BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G27600.1
Length=942
Score E
Sequences producing significant alignments: (Bits) Value
Ahg347136 jgi|Araly1|347136|fgenesh1_pg.C_scaffold_5000528 459 2e-128
Ahg946752 jgi|Araly1|946752|scaffold_702981.1 108 9e-23
> Ahg347136 jgi|Araly1|347136|fgenesh1_pg.C_scaffold_5000528
Length=1332
Score = 459 bits (248), Expect = 2e-128
Identities = 435/520 (84%), Gaps = 33/520 (6%)
Strand=Plus/Plus
Query 9 TTACATTTCCACTGGAGGGTTGGTGGTTGAGAAG-GTGATGAGGTATCTTGTTGTAGGTG 67
||||||||||| || ||||||||| ||||| || || |||||| ||||||||| || ||
Sbjct 312 TTACATTTCCAAAGGTGGGTTGGTGTTTGAG-AGCGTCATGAGGCATCTTGTTGCAGATG 370
Query 68 ACGCAAGATACAACTTTATGGGTATTTCAGACCCCTTTCACCCGTTTTACCAGCA-AAGG 126
| |||||||||| |||||||| || ||| | ||||||||| ||||||||||||| || |
Sbjct 371 AAGCAAGATACAGCTTTATGGCTAGTTCCCATCCCTTTCACGCGTTTTACCAGCAGAA-G 429
Query 127 CTTACCCAGTACCGTTCTCTGAATCAACAAGAC-GA--AGCTAATCTTGATTATGATGCT 183
|||||| | || |||||| | |||||||||||| || ||||||||||||||||||||||
Sbjct 430 CTTACCGAATATCGTTCTATCAATCAACAAGACGGAGGAGCTAATCTTGATTATGATGCT 489
Query 184 ACTCTTGCTGCTTACATGCGAAAGGCTACTGAATTCCGTTCTCGGATTCAACAAGAGGGA 243
|||||||||| ||||| || ||||||||| |||||||||||| |||||||||||||||||
Sbjct 490 ACTCTTGCTGTTTACAAGCAAAAGGCTACCGAATTCCGTTCTTGGATTCAACAAGAGGGA 549
Query 244 CCTAATCTTGATGATGATGATGCTGATGCTGGTCAACGCATTGTTCTGCCACATCTTCTG 303
||||||||||| |||||| || || ||||||||||||||||||||||||| || ||||
Sbjct 550 GCTAATCTTGATTATGATGCTGATGCTGCTGGTCAACGCATTGTTCTGCCATATTTTCTC 609
Query 304 GAC-TATAGACTTCCAAAAGGGATGAGTGTCAAGAATTT-AGAACTATCAAGCTCACAAC 361
||| | ||||||||| ||||||||||||| |||| |||| |||||||| ||||||||| |
Sbjct 610 GACCT-TAGACTTCCTAAAGGGATGAGTGGCAAGGATTTTAGAACTATGAAGCTCACAGC 668
Query 362 ACAGTTTGGGGCTTGG---G-------TT-CAAG--G------AA-A---GAGATGGATT 398
||||||||||||||| | || | | | || | ||||||| ||
Sbjct 669 TCAGTTTGGGGCTTGGTATGGAAACGATTTCTGGCTGGGGTTCAAGAACAGAGATGGGTT 728
Query 399 TGAGTTTACGAATCCAACTGATAGTAAGTTCCCACGATTCACTCTATTTGTTCTTGAGTA 458
|||||||||||||||||||||||| ||||||||||| ||||||| |||||||| |||||
Sbjct 729 TGAGTTTACGAATCCAACTGATAGCAAGTTCCCACGTTTCACTCGGTTTGTTCTCGAGTA 788
Query 459 TTCAGAAGTATTTAAGGCACCTAAAGATCTGAAAGAAAAG 498
||||||||||||||| | ||||||||| |||||||||||
Sbjct 789 TTCAGAAGTATTTAATCCCCCTAAAGATTTGAAAGAAAAG 828
Score = 355 bits (192), Expect = 3e-97
Identities = 256/287 (89%), Gaps = 4/287 (1%)
Strand=Plus/Plus
Query 656 TGGATGTTGATGGTCGTGAGCTAAACATTATTGAGAAAACAGTGCAGTCGTTATCTGAAA 715
||| ||| || ||||||||| ||||||| |||||||||||||||||||||||||| ||||
Sbjct 1011 TGG-TGTCGAAGGTCGTGAGGTAAACATCATTGAGAAAACAGTGCAGTCGTTATCGGAAA 1069
Query 716 ACGTGGCGAGTTTCAAGGAGAAAATAGCCGCGGATAAACCGAAGAATCCCACCAGAGAAG 775
|||||||||||||||||||||||||||||| ||| |||||| ||||||||||||||
Sbjct 1070 ACGTGGCGAGTTTCAAGGAGAAAATAGCCGAGGAGGT-CCGAAGTATCCCACCAGAGAAA 1128
Query 776 CAGGTGATATTCGGAAAATCCGGGTTGTTAAAGGACAACAACAAGTCACTAGCATATTAA 835
|||||| ||||||||||| |||||||||| ||||||||||||| |||||||||| ||||
Sbjct 1129 CAGGTGTTATTCGGAAAAGCCGGGTTGTTGAAGGACAACAACAGGTCACTAGCACATTAC 1188
Query 836 AATGTAGGAGCAGGAGAAATCCTCACTTTGTCATTCTGTACGTGTGGGAGATAGACAGAT 895
||||| ||||||||||||||||| ||| |||| || ||||||||||||||| ||||||||
Sbjct 1189 AATGTGGGAGCAGGAGAAATCCTTACTCTGTCCTTGTGTACGTGTGGGAGAGAGACAGAT 1248
Query 896 TTGGACAAGCCTTGTT-TATGCACGGAAATGTTTTTCGACGCACTTG 941
|||||||||||||||| | ||||||||| ||||| | |||||||||
Sbjct 1249 TTGGACAAGCCTTGTTGT-TGCACGGAATTGTTTAACAACGCACTTG 1294
> Ahg946752 jgi|Araly1|946752|scaffold_702981.1
Length=1262
Score = 108 bits (58), Expect = 9e-23
Identities = 135/171 (79%), Gaps = 10/171 (6%)
Strand=Plus/Plus
Query 685 ATTGAGAAAACAGTGCAGTCGTTATCTGAAAACGTGGCGAGTTTCAAGGAGAAAATAGCC 744
||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1057 ATTGAGATCACAGTGCAGTCGTTATCGGAAAACGTGGCGAGTTTCAAGGAGAAAATAGCT 1116
Query 745 GCGGATAAACCGAAGAATCCCACCAGAGA-AG-CAGGTGATATTCGGAAAATCCGGG-TT 801
| ||| | | || | ||| | || | | | || || | | | |||||| | ||| ||
Sbjct 1117 GAGGAGATTC--AA-ATTCC-AGCAAACACACACAAGTTA-AGT-GGAAAAGCAGGGGTT 1170
Query 802 GTTAAAGGACAACAACAAGTCACTAGCATATTAAAATGTAGGAGCAGGAGA 852
||| | ||| ||||||||||||| ||| |||| ||||| |||| ||||||
Sbjct 1171 -TTAGACGACGACAACAAGTCACTTGCACATTACAATGTTGGAGTAGGAGA 1220
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34958714889
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5