BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G27560.1
Length=1734
Score E
Sequences producing significant alignments: (Bits) Value
Ahg484546 jgi|Araly1|484546|fgenesh2_kg.5__538__AT3G27560.1 2281 0.0
> Ahg484546 jgi|Araly1|484546|fgenesh2_kg.5__538__AT3G27560.1
Length=1632
Score = 2281 bits (1235), Expect = 0.0
Identities = 1518/1644 (92%), Gaps = 62/1644 (4%)
Strand=Plus/Plus
Query 1 ACGCGGAAAAAGCAAACAACTTTCGATTTCTTT-A-CTC-Ctttt-tttCCTTCTCTCTC 56
||||||||||||||||||||||||||||||||| | ||| |||| ||| ||| | ||||
Sbjct 1 ACGCGGAAAAAGCAAACAACTTTCGATTTCTTTAATCTCTTTTTTATTTTCTTGTTTCTC 60
Query 57 AAAACCCCTAAAATAAGAAAC---TTCa-aaaaaaaTAATCATTAACCAAACCAACACGA 112
||||||||||||||||||||| || | ||||||| |||| ||||||||||||||||||
Sbjct 61 AAAACCCCTAAAATAAGAAACTTTTTTAGAAAAAAA-AATCTTTAACCAAACCAACACGA 119
Query 113 ATCATCAAAATTTTGACCATTTCTCCATCAGTTCCAGTGTCAACTTCAGTTCTTCTTCCC 172
|||||| || ||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 120 ATCATC-AAGTTTTGACCATTTCTCCATCAGTTCCAGTGTCAACTTCAG---TTCTTCCC 175
Query 173 ATTCTTCTCTCAAATTCCCATCTTTGCCGTTCA-ATGTTTTTGTTTTCTTTATGTAGTTG 231
|||||||||||||||||||| |||| |||| || | |||||||||||||| | ||||||
Sbjct 176 ATTCTTCTCTCAAATTCCCAACTTTTCCGTGCAGTTTTTTTTGTTTTCTTTTTATAGTTG 235
Query 232 ACGAAATTA-G-----GATTTTGATTGTCGT-GT-TTCTTTCTTTATTCTGTGTTCGGGG 283
||| ||||| | ||||||||||||||| | |||||||||||||||||||||||||
Sbjct 236 ACG-AATTAGGATTTTGATTTTGATTGTCGTCTTCTTCTTTCTTTATTCTGTGTTCGGGG 294
Query 284 AATCCTTTGATAATTTTCTCTCTTTATATTCCACCaaaaaaaaaaGCATCTTTTTTGTTT 343
||||| ||| | ||||||||||||||||||||| ||||||||||| |||||||
Sbjct 295 AATCC-TTG---A-TTTCTCTCTTTATATTCCACC----AAAAAAGCATC---TTTGTTT 342
Query 344 CTTTATCTATCTGATTGTTGTATAGTTTCTCAATTCCAAAACCAAACAGAATGATTAATC 403
||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||
Sbjct 343 CTTTATCTATCTGATTGTTGTATAG-TTCTCAATTCCAATACCAAACAGAATGATTAATC 401
Query 404 AATCAAAAAGGGCCCAGCTTTGACATAtctctctctttctctctTTAGCCAACTAGGGTT 463
||||||||||||||||||||||||||| |||| |||||| |||| | |||||| |
Sbjct 402 AATCAAAAAGGGCCCAGCTTTGACATA----TCTC--TCTCTC--TAGCTAGCTAGGG-T 452
Query 464 TTTGTGATTTTTGTTCTGGGGTTGTTGTGGGAAAATGGGATCTGCAAGTGGGTTTTACTC 523
||||||||||||||||| ||| | |||||| |||||||||||||||||||||||||||||
Sbjct 453 TTTGTGATTTTTGTTCT-GGG-T-TTGTGGAAAAATGGGATCTGCAAGTGGGTTTTACTC 509
Query 524 GAACGAAGAGTTTGAATTGGATCCTAAATGGCTTGTTGATCCTCGTCATCTCTTTGTTGG 583
|| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 510 AAATGAAGATTTTGAATTGGATCCTAAATGGCTTGTTGATCCTCGTCATCTCTTTGTTGG 569
Query 584 TCCTAAGATCGGTGAAGGTGCTCATGCCAAAGTTTATGAGGGAAAGTATAGAAACCAAAC 643
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 570 TCCTAAGATCGGTGAAGGTGCTCATGCTAAAGTTTATGAGGGAAAGTATAGAAACCAAAC 629
Query 644 AGTGGCGATTAAGATTATTAAAAGAGGAGAGTCCCCTGAAGAGATTGCTAAACGAGATAA 703
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 630 AGTGGCGATTAAGATTATTAAAAGAGGAGAATCCCCTGAAGAGATTGCTAAACGAGATAA 689
Query 704 CCGGTTTGCGAGAGAGATTGCTATGTTGTCTAAAGTCCAGCACAAGAATTTAGTCAAGTT 763
||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||
Sbjct 690 CCGGTTTGCGAGAGAGATTGCTATGCTGTCTAAAGTCCAGCACAAGAATTTGGTCAAGTT 749
Query 764 CATTGGAGCGTGCAAAGAACCCATGATGGTTATAGTTACTGAGCTTCTACTAGGCGGTAC 823
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 750 CATTGGAGCGTGCAAAGAACCCATGATGGTTATAGTTACCGAGCTTCTACTAGGCGGTAC 809
Query 824 ATTGCGTAAATATCTAGTCAGCTTACGGCCAAAGCGTTTAGACATTCGTTTGGCTGTTGG 883
|||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 810 ATTGCGAAAATATCTAGTGAGCTTACGGCCAAAGCGTTTAGACATTCGTTTGGCTGTTGG 869
Query 884 TTTTGCTCTTGACATTGCTCGTGCAATGGAATGTTTACATTCCCACGGTATCATTCACCG 943
|||||||||||||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct 870 ATTTGCTCTTGACATTGCTCGTGCAATGGAATGTTTACATTCCCATGGAATCATTCACCG 929
Query 944 CGATCTTAAACCAGAGAATTTGATCTTATCAGCGGATCATAAGACAGTGAAACTCGCTGA 1003
||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||
Sbjct 930 CGATCTTAAACCAGAGAATTTGATCTTATCAGCAGATCATAAGACAGTGAAACTTGCTGA 989
Query 1004 TTTCGGTTTAGCTAGAGAAGAATCATTAACCGAGATGATGACCGCAGAGACTGGTACATA 1063
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 990 TTTCGGTTTAGCTAGAGAAGAATCATTAACCGAGATGATGACCGCAGAGACTGGTACATA 1049
Query 1064 CCGATGGATGGCCCCCGAGCTCTACAGTACGGTTACGTTAAGGCAAGGAGAGAAGAAACA 1123
||||||||||||||| ||||| |||||||||||||| |||||||||||||||||||||||
Sbjct 1050 CCGATGGATGGCCCCTGAGCTTTACAGTACGGTTACATTAAGGCAAGGAGAGAAGAAACA 1109
Query 1124 CTATAATCATAAAGTAGATGCTTACAGCTTTGCCATTGTCTTGTGGGAACTTATTCTCAA 1183
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1110 TTATAATCATAAAGTAGATGCTTACAGCTTCGCCATTGTCTTGTGGGAACTTATTCTCAA 1169
Query 1184 CAAGTTACCATTTGAAGGCATGTCAAATCTACAAGCAGCATATGCTGCTGCATTCAAGAA 1243
|||||||||||||||||||||||| |||||||||||||| |||||||| |||||||||||
Sbjct 1170 CAAGTTACCATTTGAAGGCATGTCCAATCTACAAGCAGCCTATGCTGCAGCATTCAAGAA 1229
Query 1244 CTTGAGGCCAAGTGCAGAGGATTTACCAGGAGACTTAGAGATGATTGTAACTTCATGCTG 1303
||||||||| |||||||| ||| |||||||||| ||||||||||||||||||||||||||
Sbjct 1230 CTTGAGGCCGAGTGCAGAAGATCTACCAGGAGATTTAGAGATGATTGTAACTTCATGCTG 1289
Query 1304 GAAAGAAGATCCTAACGAACGGCCAAATTTCACAGAGATAATTCAAATGCTCCTCCGTTA 1363
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1290 GAAAGAAGATCCTAACGAACGGCCAAATTTCACAGAGATAATCCAAATGCTCCTCCGTTA 1349
Query 1364 CCTCACCACTGTTTCG---GCACCACAGATCATTCCTCCACCGAATCGACGAGTCTTCTC 1420
||||||||||||||| ||||||||||| || |||||||||||||||||||| |||||
Sbjct 1350 CCTCACCACTGTTTCATCAGCACCACAGATTATCCCTCCACCGAATCGACGAGTTTTCTC 1409
Query 1421 ATCAGAAAACATAGTTTTATCACCGGAATCTCCCGGAACTTGCTCTCTGATGTCTGTCAG 1480
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1410 TTCAGAAAACATAGTTTTATCACCGGAATCTCCCGGAACATGCTCTCTGATGTCTGTCAG 1469
Query 1481 AGACGGAGACGTTTCTCGTCAGACCGTTAACACTGCTGATTCATCGGAGAAACAAACAAA 1540
||| |||||||||||||| |||||||||||||| || ||||| || ||||||||| ||||
Sbjct 1470 AGATGGAGACGTTTCTCGCCAGACCGTTAACACGGCAGATTCGTCAGAGAAACAACCAAA 1529
Query 1541 AGGAAGCTTCTTCTCCTGCTGCTCATAGATGA----TGTAT--T-TCGTTG-T-GTAATC 1591
|||||||||||||||||||||||||||||||| | ||| | | ||| | ||||||
Sbjct 1530 AGGAAGCTTCTTCTCCTGCTGCTCATAGATGAAAAATTTATAATATATTTGGTTGTAATC 1589
Query 1592 TGTAAAGAA-AACGAGAGGAAAGT 1614
|||||| || |||| |||||||||
Sbjct 1590 TGTAAA-AATAACGGGAGGAAAGT 1612
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65058138460
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5