BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G27610.2 Length=1417 Score E Sequences producing significant alignments: (Bits) Value Ahg484550 jgi|Araly1|484550|fgenesh2_kg.5__542__AT3G27610.1 1840 0.0 Ahg484032 jgi|Araly1|484032|fgenesh2_kg.5__24__AT2G01220.2 1258 0.0 > Ahg484550 jgi|Araly1|484550|fgenesh2_kg.5__542__AT3G27610.1 Length=1247 Score = 1840 bits (996), Expect = 0.0 Identities = 1168/1251 (93%), Gaps = 12/1251 (1%) Strand=Plus/Plus Query 3 TTTATCTTTCTGCTTTCACAGAGACGACGAGAGAAACAATGGCGGAGTCTGCGATCCGAA 62 ||| ||||||||||| ||||||||| ||||||||||||||||| || ||||||||||||| Sbjct 1 TTTCTCTTTCTGCTTCCACAGAGACAACGAGAGAAACAATGGCAGACTCTGCGATCCGAA 60 Query 63 CCATCGTCGAATCAATTCACTCATCGCCGACGCAAGCCGTCGTGTATCTCTCCGGCGGTG 122 ||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||| Sbjct 61 CCATCGTCGAATCAATTCACTCATCACCGACGCAAGCCGTCGTGTATCTTTCCGGCGGTG 120 Query 123 CCTCTCAGTCTTTAGGTTGGTTAATGTCAGTTCCTGGAGCTTCGAACACACTTCTCGAAG 182 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 121 CCTCTCAGTCTTTAGGTTGGTTAATGTCAGTTCCTGGAGCTTCGAACACACTTCTTGAAG 180 Query 183 CCGTGGTTCCGTATTCCATGATCTCTATGGTTCAATTACTCGGCAGGGTTCCGAACCAAC 242 |||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 181 CCGTGGTTCCATATTCCATGATCTCTATGGTTCAATTACTCGGAAGGGTTCCGAACCAAC 240 Query 243 ACTGTAGCCAATCAATGGCGAATGAAATGGCTTTGTTAGCTTATAATCGTGCTCTTAAGC 302 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 241 ACTGTAGCCAATCAATGGCGAATGAAATGGCTTTGTTAGCTTATAATCGGGCTCTTAAGC 300 Query 303 TTTCTAAGCCAGGATGTGCGGTTCTTGGTGTTGGTTTTACTGGAACGTTAGCAACTTCTC 362 ||||||| ||||||||||||||||||||||| |||||||| ||||| ||||||||||||| Sbjct 301 TTTCTAAACCAGGATGTGCGGTTCTTGGTGTCGGTTTTACGGGAACATTAGCAACTTCTC 360 Query 363 GTCCAAAGCGTGGGGATCATAGGTTCTTTTTGTCGATAAGAGCTTCCAACCGGATATGGG 422 ||||||||||||||||||||||||||||||||||||||||||| ||| ||||| |||||| Sbjct 361 GTCCAAAGCGTGGGGATCATAGGTTCTTTTTGTCGATAAGAGCATCCGACCGGGTATGGG 420 Query 423 AAACTTCAGTTACTCTAACAAAGGGAAAACGAAGCCGAGAGGAAGAAGATAAAGTGGCAA 482 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 421 AAACTTCAGTTACTCTAACAAAGGGAAAACGAAGCCGAGAGGAAGAAGATAAAGTGGCAA 480 Query 483 GCTCTGTACTGATTCAGGCTATGGCTAAGGCATGCCAAGTTTCTGAGACACTTGACTCTG 542 ||| ||||||||| ||||||||||| || |||||||||||||||||||| |||||||||| Sbjct 481 GCTGTGTACTGATACAGGCTATGGCCAAAGCATGCCAAGTTTCTGAGACCCTTGACTCTG 540 Query 543 GCTTGACTGATTCTGAGGTGCTTAATGAGTCTGTAATCCAGTTTAGTGAAGAAGAAGAAC 602 |||||||||| |||||||||||||||||||||| || ||||||||||||||||||||||| Sbjct 541 GCTTGACTGAGTCTGAGGTGCTTAATGAGTCTGAAACCCAGTTTAGTGAAGAAGAAGAAC 600 Query 603 TAGAACAGCTTATAGATGGACAAATATGCTCTAAGATCTATCCATTTTCTAAAGCAGAAT 662 |||| |||||||||||||||||| | ||||||||||| |||||||||||||||||||||| Sbjct 601 TAGAGCAGCTTATAGATGGACAATTGTGCTCTAAGATTTATCCATTTTCTAAAGCAGAAT 660 Query 663 CATACGGGTCGGATAAAGATAGAAAGATTATACTGCCTGGTTCTTTTAACCCATTACATG 722 |||| || |||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 661 CATATGGATCGGATAAAGATAGAAAGATTATACTGCCTGGTTCTTTTAACCCGTTACATG 720 Query 723 ACGGTGATCTCAAGCTGTTGGAAGCTGCTATGAGTGTTTCTGAGGAAGGAGGGTATCCAT 782 | ||| ||||||||||||||||||||||| |||||||| ||| | |||||||| |||| Sbjct 721 AGGGTCATCTCAAGCTGTTGGAAGCTGCTCTGAGTGTTAGTGA--A-GGAGGGTACCCAT 777 Query 783 GTTTTGAAATATCTGCACTGAATGCAGACAAACCATCGCTTACAGTTACAGAGATTAAAG 842 ||||||||||||| ||| | ||||||||||||||||| ||||||||| |||| ||||||| Sbjct 778 GTTTTGAAATATCCGCAGTAAATGCAGACAAACCATCCCTTACAGTTGCAGAAATTAAAG 837 Query 843 ATCGTGTCAAACAATTTGAAGTACTTGAAAAGACGGTAATAGTTTCAAATCAGCCTTTCT 902 |||| ||||| |||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 838 ATCGCGTCAAGCAATTTGAAGTACTTGAAAAGACGGTAATAGTTTCAAATCAGCCATTCT 897 Query 903 TCTACAAGAAAGCTGAACTCTTCCCAGGAAGCAGTTTTGTAATTGGTGCTGATACTGCAG 962 | ||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||| Sbjct 898 TTTACAAGAAAGCTGAACTCTTCCCAGGAAGCAGTTTTGTAATCGGTGCTGACACTGCAG 957 Query 963 CAAGGATTGTTAATCCAAAGTACTATGAAGGAAGCCACAAAAGGATGTTGGAGGTACTAG 1022 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 958 CAAGGCTTGTTAATCCAAAGTACTATGAAGGAAGCCACAAAAGGATGTTGGAGGTACTAG 1017 Query 1023 GTGATTGCAAACGAACAGGTTGCAAGTTCCTTGTTGGTGGCCGTAATGTAGATAGTGTAT 1082 |||| |||||||||||||||||||||||||||||||||||||||||||||||| ||| || Sbjct 1018 GTGACTGCAAACGAACAGGTTGCAAGTTCCTTGTTGGTGGCCGTAATGTAGATGGTGAAT 1077 Query 1083 TCAAGGTTCTTGACGATCAT-GAGATTCCAAAGGAAATAAGTACAATGTTTACCTCAATT 1141 | |||||||| |||||| || || |||||| | |||||||| | ||||||||||||||| Sbjct 1078 TTAAGGTTCTCGACGAT-ATTGACATTCCAGATGAAATAAGCAGTATGTTTACCTCAATT 1136 Query 1142 TCAGCAGATACATTCCGTATGGATATATCCTCTACAGAGCTAAGAAAGAACCAAGGAGGT 1201 |||| || |||||||| ||||||||||||||||| |||||||||||||||| ||||| | Sbjct 1137 CCAGCGGAAACATTCCGAATGGATATATCCTCTACTGAGCTAAGAAAGAACCGAGGAGAT 1196 Query 1202 GTTATTTCATAATGCAG-AA---G---CTTGGAAAAAGAATATTGGCTTTT 1245 ||||||||||||||||| || | |||| ||||||||||||||||||| Sbjct 1197 GTTATTTCATAATGCAGGAACTAGTGACTTGCAAAAAGAATATTGGCTTTT 1247 > Ahg484032 jgi|Araly1|484032|fgenesh2_kg.5__24__AT2G01220.2 Length=1414 Score = 1258 bits (681), Expect = 0.0 Identities = 1021/1185 (86%), Gaps = 24/1185 (2%) Strand=Plus/Plus Query 30 CGAGAGAAACAATGGCG-GAGTCTGCGATCCGAACCATCGTCGAATCAATTCACTCATCG 88 ||||||||||||||| | ||| |||||||||| |||||||||||| | ||||||||||| Sbjct 1 CGAGAGAAACAATGG-GAGAGGCTGCGATCCGTACCATCGTCGAAGCCATTCACTCATCT 59 Query 89 CCGACGCAAGCCGTCGTGTATCTCTCCGGCGGTGCCTCTCAGTCTTTAGGTTGGTTAATG 148 |||||||| |||||||| || || |||||||||||||||| | ||||||||||||| ||| Sbjct 60 CCGACGCAGGCCGTCGTCTACCTTTCCGGCGGTGCCTCTCTGGCTTTAGGTTGGTTGATG 119 Query 149 TCAGTTCCTGGAGCTTCGAACACACTTCTCGAAGCCGTGGTTCCGTATTCCATGA-TCTC 207 || |||||||||||||| ||||| |||||||||||||||||||| ||||||| || | || Sbjct 120 TCGGTTCCTGGAGCTTCCAACACGCTTCTCGAAGCCGTGGTTCCTTATTCCA-GAGTTTC 178 Query 208 TATGGTTCAATTACTCGGCAGGGTTCCGAACCAACACTGTAGCCAATCAATGGCGAATGA 267 |||||| |||||||||||||||||||||| |||||||||||||||| ||||||| || || Sbjct 179 TATGGTCCAATTACTCGGCAGGGTTCCGAGCCAACACTGTAGCCAAGCAATGGCCAAGGA 238 Query 268 AATGGCTTTGTTAGCTTATAATCGTGCTCTTAAGCTTTCTAAGCCAGGATGTGCGGTTCT 327 ||||| |||||||| || ||||| || |||||||| ||||| ||||||| | ||||||| Sbjct 239 GATGGCCTTGTTAGCCTACAATCGGGCGCTTAAGCTCTCTAAACCAGGATATCCGGTTCT 298 Query 328 TGGTGTTGGTTTTACTGGAACGTTAGCAACTTCTCGTCCAAAGCGTGGGGATCATAGGTT 387 ||| | |||||||| ||| | || |||||||||||||| |||||||||||||| ||||| Sbjct 299 CGGTCTCGGTTTTACGGGATCATTGGCAACTTCTCGTCCTAAGCGTGGGGATCACAGGTT 358 Query 388 CTTTTTGTCGATAAGAGCTTCCAACCGGATATGGGAAACTTCAGTTACTCTAACAAAGGG 447 ||||||||| || ||||| ||||||||||| |||||| ||||||| |||||||| || | Sbjct 359 CTTTTTGTCTATGAGAGCATCCAACCGGATTTGGGAATCTTCAGTCACTCTAACTAA--G 416 Query 448 AA--AACGAAGCCGAGAGGAAGAAGATAAAGTGGCAAGCTCTGTACTGATTCAGGCTATG 505 || ||| |||||||| ||||||||||| ||| |||| | || |||||| ||||||||| Sbjct 417 AACTTACGCAGCCGAGAAGAAGAAGATAAGGTGTCAAGTTGTGCACTGATCCAGGCTATG 476 Query 506 GCTAAGGCATGCCAAGTTTCTGAGACACTTGACTCTGGCTTGACTGATTCTGAGGTG-CT 564 || || |||||||||||||||| ||||||||||||||||||||| || ||||||||| || Sbjct 477 GCCAAAGCATGCCAAGTTTCTGGGACACTTGACTCTGGCTTGACCGAGTCTGAGGTGCCT 536 Query 565 TAATGAGTCTGTAATCCAGTTTAGTGAAGAAGAAGAACTAGAACAGCTTATAGATGGACA 624 | ||||||||| || ||| |||| ||||||| |||||||||| ||||||||| |||| | Sbjct 537 T-ATGAGTCTGAAACCCACTTTACTGAAGAACAAGAACTAGAGCAGCTTATAAATGGGC- 594 Query 625 AATATG--CTCTAAGATCTATCCATTTTCTAAAGCAGAATCATACGGGTCGGATAAAGAT 682 | | || || |||||| |||||||||||| | ||| || | ||||| ||| ||||| Sbjct 595 ACT-TGACCTGTAAGATTTATCCATTTTCT---GGGGAAGCACATGGGTCTGATGAAGAT 650 Query 683 AGAAAGATTATACTGCCTGGTTCTTTTAACCCATTACATGACGGTGATCTCAAGCTGTTG 742 |||||||||||||| ||||| |||||||||||||||||||| ||| |||||||||| || Sbjct 651 AGAAAGATTATACTTCCTGGCTCTTTTAACCCATTACATGAAGGTCATCTCAAGCTATTA 710 Query 743 GAAGCTGCTATGAGTGTTTCTGAGGAAGGAGGGTATCCATGTTTTGAAATATCTGCACTG 802 |||| |||| |||| |||| || || || ||||| ||||||||||||||||| ||| | Sbjct 711 GAAGTTGCTCTGAGGGTTTGTG-GG--GGCGGGTACCCATGTTTTGAAATATCCGCAATA 767 Query 803 AATGCAGACAAACCATCGCTTACAGTTACAGAGATTAAAGATCGTGTCAAACAATTTGAA 862 ||||| ||||||||| ||||| ||||| || ||||||||||||||||||| ||||||||| Sbjct 768 AATGCCGACAAACCACCGCTTTCAGTTGCACAGATTAAAGATCGTGTCAAGCAATTTGAA 827 Query 863 GTACTTGAAAAGACGGTAATAGTTTCAAATCAGCCTTTCTTCTACAAGAAAGCTGAACTC 922 | | ||| |||||| | ||||||||||||||||| | |||||||||||||||||||||| Sbjct 828 GCAGTTGGAAAGACAATTATAGTTTCAAATCAGCCATACTTCTACAAGAAAGCTGAACTC 887 Query 923 TTCCCAGGAAGCAGTTTTGTAATTGGTGCTGATACTGCAGCAAGGATTGTTAATCCAAAG 982 |||||||||||||||||||||||||| ||||| |||||||| ||| |||| ||| |||| Sbjct 888 TTCCCAGGAAGCAGTTTTGTAATTGGCGCTGACACTGCAGCGAGGCTTGTCGATCTAAAG 947 Query 983 TACTATGAAGGAAGCCACAAAAGGATGTTGGAGGTACTAGGTGATTGCAAACGAACAGGT 1042 ||||||||||||||| ||||||||||||||||| |||| |||||||||||||| |||||| Sbjct 948 TACTATGAAGGAAGCTACAAAAGGATGTTGGAGATACTTGGTGATTGCAAACGGACAGGT 1007 Query 1043 TGCAAGTTCCTTGTTGGTGGCCGTAATGTAGATAGTGTATTCAAGGTTCTTGACGATCAT 1102 |||| ||||||||||||||||| ||||||||| ||||||| ||||||||||| |||| | Sbjct 1008 TGCACTTTCCTTGTTGGTGGCCGCAATGTAGATGGTGTATTTAAGGTTCTTGAAGATCTT 1067 Query 1103 GAGATTCCAAAGGAAATAA--GTACAATGTTTACCTCAATTTCAGCAGATACATTCCGTA 1160 || ||||| ||||||| | | ||| |||||| ||||||| ||||||||| |||| | | Sbjct 1068 GATATTCCGGAGGAAATCATCG-ACA-TGTTTATCTCAATTCCAGCAGATAAATTCAGGA 1125 Query 1161 TGGATATATCCTCTACAGAGCTAAGAAAGAACCAAGGAGGTGTTA 1205 |||||||||||||||||||| ||||||| |||||||| ||| ||| Sbjct 1126 TGGATATATCCTCTACAGAGATAAGAAAAAACCAAGGGGGTATTA 1170 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 52983530795 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5