BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G27580.1
Length=2483
Score E
Sequences producing significant alignments: (Bits) Value
Ahg936523 jgi|Araly1|936523|scaffold_500714.1 2612 0.0
> Ahg936523 jgi|Araly1|936523|scaffold_500714.1
Length=1805
Score = 2612 bits (1414), Expect = 0.0
Identities = 1675/1796 (93%), Gaps = 37/1796 (2%)
Strand=Plus/Plus
Query 472 GAATTTTGTCGAACACCTTCAATGGATTCTTCTTCATCAGTCGTTTACGTTGGTTCATCA 531
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 GAATTGTGTCGAACACCTTCAATGGATTCTTCTTCATCAGTCGTTTACGTTGGTTCATCA 60
Query 532 TCCAAATCCAGAAACTTTCAATCTAAATCCAAAGGTTCGATTACATCTTTCTCAATCGAT 591
|||||| |||||||| ||| | | |||||||||||||||||||||||||| |||||||||
Sbjct 61 TCCAAACCCAGAAACCTTCCAGCCAAATCCAAAGGTTCGATTACATCTTTTTCAATCGAT 120
Query 592 TCAAGAGGCACCAAGAAATC---A-----A-TGAAGACGTTATTAATCCCAGAACCAGAA 642
|||||| ||||||||||||| | | |||||| | ||||| ||||||||||||
Sbjct 121 TCAAGAAGCACCAAGAAATCAGAACGGCCATTGAAGAAGGCGTTAATACCAGAACCAGAA 180
Query 643 CCAACTTCCCCTGAAGTTATAGAAAGTTCTGTGTCCTCTGTTTCAGCTGAATCCGAGACA 702
|||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct 181 ACAACTTCCCCTGAAGTTATAGAAAGTTCTGAATCCTCTGTTTCAGCTGAATCCGAAACA 240
Query 703 CCAATTTCGATTATACGTAAGAAGAAACAATCAGAGCCAAGGTTTTACTCTAGCCCAACC 762
||||||||||||||||||||||||||||||||||||||||| | |||| ||||||||||
Sbjct 241 CCAATTTCGATTATACGTAAGAAGAAACAATCAGAGCCAAGATATTACCCTAGCCCAACG 300
Query 763 AACACGTTTT----------A--C-ACA--GAAGCAAAACAAAGCTTTACCAACACAGAA 807
|||||||||| | | ||| ||||||||||| ||||||||||||||||||
Sbjct 301 AACACGTTTTACACAGCGCCACTCTACACGGAAGCAAAACAGAGCTTTACCAACACAGAA 360
Query 808 TTCAGTGAATGTGCAAGCATAAGCACTATTGGTATAGGTGGTATTGATTTGGAGAAGAAT 867
|||||||||||||||||||| ||||||| |||||||| ||||| |||||||||||||||
Sbjct 361 GTCAGTGAATGTGCAAGCATATGCACTATCGGTATAGGCGGTATCGATTTGGAGAAGAAT 420
Query 868 GGTGTAATGATATACAGAGGAAGTATAGGGAGTGATGTTAGTGATGAGAGTAGCTCAAGT 927
||||||||||||||||||||||||| |||||||||||||||||| |||||||||| |||
Sbjct 421 GGTGTAATGATATACAGAGGAAGTACAGGGAGTGATGTTAGTGACGAGAGTAGCTTGAGT 480
Query 928 GGTCTGAGTAATGCAGCTTACAAGCCACATAGAGATAATAACGATAAGCGTTGGGTTGCG 987
|| |||||||||||||||| ||||||||||||| |||||||||||||||||||||||||
Sbjct 481 AGTATGAGTAATGCAGCTTATAAGCCACATAGAGCTAATAACGATAAGCGTTGGGTTGCG 540
Query 988 ATTCAGGAGGTTCGTTCTCGGGTTGGTTCGTCGCTTGAGGCTAAAGATTTCAAGCTGATT 1047
|| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 ATACAGGAGGTTCGGTCTCGGGTTGGTTCGTCGCTTGAGGCTAAAGATTTCAAGCTGATG 600
Query 1048 AAGA-AG-TTAGGAGGAGGTGATATTGGTAATGTTTACTTAGCTGAGTTGATTGGAACTG 1105
|| | | || ||||||||||| ||||| |||||||||||||||||||||||||||||||
Sbjct 601 AA-ACGGCTT-GGAGGAGGTGACATTGGGAATGTTTACTTAGCTGAGTTGATTGGAACTG 658
Query 1106 GAGTGAGTTTTGCTGTGAAAGTTATGGAGAAAGCTGCTATTGCAGCGAGGAAGAAGCTTG 1165
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 659 GAGTGAGTTTTGCTGTGAAAGTTATGGAGAAAGCAGCTATTGCAGCGAGGAAGAAGCTTG 718
Query 1166 TTAGAGCTCAGACTGAGAAAGAGATACTTCAATCGTTAGATCATCCTTTCTTGCCTACGC 1225
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 719 TTAGAGCTCAGACTGAGAAAGAGATACTTCAATCGTTAGATCATCCGTTCTTGCCTACGC 778
Query 1226 TTTACTCACATTTCGAAACAGAG-ATGAATTCTTGTTTGGTTATGGAGTTTTGTCCTGGT 1284
|||| |||||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 779 TTTATTCACATTTCGAAACAGAGAAT-CATTCTTGTTTGGTTATGGAGTTTTGTCCTGGT 837
Query 1285 GGTGATTTACATTCTCTTAGACAAAAACAGCGTGGAAAGTACTTCCCTGAGCAAGCTGCT 1344
||||||||||||||||| | |||||||||||||||||||||||||||||||| ||||||
Sbjct 838 GGTGATTTACATTCTCTCCGGCAAAAACAGCGTGGAAAGTACTTCCCTGAGCAGGCTGCT 897
Query 1345 AGATTTTATGTTGCTGAAGTTCTTCTTGCTATGGAGTATCTACATATGCTTGGGATCATA 1404
|| ||||||||||||||||| |||||||| ||||| |||||||| ||||||||||||||
Sbjct 898 AGGTTTTATGTTGCTGAAGTGCTTCTTGCGATGGAATATCTACACATGCTTGGGATCATT 957
Query 1405 TACAGAGACCTTAAGCCTGAGAATGTTTTAGTTCGTGAAGATGGACATATAATGCTATCT 1464
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 958 TACAGAGACCTTAAGCCTGAGAATGTTTTAGTTCGTGAAGATGGACATATAATGCTATCC 1017
Query 1465 GATTTCGACCTCTCTTTGAGATGTGCAGTCTCTCCAACGTTGGTTCGGTTCGCAGCAATC 1524
|||||||| ||||| ||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1018 GATTTCGATCTCTCCCTGAGATGTGCAGTCTCTCCAACGTTGGTTCGTTTCGCAGCAATC 1077
Query 1525 ACGCTTGAGTCCAAAAGCTCAAGCTACTGTATCCAACCAACATGTGTAGACCAATCGAGC 1584
||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1078 ACGCTCGAGTCCAAAAGCTCAAGCTACTGTATCCAGCCAACATGTGTAGACCAATCGAGC 1137
Query 1585 TGCATTGTTCAGCCTGACTGCATCCAGCCAGTGTGTTTCACTCCTCGGTTCTTGTCTAAA 1644
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1138 TGCATTGTTCAACCTGACTGCATCCAGCCAGTGTGTTTCACTCCTCGGTTCTTGTCTAAA 1197
Query 1645 GGAAAGCACAGGAAGAAGTCGAACGATATGAGCCGCCAAATCAGACCGCTTCCTGAGCTG 1704
|||||||||| ||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 1198 GGAAAGCACAAGAAGAAGTCGAACGATATGAGCCGCCAAATCAGACCGCTCCCCGAGCTT 1257
Query 1705 ATAGCTGAACCGACTAGCGCAAGGTCAATGTCGTTTGTTGGTACACACGAGTACCTAGCA 1764
|| ||||||||||||||||||||||||||||||||||| || |||||||||||| |||||
Sbjct 1258 ATCGCTGAACCGACTAGCGCAAGGTCAATGTCGTTTGTCGGCACACACGAGTACTTAGCA 1317
Query 1765 CCAGAGATTATCAAAGGAGAAGGTCATGGAAGCGCGGTTGACTGGTGGACATTCGGGATA 1824
||||||||||||||||||||||| || || |||||||||||||||||||||||||||||
Sbjct 1318 CCAGAGATTATCAAAGGAGAAGGCCACGGCAGCGCGGTTGACTGGTGGACATTCGGGATT 1377
Query 1825 TTCCTCTATGAGCTTCTATTTGGGATAACACCGTTTAGAGGAGGCGATAACAGAGCGACA 1884
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1378 TTCCTCTATGAGCTTCTATTCGGGATAACACCGTTTAGAGGAGGCGATAACAGAGCGACA 1437
Query 1885 CTCTTTAACGTAGTTGGACAGCCATTGCGGTTTCCCGAGCATCCAAATGTGAGCTTTGCA 1944
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1438 CTCTTTAACGTAGTTGGACAGCCATTGCGGTTTCCCGAGCACCCAAATGTGAGCTTTGCA 1497
Query 1945 GCTAGAGATTTGATCAGAGGATTGCTAGTGAAAGAGCCTCAGCATCGGTTGGCTTATAGA 2004
|||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1498 GCTAGAGACTTGATCAGAGGATTGCTAGTGAAAGAGCCTCAGCACCGGTTGGCTTATAGA 1557
Query 2005 AGAGGAGCTACTGAGATTAAGCAGCATCCGTTTTTCCAAAGTGTGAATTGGGCTTTGATC 2064
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1558 AGAGGAGCTACTGAGATTAAGCAACATCCGTTTTTCCAAAGTGTGAATTGGGCTTTGATC 1617
Query 2065 AGATGCACCAGTCCACCACAGATTCCTCAACCGGTTAAACCAATGGATCAAGCTCAC-AG 2123
||||||||||||||||||||||| ||||||||||||||||||||||||||||||| | ||
Sbjct 1618 AGATGCACCAGTCCACCACAGATCCCTCAACCGGTTAAACCAATGGATCAAGCTC-CTAG 1676
Query 2124 TGTTCGTCATGGTTTTAGTCAAGGACATGGACATGTTGGTT-ATGATAA---GCCTCCTA 2179
| ||||||||||| ||||||||||||||||||||| || || ||||||| ||||||||
Sbjct 1677 TCTTCGTCATGGTCTTAGTCAAGGACATGGACATGGTG-TTCATGATAATAAGCCTCCTA 1735
Query 2180 CTGTGGATGTGAAGCCTTCTGGTAATTATTTGGAAATTGATTTCTTCTGATTTGTG 2235
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1736 CTGTGGATGTGAAGCCTTCTGGTAATTATTTGGAAATTGATTTCTTCTGATTTGTG 1791
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 93587731965
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5