACTTTCGATTTCTTT-A-CTC-Ctttt-tttCCTTCTCTCTC 56 ||||||||||||||||||||||||||||||||| | ||| |||| ||| ||| | |||| Sbjct 1 ACGCGGAAAAAGCAAACAACTTTCGATTTCTTTAATCTCTTTTTTATTTTCTTGTTTCTC 60 Query 57 AAAACCCCTAAAATAAGAAAC---TTCa-aaaaaaaTAATCATTAACCAAACCAACACGA 112 ||||||||||||||||||||| || | ||||||| |||| |||||||||||||||||| Sbjct 61 AAAACCCCTAAAATAAGAAACTTTTTTAGAAAAAAA-AATCTTTAACCAAACCAACACGA 119 Query 113 ATCATCAAAATTTTGACCATTTCTCCATCAGTTCCAGTGTCAACTTCAGTTCTTCTTCCC 172 |||||| || ||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 120 ATCATC-AAGTTTTGACCATTTCTCCATCAGTTCCAGTGTCAACTTCAG---TTCTTCCC 175 Query 173 ATTCTTCTCTCAAATTCCCATCTTTGCCGTTCA-ATGTTTTTGTTTTCTTTATGTAGTTG 231 |||||||||||||||||||| |||| |||| || | |||||||||||||| | |||||| Sbjct 176 ATTCTTCTCTCAAATTCCCAACTTTTCCGTGCAGTTTTTTTTGTTTTCTTTTTATAGTTG 235 Query 232 ACGAAATTA-G-----GATTTTGATTGTCGT-GT-TTCTTTCTTTATTCTGTGTTCGGGG 283 ||| ||||| | ||||||||||||||| | ||||||||||||||||||||||||| Sbjct 236 ACG-AATTAGGATTTTGATTTTGATTGTCGTCTTCTTCTTTCTTTATTCTGTGTTCGGGG 294 Query 284 AATCCTTTGATAATTTTCTCTCTTTATATTCCACCaaaaaaaaaaGCATCTTTTTTGTTT 343 ||||| ||| | ||||||||||||||||||||| ||||||||||| ||||||| Sbjct 295 AATCC-TTG---A-TTTCTCTCTTTATATTCCACC----AAAAAAGCATC---TTTGTTT 342 Query 344 CTTTATCTATCTGATTGTTGTATAGTTTCTCAATTCCAAAACCAAACAGAATGATTAATC 403 ||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||| Sbjct 343 CTTTATCTATCTGATTGTTGTATAG-TTCTCAATTCCAATACCAAACAGAATGATTAATC 401 Query 404 AATCAAAAAGGGCCCAGCTTTGACATAtctctctctttctctctTTAGCCAACTAGGGTT 463 ||||||||||||||||||||||||||| |||| |||||| |||| | |||||| | Sbjct 402 AATCAAAAAGGGCCCAGCTTTGACATA----TCTC--TCTCTC--TAGCTAGCTAGGG-T 452 Query 464 TTTGTGATTTTTGTTCTGGGGTTGTTGTGGGAAAATGGGATCTGCAAGTGGGTTTTACTC 523 ||||||||||||||||| ||| | |||||| ||||||||||||||||||||||||||||| Sbjct 453 TTTGTGATTTTTGTTCT-GGG-T-TTGTGGAAAAATGGGATCTGCAAGTGGGTTTTACTC 509 Query 524 GAACGAAGAGTTTGAATTGGATCCTAAATGGCTTGTTGATCCTCGTCATCTCTTTGTTGG 583 || ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 510 AAATGAAGATTTTGAATTGGATCCTAAATGGCTTGTTGATCCTCGTCATCTCTTTGTTGG 569 Query 584 TCCTAAGATCGGTGAAGGTGCTCATGCCAAAGTTTATGAGGGAAAGTATAGAAACCAAAC 643 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 570 TCCTAAGATCGGTGAAGGTGCTCATGCTAAAGTTTATGAGGGAAAGTATAGAAACCAAAC 629 Query 644 AGTGGCGATTAAGATTATTAAAAGAGGAGAGTCCCCTGAAGAGATTGCTAAACGAGATAA 703 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 630 AGTGGCGATTAAGATTATTAAAAGAGGAGAATCCCCTGAAGAGATTGCTAAACGAGATAA 689 Query 704 CCGGTTTGCGAGAGAGATTGCTATGTTGTCTAAAGTCCAGCACAAGAATTTAGTCAAGTT 763 ||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||| Sbjct 690 CCGGTTTGCGAGAGAGATTGCTATGCTGTCTAAAGTCCAGCACAAGAATTTGGTCAAGTT 749 Query 764 CATTGGAGCGTGCAAAGAACCCATGATGGTTATAGTTACTGAGCTTCTACTAGGCGGTAC 823 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 750 CATTGGAGCGTGCAAAGAACCCATGATGGTTATAGTTACCGAGCTTCTACTAGGCGGTAC 809 Query 824 ATTGCGTAAATATCTAGTCAGCTTACGGCCAAAGCGTTTAGACATTCGTTTGGCTGTTGG 883 |||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 810 ATTGCGAAAATATCTAGTGAGCTTACGGCCAAAGCGTTTAGACATTCGTTTGGCTGTTGG 869 Query 884 TTTTGCTCTTGACATTGCTCGTGCAATGGAATGTTTACATTCCCACGGTATCATTCACCG 943 |||||||||||||||||||||||||||||||||||||||||||| || ||||||||||| Sbjct 870 ATTTGCTCTTGACATTGCTCGTGCAATGGAATGTTTACATTCCCATGGAATCATTCACCG 929 Query 944 CGATCTTAAACCAGAGAATTTGATCTTATCAGCGGATCATAAGACAGTGAAACTCGCTGA 1003 ||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||| Sbjct 930 CGATCTTAAACCAGAGAATTTGATCTTATCAGCAGATCATAAGACAGTGAAACTTGCTGA 989 Query 1004 TTTCGGTTTAGCTAGAGAAGAATCATTAACCGAGATGATGACCGCAGAGACTGGTACATA 1063 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 990 TTTCGGTTTAGCTAGAGAAGAATCATTAACCGAGATGATGACCGCAGAGACTGGTACATA 1049 Query 1064 CCGATGGATGGCCCCCGAGCTCTACAGTACGGTTACGTTAAGGCAAGGAGAGAAGAAACA 1123 ||||||||||||||| ||||| |||||||||||||| ||||||||||||||||||||||| Sbjct 1050 CCGATGGATGGCCCCTGAGCTTTACAGTACGGTTACATTAAGGCAAGGAGAGAAGAAACA 1109 Query 1124 CTATAATCATAAAGTAGATGCTTACAGCTTTGCCATTGTCTTGTGGGAACTTATTCTCAA 1183 ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 1110 TTATAATCATAAAGTAGATGCTTACAGCTTCGCCATTGTCTTGTGGGAACTTATTCTCAA 1169 Query 1184 CAAGTTACCATTTGAAGGCATGTCAAATCTACAAGCAGCATATGCTGCTGCATTCAAGAA 1243 |||||||||||||||||||||||| |||||||||||||| |||||||| ||||||||||| Sbjct 1170 CAAGTTACCATTTGAAGGCATGTCCAATCTACAAGCAGCCTATGCTGCAGCATTCAAGAA 1229 Query 1244 CTTGAGGCCAAGTGCAGAGGATTTACCAGGAGACTTAGAGATGATTGTAACTTCATGCTG 1303 ||||||||| |||||||| ||| |||||||||| |||||||||||||||||||||||||| Sbjct 1230 CTTGAGGCCGAGTGCAGAAGATCTACCAGGAGATTTAGAGATGATTGTAACTTCATGCTG 1289 Query 1304 GAAAGAAGATCCTAACGAACGGCCAAATTTCACAGAGATAATTCAAATGCTCCTCCGTTA 1363 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 1290 GAAAGAAGATCCTAACGAACGGCCAAATTTCACAGAGATAATCCAAATGCTCCTCCGTTA 1349 Query 1364 CCTCACCACTGTTTCG---GCACCACAGATCATTCCTCCACCGAATCGACGAGTCTTCTC 1420 ||||||||||||||| ||||||||||| || |||||||||||||||||||| ||||| Sbjct 1350 CCTCACCACTGTTTCATCAGCACCACAGATTATCCCTCCACCGAATCGACGAGTTTTCTC 1409 Query 1421 ATCAGAAAACATAGTTTTATCACCGGAATCTCCCGGAACTTGCTCTCTGATGTCTGTCAG 1480 |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 1410 TTCAGAAAACATAGTTTTATCACCGGAATCTCCCGGAACATGCTCTCTGATGTCTGTCAG 1469 Query 1481 AGACGGAGACGTTTCTCGTCAGACCGTTAACACTGCTGATTCATCGGAGAAACAAACAAA 1540 ||| |||||||||||||| |||||||||||||| || ||||| || ||||||||| |||| Sbjct 1470 AGATGGAGACGTTTCTCGCCAGACCGTTAACACGGCAGATTCGTCAGAGAAACAACCAAA 1529 Query 1541 AGGAAGCTTCTTCTCCTGCTGCTCATAGATGA----TGTAT--T-TCGTTG-T-GTAATC 1591 |||||||||||||||||||||||||||||||| | ||| | | ||| | |||||| Sbjct 1530 AGGAAGCTTCTTCTCCTGCTGCTCATAGATGAAAAATTTATAATATATTTGGTTGTAATC 1589 Query 1592 TGTAAAGAA-AACGAGAGGAAAGT 1614 |||||| || |||| ||||||||| Sbjct 1590 TGTAAA-AATAACGGGAGGAAAGT 1612 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 65058138460 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5