BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G27620.1
Length=1341
Score E
Sequences producing significant alignments: (Bits) Value
Ahg347138 jgi|Araly1|347138|fgenesh1_pg.C_scaffold_5000530 1421 0.0
Ahg342380 jgi|Araly1|342380|fgenesh1_pg.C_scaffold_3002143 1134 0.0
Ahg479749 jgi|Araly1|479749|fgenesh2_kg.3__2450__AT3G22370.1 767 0.0
> Ahg347138 jgi|Araly1|347138|fgenesh1_pg.C_scaffold_5000530
Length=993
Score = 1421 bits (769), Expect = 0.0
Identities = 924/998 (93%), Gaps = 13/998 (1%)
Strand=Plus/Plus
Query 108 ATGATCACTACATTACTCCGTCGCTCTCTCCTTGACGCATCAAAGCAAGCGACATCCATT 167
||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||
Sbjct 1 ATGATCACTACATTACTCCGTCGATCTCTCCTTGACGCATCAAAGCCGGCGACATCCATT 60
Query 168 AATG-GAATTCTATTTCACCAACTTGCTCCAGC-GAAATATTTTAGGGTTCCGGCAG-TG 224
|||| | |||||||||||||||||||| ||||| |||| ||||||||| |||||| | ||
Sbjct 61 AATGCG-ATTCTATTTCACCAACTTGCCCCAGCGGAAA-ATTTTAGGGCTCCGGC-GATG 117
Query 225 GGAGGTC-TGAGAGATTTCAGCAAGATGACATTTGAAAAGAAGAAAACATCGGAAGAAGA 283
||||| | ||||||||||||||||||||| |||||||||||||||||| | ||| || ||
Sbjct 118 GGAGG-CTTGAGAGATTTCAGCAAGATGATATTTGAAAAGAAGAAAACGTTGGAGGAGGA 176
Query 284 GGAAGGATCCGGTGACGGCGTCAAGGTTAATGATCAA-G--GTAACAAAGGGGAACAATT 340
| || |||| ||||| |||| |||| |||||||||| | |||||||| ||||||||||
Sbjct 177 GAAAAGATCTGGTGATGGCGAGAAGGCTAATGATCAAGGTAGTAACAAATGGGAACAATT 236
Query 341 AATAGTTAGTTATTGGGGCGTGAAGCCAATGAAAATCACCAAAGAAGATGGAACTGAATG 400
||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 237 AATCGTTAGTTATTGGGGCGTGAAGCCGATGAAAATCACCAAAGAAGATGGAACTGAATG 296
Query 401 GAAATGGAGTTGCTTTCGGCCATGGGAGACTTATAAAGCTGATCTAACGATAGATTTGAA 460
|||||||| ||| ||||||||||||||||| |||||||||||| | ||||||||||||||
Sbjct 297 GAAATGGACTTGTTTTCGGCCATGGGAGACGTATAAAGCTGATTTGACGATAGATTTGAA 356
Query 461 GAAGCATCATGTTCCTTCAACTTTACCGGACAAAATAGCTTATTGGATGGTTAAATCTCT 520
|||||| ||||||||||| ||||||||||||||| |||||||||||||||||||||||||
Sbjct 357 GAAGCACCATGTTCCTTCCACTTTACCGGACAAATTAGCTTATTGGATGGTTAAATCTCT 416
Query 521 TCGATGGCCTACCGATCTTTTCTTCCAGAGGAGGTATGGTTGCCGAGCGATTATGCTAGA 580
|||||||||||||||||| |||||||||||| ||||||| ||||||||||| ||| ||||
Sbjct 417 TCGATGGCCTACCGATCTCTTCTTCCAGAGGCGGTATGGATGCCGAGCGATGATGTTAGA 476
Query 581 GACGGTTGCAGCGGTTCCAGGAATGGTTGGAGGGATGCTTATGCACTTCAAATCTC-TCA 639
|||||||||||||| |||||||||||||||||||||||||||||||||||||| | ||
Sbjct 477 AACGGTTGCAGCGGTGCCAGGAATGGTTGGAGGGATGCTTATGCACTTCAAATCGCTTC- 535
Query 640 GGCGTTTCGAACAAAGTGGGGGTTGGATCAAAGCCCTTCTCGAAGAAGCAGAGAATGAGA 699
|||||||||||||||||||||||||||| ||||||||||| || ||||||||||||||||
Sbjct 536 GGCGTTTCGAACAAAGTGGGGGTTGGATTAAAGCCCTTCTTGAGGAAGCAGAGAATGAGA 595
Query 700 GAATGCACTTAATGACATTCATGGAAGTAGCGAAACCCAAATGGTACGAACGAGCTCTTG 759
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 596 GAATGCACTTAATGACATTCATGGAAGTCGCGAAACCCAAATGGTACGAACGAGCTCTTG 655
Query 760 TGATCTCTGTTCAAGGGGTTTTCTTCAACGCTTATTTAATCGGATACATAATCTCTCCCA 819
||||| | |||||||| ||||||||||||||||||||| |||||||| ||||||| ||||
Sbjct 656 TGATCGCCGTTCAAGGCGTTTTCTTCAACGCTTATTTACTCGGATACTTAATCTCCCCCA 715
Query 820 AGTTTGCTCATCGTATGGTTGGATACCTTGAGGAAGAAGCAATACATTCTTACACTGAGT 879
| ||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 716 AATTTGCTCATCGTATGGTTGGATACCTTGAGGAAGAAGCAATACATTCTTACACCGAAT 775
Query 880 TTCTCAAAGAACTCGATAACGGTAACATCGAAAATGTTCCTGCACCGGCTATCGCTGTTG 939
||||||||||||| ||||| |||||||| ||||| ||||||||||||||||| ||| |||
Sbjct 776 TTCTCAAAGAACTTGATAATGGTAACATTGAAAACGTTCCTGCACCGGCTATTGCTATTG 835
Query 940 ATTACTGGAGGCTTGAAGCTGATGCAACGCTTCGTGATGTTGTCATGGTGGTTCGTGCTG 999
|||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||
Sbjct 836 ATTACTGGAGGCTTGAAGCTGACGCAACGCTTCGTGATGTCGTCATGGTGGTTCGTGCTG 895
Query 1000 ATGAGGCGCATCACCGTGACGTTAACCACTATGCATCCGATATTCACTACCAAGGTCATG 1059
||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 896 ATGAGGCCCATCACCGTGATGTTAACCACTATGCATCCGATATTCACTACCAAGGTCATG 955
Query 1060 AGCTGAAAGAAGCTCCAGCTCCTATAGGATATCACTGA 1097
|||||||||||||||||||||| ||||||||||| |||
Sbjct 956 AGCTGAAAGAAGCTCCAGCTCCCATAGGATATCATTGA 993
> Ahg342380 jgi|Araly1|342380|fgenesh1_pg.C_scaffold_3002143
Length=975
Score = 1134 bits (614), Expect = 0.0
Identities = 811/904 (90%), Gaps = 22/904 (2%)
Strand=Plus/Plus
Query 200 GAAATATTTTAGGGTTCCGGCA-G-TGGGAGGTC-TGAGAGATTTCAGCAAGATGACATT 256
|||| || |||||||||| | | | ||||| ||| |||||||||||||||||||||||||
Sbjct 88 GAAA-ATGTTAGGGTTCC-G-ATGATGGGA-GTCGTGAGAGATTTCAGCAAGATGACATT 143
Query 257 TGAAAAGAAGAAAAC-ATCGGAAGAAGAGGAAGGATCCGGTGACGGCGTCAAGGTTAATG 315
||| ||||||||||| | ||| || ||| ||| || | | |||| | ||||| ||
Sbjct 144 TGAGAAGAAGAAAACGA-CGG-AG--GAGAAAGAAT-C--TAACGGTGGCAAGG---CTG 193
Query 316 ATCAAGGTAACAAAGGGGAACAATTAATAGTTAGTTATTGGGGCGTGAAGCCAATGAAAA 375
||||||||||||||||||| |||||||| |||||||||||||| |||||||| ||||| |
Sbjct 194 ATCAAGGTAACAAAGGGGAGCAATTAATCGTTAGTTATTGGGGTGTGAAGCCGATGAAGA 253
Query 376 TCACCAAAGAAGATGGAACTGAATGGAAATGGAGTTGCTTTCGGCCATGGGAGACTTATA 435
|||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||
Sbjct 254 TCACCAAAGAAGATGGCACTGAATGGAAATGGAGTTGCTTCCGGCCATGGGAGACTTATA 313
Query 436 AAGCTGATCTAACGATAGATTTGAAGAAGCATCATGTTCCTTCAACTTTACCGGACAAAA 495
|| | ||| | ||||||||||||||||||||||||||||| || || ||| ||||||||
Sbjct 314 AATCAGATTTGACGATAGATTTGAAGAAGCATCATGTTCCATCGACATTATCGGACAAAT 373
Query 496 TAGCTTATTGGATGGTTAAATCTCTTCGATGGCCTACCGATCTTTTCTTCCAGAGGAGGT 555
|||||||||||| ||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct 374 TAGCTTATTGGACCGTTAAATCTCTTCGATGGCCTACCGATGTTTTCTTCCAGAGGCGGT 433
Query 556 ATGGTTGCCGAGCGATTATGCTAGAGACGGTTGCAGCGGTTCCAGGAATGGTTGGAGGGA 615
| || ||| |||| || |||||||| ||||||||||||||||||||||||||||||||||
Sbjct 434 ACGGATGCAGAGCAATGATGCTAGAAACGGTTGCAGCGGTTCCAGGAATGGTTGGAGGGA 493
Query 616 TGCTTA-TGCACTTCAAATCTCTCAGGCGTTTCGAACAAAGTGGGGGTTGGATCAAAGCC 674
|| ||| | |||| |||||| || |||||||| |||||||| || |||||||||||||||
Sbjct 494 TG-TTAGTCCACTGCAAATCGCTTAGGCGTTTTGAACAAAGCGGTGGTTGGATCAAAGCC 552
Query 675 CTTCTCGAAGAAGCAGAGAATGAGAGAATGCACTTAATGACATTCATGGAAGTAGCGAAA 734
|| || |||||||||||||| ||||||||||| |||||||||||||||||||| ||||||
Sbjct 553 CTACTTGAAGAAGCAGAGAACGAGAGAATGCATTTAATGACATTCATGGAAGTCGCGAAA 612
Query 735 CCCAAATGGTACGAACGAGCTCTTGTGATCT-CTGTTCAAGGGGTTTTCTTCAACGCTTA 793
||||| ||||||||||||||||||||||| | | |||||||| ||||| |||||||||||
Sbjct 613 CCCAATTGGTACGAACGAGCTCTTGTGAT-TGCCGTTCAAGGCGTTTTTTTCAACGCTTA 671
Query 794 TTTAATCGGATACATAATCTCTCCCAAGTTTGCTCATCGTATGGTTGGATACCTTGAGGA 853
||| |||||||| ||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 672 TTTCCTCGGATACCTAATCTCTCCCAAATTTGCTCATCGTATGGTTGGATACCTTGAGGA 731
Query 854 AGAAGCAATACATTCTTACACTGAGTTTCTCAAAGAACTCGATAACGGTAACATCGAAAA 913
||||||||| || ||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 732 AGAAGCAATCCACTCTTACACTGAGTTTCTTAAAGAACTCGATAACGGTAACATCGAAAA 791
Query 914 TGTTCCTGCACCGGCTATCGCTGTTGATTACTGGAGGCTTGAAGCTGATGCAACGCTTCG 973
||||||||||||||||| || |||||||||||||||||||||| ||||| ||||||||
Sbjct 792 CGTTCCTGCACCGGCTATTGCCATTGATTACTGGAGGCTTGAAGCAGATGCGACGCTTCG 851
Query 974 TGATGTTGTCATGGTGGTTCGTGCTGATGAGGCGCATCACCGTGACGTTAACCACTATGC 1033
|||||| ||||||||||| ||||||||||| ||||||||||||||||||||||| |||||
Sbjct 852 TGATGTCGTCATGGTGGTCCGTGCTGATGAAGCGCATCACCGTGACGTTAACCATTATGC 911
Query 1034 ATCCGATATTCACTACCAAGGTCATGAGCTGAAAGAAGCTCCAGCTCCTATAGGATATCA 1093
||||||||||||||||||||||| |||||||||||||||||||||||| || ||||||||
Sbjct 912 ATCCGATATTCACTACCAAGGTCGTGAGCTGAAAGAAGCTCCAGCTCCCATCGGATATCA 971
Query 1094 CTGA 1097
|||
Sbjct 972 TTGA 975
> Ahg479749 jgi|Araly1|479749|fgenesh2_kg.3__2450__AT3G22370.1
Length=1274
Score = 767 bits (415), Expect = 0.0
Identities = 650/762 (85%), Gaps = 22/762 (3%)
Strand=Plus/Plus
Query 347 TAGTTATTGGGGCG-TGAAGCC-AATGAAAATCACCAAAGAAGATGGAACTGAATGGAAA 404
||| |||||||| | |||| || ||| || || || ||||||||||| ||||||||||
Sbjct 366 TAGCTATTGGGGTGTTGAA-CCTAAT-AAGATTACTAAAGAAGATGGTTCTGAATGGAAG 423
Query 405 TGGAGTTGCTTTC-GGCCATGGGAGACTTATAAAGCTGATCTAACGATAGATTTGAAGAA 463
|||| ||| |||| |||||||||||||||||||||||||| | || |||||| |||||||
Sbjct 424 TGGAATTG-TTTCAGGCCATGGGAGACTTATAAAGCTGATTTGACTATAGATCTGAAGAA 482
Query 464 GCATCATGTTCCTTCAAC-TTTACCGGACAAAATAGCTTATTGGA-TGGTTAAATCTCTT 521
|||||||||||| | || ||| | || | | |||||||||||| | ||||||||||||
Sbjct 483 ACATCATGTTCCTACGACGTTT-CTTGATAGATTAGCTTATTGGACT-GTTAAATCTCTT 540
Query 522 CGATGGCCTACCGATCTT-TTCTTCCAGAGGAGGTATGGTTGCCGAGCGATTATGCTAGA 580
|| |||||||| ||| || |||||||||||||| |||||||| ||||| || ||||| ||
Sbjct 541 CGTTGGCCTACTGAT-TTGTTCTTCCAGAGGAGATATGGTTGTCGAGCTATGATGCTTGA 599
Query 581 GACGGTTGCAGCGGTTCCAGGAATGGTTGGAGGGATGCTTA-TGCACTTCAAATCTC-TC 638
||| || ||||| || || |||||||||||||| ||| ||| | |||| |||||| | ||
Sbjct 600 GACTGTAGCAGCAGTGCCTGGAATGGTTGGAGGAATG-TTACTACACTGCAAATCGCTTC 658
Query 639 AGGCGTTTCGAACAAAGTGGGGGTTGGATCAAAGCCCTTCTCGAAGAAGCAGAGAATGAG 698
| ||||| || |||||||| || ||||| ||||||||||| || |||||||||||||||
Sbjct 659 -GACGTTTTGAGCAAAGTGGAGGATGGATTAAAGCCCTTCTTGAGGAAGCAGAGAATGAG 717
Query 699 AGAATGCA-CTTAATGACATTCATGGAAGTAGCGAAACCCAAATGGTACGA-ACGAGCTC 756
|||||||| ||| ||||||||||||||||| |||||||| ||||||||||| | |||| |
Sbjct 718 AGAATGCATCTT-ATGACATTCATGGAAGTCGCGAAACCGAAATGGTACGAGA-GAGCGC 775
Query 757 TTGTGATCTCTGTTCAAGGGGTTTTCTTCAACGCTTATTTAATCGGATACATAATCTCTC 816
|||||||| |||| ||||| |||||||||||||| ||||| | || ||| |||||||||
Sbjct 776 TTGTGATCACTGTGCAAGGAGTTTTCTTCAACGCGTATTTCCTTGGTTACCTAATCTCTC 835
Query 817 CCAAGTTTGCTCATCGTATGGTTGGATACCTTGAGGAAGAAGCAATACATTCTTACACTG 876
|||||||||||||||||||||||||||| ||||| ||||||||||| |||||||||||||
Sbjct 836 CCAAGTTTGCTCATCGTATGGTTGGATATCTTGAAGAAGAAGCAATCCATTCTTACACTG 895
Query 877 AGTTTCTCAAAGAACTCGATAACGGTAACATCGAAAATGTTCCTGCACCGGCTATCGCTG 936
|||||||||| ||||| || || |||||||| || ||||||||||| ||||||||||||
Sbjct 896 AGTTTCTCAAGGAACTTGACAAAGGTAACATTGAGAATGTTCCTGCTCCGGCTATCGCTA 955
Query 937 TTGATTACTGGAGGCTTGAAGCTGATGCAACGCTTCGTGATGTTGTCATGGTGGTTCGTG 996
||||||||||||||||| ||||||||||| || ||||||||||| || || |||||||
Sbjct 956 TTGATTACTGGAGGCTTCCTGCTGATGCAACACTCCGTGATGTTGTGATTGTTGTTCGTG 1015
Query 997 CTGATGAGGCGCATCACCGTGACGTTAACCACTATGCATCCGATATTCACTACCAAGGTC 1056
|||| ||||| ||||||||||| || ||||| | |||||| |||||||| ||||||||||
Sbjct 1016 CTGACGAGGCTCATCACCGTGATGTCAACCATTTTGCATCTGATATTCATTACCAAGGTC 1075
Query 1057 ATGAGCTGAAAG-AAGCTCCAGCTCCTATAGGATATCACTGA 1097
||| || |||| ||||||||||||| || || ||||| |||
Sbjct 1076 GTGAACT-AAAGGAAGCTCCAGCTCCAATTGGGTATCATTGA 1116
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50169758772
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5