BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G27610.2
Length=1417
Score E
Sequences producing significant alignments: (Bits) Value
Ahg484550 jgi|Araly1|484550|fgenesh2_kg.5__542__AT3G27610.1 1840 0.0
Ahg484032 jgi|Araly1|484032|fgenesh2_kg.5__24__AT2G01220.2 1258 0.0
> Ahg484550 jgi|Araly1|484550|fgenesh2_kg.5__542__AT3G27610.1
Length=1247
Score = 1840 bits (996), Expect = 0.0
Identities = 1168/1251 (93%), Gaps = 12/1251 (1%)
Strand=Plus/Plus
Query 3 TTTATCTTTCTGCTTTCACAGAGACGACGAGAGAAACAATGGCGGAGTCTGCGATCCGAA 62
||| ||||||||||| ||||||||| ||||||||||||||||| || |||||||||||||
Sbjct 1 TTTCTCTTTCTGCTTCCACAGAGACAACGAGAGAAACAATGGCAGACTCTGCGATCCGAA 60
Query 63 CCATCGTCGAATCAATTCACTCATCGCCGACGCAAGCCGTCGTGTATCTCTCCGGCGGTG 122
||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||
Sbjct 61 CCATCGTCGAATCAATTCACTCATCACCGACGCAAGCCGTCGTGTATCTTTCCGGCGGTG 120
Query 123 CCTCTCAGTCTTTAGGTTGGTTAATGTCAGTTCCTGGAGCTTCGAACACACTTCTCGAAG 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 121 CCTCTCAGTCTTTAGGTTGGTTAATGTCAGTTCCTGGAGCTTCGAACACACTTCTTGAAG 180
Query 183 CCGTGGTTCCGTATTCCATGATCTCTATGGTTCAATTACTCGGCAGGGTTCCGAACCAAC 242
|||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 181 CCGTGGTTCCATATTCCATGATCTCTATGGTTCAATTACTCGGAAGGGTTCCGAACCAAC 240
Query 243 ACTGTAGCCAATCAATGGCGAATGAAATGGCTTTGTTAGCTTATAATCGTGCTCTTAAGC 302
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 241 ACTGTAGCCAATCAATGGCGAATGAAATGGCTTTGTTAGCTTATAATCGGGCTCTTAAGC 300
Query 303 TTTCTAAGCCAGGATGTGCGGTTCTTGGTGTTGGTTTTACTGGAACGTTAGCAACTTCTC 362
||||||| ||||||||||||||||||||||| |||||||| ||||| |||||||||||||
Sbjct 301 TTTCTAAACCAGGATGTGCGGTTCTTGGTGTCGGTTTTACGGGAACATTAGCAACTTCTC 360
Query 363 GTCCAAAGCGTGGGGATCATAGGTTCTTTTTGTCGATAAGAGCTTCCAACCGGATATGGG 422
||||||||||||||||||||||||||||||||||||||||||| ||| ||||| ||||||
Sbjct 361 GTCCAAAGCGTGGGGATCATAGGTTCTTTTTGTCGATAAGAGCATCCGACCGGGTATGGG 420
Query 423 AAACTTCAGTTACTCTAACAAAGGGAAAACGAAGCCGAGAGGAAGAAGATAAAGTGGCAA 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 AAACTTCAGTTACTCTAACAAAGGGAAAACGAAGCCGAGAGGAAGAAGATAAAGTGGCAA 480
Query 483 GCTCTGTACTGATTCAGGCTATGGCTAAGGCATGCCAAGTTTCTGAGACACTTGACTCTG 542
||| ||||||||| ||||||||||| || |||||||||||||||||||| ||||||||||
Sbjct 481 GCTGTGTACTGATACAGGCTATGGCCAAAGCATGCCAAGTTTCTGAGACCCTTGACTCTG 540
Query 543 GCTTGACTGATTCTGAGGTGCTTAATGAGTCTGTAATCCAGTTTAGTGAAGAAGAAGAAC 602
|||||||||| |||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct 541 GCTTGACTGAGTCTGAGGTGCTTAATGAGTCTGAAACCCAGTTTAGTGAAGAAGAAGAAC 600
Query 603 TAGAACAGCTTATAGATGGACAAATATGCTCTAAGATCTATCCATTTTCTAAAGCAGAAT 662
|||| |||||||||||||||||| | ||||||||||| ||||||||||||||||||||||
Sbjct 601 TAGAGCAGCTTATAGATGGACAATTGTGCTCTAAGATTTATCCATTTTCTAAAGCAGAAT 660
Query 663 CATACGGGTCGGATAAAGATAGAAAGATTATACTGCCTGGTTCTTTTAACCCATTACATG 722
|||| || |||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 661 CATATGGATCGGATAAAGATAGAAAGATTATACTGCCTGGTTCTTTTAACCCGTTACATG 720
Query 723 ACGGTGATCTCAAGCTGTTGGAAGCTGCTATGAGTGTTTCTGAGGAAGGAGGGTATCCAT 782
| ||| ||||||||||||||||||||||| |||||||| ||| | |||||||| ||||
Sbjct 721 AGGGTCATCTCAAGCTGTTGGAAGCTGCTCTGAGTGTTAGTGA--A-GGAGGGTACCCAT 777
Query 783 GTTTTGAAATATCTGCACTGAATGCAGACAAACCATCGCTTACAGTTACAGAGATTAAAG 842
||||||||||||| ||| | ||||||||||||||||| ||||||||| |||| |||||||
Sbjct 778 GTTTTGAAATATCCGCAGTAAATGCAGACAAACCATCCCTTACAGTTGCAGAAATTAAAG 837
Query 843 ATCGTGTCAAACAATTTGAAGTACTTGAAAAGACGGTAATAGTTTCAAATCAGCCTTTCT 902
|||| ||||| |||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 838 ATCGCGTCAAGCAATTTGAAGTACTTGAAAAGACGGTAATAGTTTCAAATCAGCCATTCT 897
Query 903 TCTACAAGAAAGCTGAACTCTTCCCAGGAAGCAGTTTTGTAATTGGTGCTGATACTGCAG 962
| ||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct 898 TTTACAAGAAAGCTGAACTCTTCCCAGGAAGCAGTTTTGTAATCGGTGCTGACACTGCAG 957
Query 963 CAAGGATTGTTAATCCAAAGTACTATGAAGGAAGCCACAAAAGGATGTTGGAGGTACTAG 1022
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 958 CAAGGCTTGTTAATCCAAAGTACTATGAAGGAAGCCACAAAAGGATGTTGGAGGTACTAG 1017
Query 1023 GTGATTGCAAACGAACAGGTTGCAAGTTCCTTGTTGGTGGCCGTAATGTAGATAGTGTAT 1082
|||| |||||||||||||||||||||||||||||||||||||||||||||||| ||| ||
Sbjct 1018 GTGACTGCAAACGAACAGGTTGCAAGTTCCTTGTTGGTGGCCGTAATGTAGATGGTGAAT 1077
Query 1083 TCAAGGTTCTTGACGATCAT-GAGATTCCAAAGGAAATAAGTACAATGTTTACCTCAATT 1141
| |||||||| |||||| || || |||||| | |||||||| | |||||||||||||||
Sbjct 1078 TTAAGGTTCTCGACGAT-ATTGACATTCCAGATGAAATAAGCAGTATGTTTACCTCAATT 1136
Query 1142 TCAGCAGATACATTCCGTATGGATATATCCTCTACAGAGCTAAGAAAGAACCAAGGAGGT 1201
|||| || |||||||| ||||||||||||||||| |||||||||||||||| ||||| |
Sbjct 1137 CCAGCGGAAACATTCCGAATGGATATATCCTCTACTGAGCTAAGAAAGAACCGAGGAGAT 1196
Query 1202 GTTATTTCATAATGCAG-AA---G---CTTGGAAAAAGAATATTGGCTTTT 1245
||||||||||||||||| || | |||| |||||||||||||||||||
Sbjct 1197 GTTATTTCATAATGCAGGAACTAGTGACTTGCAAAAAGAATATTGGCTTTT 1247
> Ahg484032 jgi|Araly1|484032|fgenesh2_kg.5__24__AT2G01220.2
Length=1414
Score = 1258 bits (681), Expect = 0.0
Identities = 1021/1185 (86%), Gaps = 24/1185 (2%)
Strand=Plus/Plus
Query 30 CGAGAGAAACAATGGCG-GAGTCTGCGATCCGAACCATCGTCGAATCAATTCACTCATCG 88
||||||||||||||| | ||| |||||||||| |||||||||||| | |||||||||||
Sbjct 1 CGAGAGAAACAATGG-GAGAGGCTGCGATCCGTACCATCGTCGAAGCCATTCACTCATCT 59
Query 89 CCGACGCAAGCCGTCGTGTATCTCTCCGGCGGTGCCTCTCAGTCTTTAGGTTGGTTAATG 148
|||||||| |||||||| || || |||||||||||||||| | ||||||||||||| |||
Sbjct 60 CCGACGCAGGCCGTCGTCTACCTTTCCGGCGGTGCCTCTCTGGCTTTAGGTTGGTTGATG 119
Query 149 TCAGTTCCTGGAGCTTCGAACACACTTCTCGAAGCCGTGGTTCCGTATTCCATGA-TCTC 207
|| |||||||||||||| ||||| |||||||||||||||||||| ||||||| || | ||
Sbjct 120 TCGGTTCCTGGAGCTTCCAACACGCTTCTCGAAGCCGTGGTTCCTTATTCCA-GAGTTTC 178
Query 208 TATGGTTCAATTACTCGGCAGGGTTCCGAACCAACACTGTAGCCAATCAATGGCGAATGA 267
|||||| |||||||||||||||||||||| |||||||||||||||| ||||||| || ||
Sbjct 179 TATGGTCCAATTACTCGGCAGGGTTCCGAGCCAACACTGTAGCCAAGCAATGGCCAAGGA 238
Query 268 AATGGCTTTGTTAGCTTATAATCGTGCTCTTAAGCTTTCTAAGCCAGGATGTGCGGTTCT 327
||||| |||||||| || ||||| || |||||||| ||||| ||||||| | |||||||
Sbjct 239 GATGGCCTTGTTAGCCTACAATCGGGCGCTTAAGCTCTCTAAACCAGGATATCCGGTTCT 298
Query 328 TGGTGTTGGTTTTACTGGAACGTTAGCAACTTCTCGTCCAAAGCGTGGGGATCATAGGTT 387
||| | |||||||| ||| | || |||||||||||||| |||||||||||||| |||||
Sbjct 299 CGGTCTCGGTTTTACGGGATCATTGGCAACTTCTCGTCCTAAGCGTGGGGATCACAGGTT 358
Query 388 CTTTTTGTCGATAAGAGCTTCCAACCGGATATGGGAAACTTCAGTTACTCTAACAAAGGG 447
||||||||| || ||||| ||||||||||| |||||| ||||||| |||||||| || |
Sbjct 359 CTTTTTGTCTATGAGAGCATCCAACCGGATTTGGGAATCTTCAGTCACTCTAACTAA--G 416
Query 448 AA--AACGAAGCCGAGAGGAAGAAGATAAAGTGGCAAGCTCTGTACTGATTCAGGCTATG 505
|| ||| |||||||| ||||||||||| ||| |||| | || |||||| |||||||||
Sbjct 417 AACTTACGCAGCCGAGAAGAAGAAGATAAGGTGTCAAGTTGTGCACTGATCCAGGCTATG 476
Query 506 GCTAAGGCATGCCAAGTTTCTGAGACACTTGACTCTGGCTTGACTGATTCTGAGGTG-CT 564
|| || |||||||||||||||| ||||||||||||||||||||| || ||||||||| ||
Sbjct 477 GCCAAAGCATGCCAAGTTTCTGGGACACTTGACTCTGGCTTGACCGAGTCTGAGGTGCCT 536
Query 565 TAATGAGTCTGTAATCCAGTTTAGTGAAGAAGAAGAACTAGAACAGCTTATAGATGGACA 624
| ||||||||| || ||| |||| ||||||| |||||||||| ||||||||| |||| |
Sbjct 537 T-ATGAGTCTGAAACCCACTTTACTGAAGAACAAGAACTAGAGCAGCTTATAAATGGGC- 594
Query 625 AATATG--CTCTAAGATCTATCCATTTTCTAAAGCAGAATCATACGGGTCGGATAAAGAT 682
| | || || |||||| |||||||||||| | ||| || | ||||| ||| |||||
Sbjct 595 ACT-TGACCTGTAAGATTTATCCATTTTCT---GGGGAAGCACATGGGTCTGATGAAGAT 650
Query 683 AGAAAGATTATACTGCCTGGTTCTTTTAACCCATTACATGACGGTGATCTCAAGCTGTTG 742
|||||||||||||| ||||| |||||||||||||||||||| ||| |||||||||| ||
Sbjct 651 AGAAAGATTATACTTCCTGGCTCTTTTAACCCATTACATGAAGGTCATCTCAAGCTATTA 710
Query 743 GAAGCTGCTATGAGTGTTTCTGAGGAAGGAGGGTATCCATGTTTTGAAATATCTGCACTG 802
|||| |||| |||| |||| || || || ||||| ||||||||||||||||| ||| |
Sbjct 711 GAAGTTGCTCTGAGGGTTTGTG-GG--GGCGGGTACCCATGTTTTGAAATATCCGCAATA 767
Query 803 AATGCAGACAAACCATCGCTTACAGTTACAGAGATTAAAGATCGTGTCAAACAATTTGAA 862
||||| ||||||||| ||||| ||||| || ||||||||||||||||||| |||||||||
Sbjct 768 AATGCCGACAAACCACCGCTTTCAGTTGCACAGATTAAAGATCGTGTCAAGCAATTTGAA 827
Query 863 GTACTTGAAAAGACGGTAATAGTTTCAAATCAGCCTTTCTTCTACAAGAAAGCTGAACTC 922
| | ||| |||||| | ||||||||||||||||| | ||||||||||||||||||||||
Sbjct 828 GCAGTTGGAAAGACAATTATAGTTTCAAATCAGCCATACTTCTACAAGAAAGCTGAACTC 887
Query 923 TTCCCAGGAAGCAGTTTTGTAATTGGTGCTGATACTGCAGCAAGGATTGTTAATCCAAAG 982
|||||||||||||||||||||||||| ||||| |||||||| ||| |||| ||| ||||
Sbjct 888 TTCCCAGGAAGCAGTTTTGTAATTGGCGCTGACACTGCAGCGAGGCTTGTCGATCTAAAG 947
Query 983 TACTATGAAGGAAGCCACAAAAGGATGTTGGAGGTACTAGGTGATTGCAAACGAACAGGT 1042
||||||||||||||| ||||||||||||||||| |||| |||||||||||||| ||||||
Sbjct 948 TACTATGAAGGAAGCTACAAAAGGATGTTGGAGATACTTGGTGATTGCAAACGGACAGGT 1007
Query 1043 TGCAAGTTCCTTGTTGGTGGCCGTAATGTAGATAGTGTATTCAAGGTTCTTGACGATCAT 1102
|||| ||||||||||||||||| ||||||||| ||||||| ||||||||||| |||| |
Sbjct 1008 TGCACTTTCCTTGTTGGTGGCCGCAATGTAGATGGTGTATTTAAGGTTCTTGAAGATCTT 1067
Query 1103 GAGATTCCAAAGGAAATAA--GTACAATGTTTACCTCAATTTCAGCAGATACATTCCGTA 1160
|| ||||| ||||||| | | ||| |||||| ||||||| ||||||||| |||| | |
Sbjct 1068 GATATTCCGGAGGAAATCATCG-ACA-TGTTTATCTCAATTCCAGCAGATAAATTCAGGA 1125
Query 1161 TGGATATATCCTCTACAGAGCTAAGAAAGAACCAAGGAGGTGTTA 1205
|||||||||||||||||||| ||||||| |||||||| ||| |||
Sbjct 1126 TGGATATATCCTCTACAGAGATAAGAAAAAACCAAGGGGGTATTA 1170
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52983530795
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5