BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G27570.1
Length=1475
Score E
Sequences producing significant alignments: (Bits) Value
Ahg484547 jgi|Araly1|484547|fgenesh2_kg.5__539__AT3G27570.1 1999 0.0
Ahg493935 jgi|Araly1|493935|fgenesh2_kg.7__3368__AT5G40510.1 451 6e-126
> Ahg484547 jgi|Araly1|484547|fgenesh2_kg.5__539__AT3G27570.1
Length=1347
Score = 1999 bits (1082), Expect = 0.0
Identities = 1267/1354 (94%), Gaps = 21/1354 (2%)
Strand=Plus/Plus
Query 26 AAAATGTTTCTTTTTCGAAAATTTATTTAAATGATAACGAAATTTACATCTCCATTTCGA 85
||||||||||||||||||||| |||||||||||| ||||||||| |||||| ||||||||
Sbjct 1 AAAATGTTTCTTTTTCGAAAAATTATTTAAATGAAAACGAAATTAACATCTTCATTTCGA 60
Query 86 TTGATTCGcttcttcaactctctctcttcttcttcttctATTTGCTTCTGTGAAACCCTA 145
||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||
Sbjct 61 TTGATTCGCTTCTTCAACTCTCTCTCTTCTTCTTCTTCTATCTGCTTCTGCGAAACCCTA 120
Query 146 GATTTTGGTGTGAGGAAGAAGACTTCAATGGCGGAAGAAGTAGCAGAGAACGTTAACGCA 205
||||||||||| ||||||| ||||||||||||| |||||||||||||||||||||||
Sbjct 121 GATTTTGGTGT---GAAGAAGCCTTCAATGGCGGAGGAAGTAGCAGAGAACGTTAACGCT 177
Query 206 GTCCCGGTTTCGGAAGACGAGCTTTACGGATTTAAACGATCGGAGATGTACAGTGGTACT 265
|| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 178 GTGCCGGTTTCGGAAGACGAGCTTTATGGATTTAAACGATCGGAGATGTACAGTGGTACT 237
Query 266 CTCGCCGGTTCCGTTGGTCCGTACGGTCGTCATGTTTTCCTTTGTTACAAGAGTCATGAG 325
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 238 CTCGCCGGTTCCGTTGGTCCGTACGGTCGTCATGTTTTCCTTTGTTATAAGAGTCATGAG 297
Query 326 ACTTGGCTTCCTCGTGTTGAAACTGAAGGACTTCCTCAGCGTTTCGCGAAGTTGTTTAAG 385
||||||||||||||||||||||||||||| ||||||||| ||||||| || | |||||||
Sbjct 298 ACTTGGCTTCCTCGTGTTGAAACTGAAGGTCTTCCTCAGAGTTTCGCTAAATCGTTTAAG 357
Query 386 GATCGTAAAGCTGATTTCGCTGTTGAGACGAAGCTTACggtgtgtggtggtggtggtgAA 445
||||| ||||||||||||| ||||||||||||||||| | |||| ||||||||||||||
Sbjct 358 GATCGGAAAGCTGATTTCGGAGTTGAGACGAAGCTTAC-G-GTGT-GTGGTGGTGGTGAA 414
Query 446 TCTGATGGAGATGTGTTGATTTTCCCGGAGATGGTTAGATACAAGGCGATTCAGGACACA 505
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 415 TCTGATGGAGATGTGTTGATTTTCCCGGAGATGGTTAGATACAAGGCGATTCAGGAGACG 474
Query 506 GATGTGGATGCTTTTGTGGAAGATGTGCTTGTGAAAGGAAAAACATGGACTTCTGGGATT 565
||||||||||||||||||||||||||||||| |||||||||| |||||||||||||| ||
Sbjct 475 GATGTGGATGCTTTTGTGGAAGATGTGCTTGCGAAAGGAAAACCATGGACTTCTGGGGTT 534
Query 566 CAGGAAGAGTTGACTGGTTCCTTTGTGTTTGTGTGCGCTCATGGTAGCCGAGACAAGAGA 625
||||||||||| | |||||| |||||||||||||| |||||||||||||| || ||||||
Sbjct 535 CAGGAAGAGTTAAGTGGTTCATTTGTGTTTGTGTGTGCTCATGGTAGCCGGGATAAGAGA 594
Query 626 TGTGGTGTTTGTGGACCAGTTCTTATGGAGAAGTTCGAGCAGGAGATAAGTTCACGTGGA 685
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||
Sbjct 595 TGTGGTGTTTGTGGACCAGTTCTTATGGAGAAGTTCGAGCAGGAGATAGGTTCACGAGGA 654
Query 686 CTTTCAGACAAAATCTTTGTTTTGCCGTGTTCTCATATCGGTGGGCACAAGTATGCTGGA 745
|||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 655 CTTTCAGAAAAAATCTTTGTTTTGCCGTGTTCTCATATCGGTGGACACAAGTATGCTGGA 714
Query 746 AATTTGATTGTCTTCAGCCCTGATTCAGCTGGAAATGTTTCTGGCCATTGGTATGGCTAT 805
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 715 AATTTGATTGTCTTCAGCCCTGATTCAGCTGGAAATGTTTCTGGCCACTGGTATGGCTAT 774
Query 806 GTGACTCCTGATGACGTGCCTGCAATGCTTGATCAGCATATTGCAAAAGGAGAAATCATT 865
||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||
Sbjct 775 GTGACTCCTGATGACGTTCCTGCAATGCTTGATCAGCATATTGCAAATGGAGAAATCATA 834
Query 866 CAAAACCTTTCCAGAGGCCAGATGAGACTAAGACCCGAGGGTGAGGAAGCTGAGAAAGAG 925
|||||||||||||| || |||||||||||||||||| |||||||||||||| ||||||
Sbjct 835 CAAAACCTTTCCAGGGGAGGGATGAGACTAAGACCCGACGGTGAGGAAGCTGAAAAAGAG 894
Query 926 GATGAGCATAAAATCCCAAACGGAAACAGTGTAATGGTGGAAGAACGCGAACCTGTGGAG 985
||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||
Sbjct 895 GATGAGCATAAAATCCCAAACGGAAACAGTGTAGTGGTGGAAGCACGCGAACCTGTGGAG 954
Query 986 CAGAAAGGGTTCACAGGAGGTTGTTGCCAAGGTGCAAACGGAGTTTCATGTTGCCAAGAA 1045
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 955 CAGAAAGGGTTCACAGGAGGTTGTTGCCAAGGTGCAAACGGAGTTTCATGTTGCCAAGAA 1014
Query 1046 CAAGCTGCAGAGCCAGTCAAGAAAGAAGGATGCATGAAGCTAAACTGGTTGAAATCGATG 1105
|||||| |||| ||||| |||||||||| || |||||||||||||||||||| |||||||
Sbjct 1015 CAAGCTCCAGAACCAGTGAAGAAAGAAGAATCCATGAAGCTAAACTGGTTGAGATCGATG 1074
Query 1106 GGGAAAGAAGAGGTTCTCTTGGGAGCAGCAGTAGTTTCAGCTGTCGCAACCGTTGCCGTG 1165
||||||||||||||||||||||||||||||| ||| ||||||||||||||| | ||||||
Sbjct 1075 GGGAAAGAAGAGGTTCTCTTGGGAGCAGCAGCAGTATCAGCTGTCGCAACCATAGCCGTG 1134
Query 1166 GCTTACAGCATTTACAGAAGGTCAGGTTAAGAACCTGAACC-ACCCTCCTCTTTTT-ACA 1223
||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct 1135 GCTTACAGCATTTACAGAAGGTCAGGTTAAGAACCTGAACCCACCCTCCTCTTTTTTACC 1194
Query 1224 CTTTTAAGAAGAAACTTTATTTTTGGTAGCCATATTATA--G-AAG-TAAAGGAAGAAAA 1279
|||| || || |||||||||||||||||||||||||||| | ||| |||||||| ||||
Sbjct 1195 CTTTAAAAAA-AAACTTTATTTTTGGTAGCCATATTATATAGCAAGGTAAAGGAAAAAAA 1253
Query 1280 GAAAA-----CATGGAGAGGT-A-A-TAATCTTTTGGAACTATATAACCATCATTTGGTT 1331
|||| ||||||||||| | | ||||||||||||||||| ||||||||||||||||
Sbjct 1254 AAAAAAAAAACATGGAGAGGTGATAATAATCTTTTGGAACTATGTAACCATCATTTGGTT 1313
Query 1332 TCGGTATGGGCAATGCAGGAATGGGATGTAATCT 1365
|| ||||||||||| |||||||| ||||||||||
Sbjct 1314 TCCGTATGGGCAATACAGGAATGTGATGTAATCT 1347
> Ahg493935 jgi|Araly1|493935|fgenesh2_kg.7__3368__AT5G40510.1
Length=1354
Score = 451 bits (244), Expect = 6e-126
Identities = 607/773 (79%), Gaps = 61/773 (8%)
Strand=Plus/Plus
Query 292 TCGTCATGTTTTCCTT-TGTTACAAGAGTCATG-AGACTTGGCTTC-CTCGTGTTGAA-A 347
|||||||||||| || | ||| |||| || || || |||||| || | | ||||||| |
Sbjct 179 TCGTCATGTTTTTGTTCT-TTATAAGACTCCTGAAG-CTTGGC-TCTCACATGTTGAAGA 235
Query 348 CTGAAGGACTT-CCTCAGCGTTTCGCGAAGTTGTTTAAGGATCGTAAAGCTGAT-TTCGC 405
||||| || ||||| |||||||| | |||| |||| ||||| ||| ||||| |||
Sbjct 236 -AGAAGG-TTTACCTCAACGTTTCGCTACGTTGCTTAAAGATCGAAAATCTGATCTTC-T 292
Query 406 TGTTGAGACGAAGCTTACggtgtgtggtggtggtggtgAATCTGATGGAGATGTGTTGAT 465
|||| |||||||||||| ||| | ||| ||||||| ||||||||| |||||||||||
Sbjct 293 TGTTCAGACGAAGCTTA--ATGTAT-GTGAAGGTGGTGGATCTGATGGTGATGTGTTGAT 349
Query 466 -TTTCCCGGAGATGGTTAGATACAAGGCGATTCAGGACACAGATGTGG-ATGCTTTTGTG 523
||| ||||| ||| | |||||||||| | || |||| || ||||||| | | |||| |
Sbjct 350 CTTT-CCGGATATGATCAGATACAAGGGGGTTAAGGATACGGATGTGGAAGGGTTTT-TT 407
Query 524 GAAGATGTGCTTGTGAAAGGAAAAACATGGACTTCTGGGATTCAGGAAGAGTTGA-CTGG 582
|||||||| |||||||| || || |||||| ||||||||| || |||||| | | ||||
Sbjct 408 GAAGATGTTCTTGTGAATGGGAAGCCATGGAGTTCTGGGATACAAGAAGAGAT-ATCTGG 466
Query 583 TTCCTTTGTGTTTGTGTGCGCTCATGGTAGCCGAGACAAGAGATGTGGTGTTTGTGGACC 642
| ||||| |||||||| |||||| ||| |||||||||||||||||||||||||||||
Sbjct 467 AACATTTGTATTTGTGTGTACTCATGCTAGTCGAGACAAGAGATGTGGTGTTTGTGGACC 526
Query 643 AGT--TCTTATGGAGAAGTTCGAGCAGGAGATAAGTTCACGTGGACTTTCAGACAAAATC 700
||| ||||| | ||| |||| ||||||||||| |||| |||||||| || ||| | ||
Sbjct 527 AGTCATCTTA-G-AGAGGTTCAAGCAGGAGATAGGTTCTCGTGGACTCTCGGACCAGAT- 583
Query 701 TTTGTTTTGCCG-TGTTCTCATATCGGTGGGCACAAGTATGCTGGAAATTTGATTGTCTT 759
| | | || |||||||| | || ||||||||||||||| ||||||||| ||||
Sbjct 584 TACGCTGAAACGATGTTCTCACGTTGGACAGCACAAGTATGCTGGTAATTTGATTATCTT 643
Query 760 CAGCCCTGATTCAGCTGGAAATGTTT-CTGGCCATTGGTATGGCTATGTGACTCCTGATG 818
||| ||||||||||||||||| | || ||||| |||||||||||||||| ||||||||||
Sbjct 644 CAGTCCTGATTCAGCTGGAAA-GATTACTGGCAATTGGTATGGCTATGTAACTCCTGATG 702
Query 819 ACGTGCCTGCAAT-GCTTGATCAGCATATTGCAAAAGGAGAAATCATTCAAAACCTTTCC 877
| || |||| ||| |||||| || ||||||||||||||||||||||| |||| |||
Sbjct 703 ATGTACCTG-AATTGCTTGACCAACATATTGCAAAAGGAGAAATCATACAAAGGATTTGG 761
Query 878 AGAGGCCAGATGAGACTAAGACCCG-AGGGTGAGGAAGCTGAGAAAGAGGATGAGCATAA 936
|| ||||||||| ||||| || | ||| ||| | ||||||||| | |||| || ||
Sbjct 762 AGGGGCCAGATGGGACTA---CCTGGAGG-TGA--A-GCTGAGAAACTGCATGAACAGAA 814
Query 937 A---ATCCCAAACGGAAAC-AGTGTAATGGTGGAAGAACGCGAACCTGTGGAGCAGAAAG 992
| || |||||||| ||| | |||| | || |||| | || | |||| || |
Sbjct 815 AGTGATACCAAACGGTAACGA-TGTA--G-TGAAAGA--G-GA----G---AGCA-AA-G 858
Query 993 GGTTCACAGGAGGTTGTTGCCAAGG-TGCAAACGGAGTTTCATGTTGCCAAGA 1044
||||||||||||| ||||| || || | | ||||||||||| |||||||||||
Sbjct 859 GGTTCACAGGAGGATGTTGTCAGGGAT-CGAACGGAGTTTCGTGTTGCCAAGA 910
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55192765005
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5