BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G27640.1
Length=1821
Score E
Sequences producing significant alignments: (Bits) Value
Ahg936528 jgi|Araly1|936528|scaffold_500719.1 2368 0.0
Ahg925257 jgi|Araly1|925257|scaffold_200818.1 231 1e-59
> Ahg936528 jgi|Araly1|936528|scaffold_500719.1
Length=1657
Score = 2368 bits (1282), Expect = 0.0
Identities = 1548/1669 (93%), Gaps = 47/1669 (3%)
Strand=Plus/Plus
Query 40 AATTAATTTTCCCGCGTCAAATGAGAGACCACACCGCCCAAAAAATCCAGTATCCCGCCG 99
|||||||||||||||||||||||||| |||||||||||| ||||||||||||| ||
Sbjct 1 AATTAATTTTCCCGCGTCAAATGAGAAACCACACCGCCC-AAAAATCCAGTAT----CC- 54
Query 100 GATTCAGAGACTCTCCGATGGAATCCTCCAGATCTAGATCCGTCTTCGTCAACATCGGAC 159
| ||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 55 ----C--AGACTCTCCGATGGAATCCTCCAGATCTAGATCCGTCTTCGCCAACATCGGAC 108
Query 160 TCAGAGAACTCAACGGATTTCGAGTACGGAAGAGACCGTTCTTCGCAGACTCCGAGCTGA 219
||||||| |||||||||||||||||||||||| |||||||||||||||| |||||||| |
Sbjct 109 TCAGAGAGCTCAACGGATTTCGAGTACGGAAGCGACCGTTCTTCGCAGATTCCGAGCTCA 168
Query 220 TTTGCAGAGAAATCGCCGGCGTAGCCGTGGAACACGACGGGATTTGGACTCCGCCGTTGG 279
|||||||||||||||||||||| || |||||||||||||||||| | || ||||||||||
Sbjct 169 TTTGCAGAGAAATCGCCGGCGTGGCGGTGGAACACGACGGGATTCGAACCCCGCCGTTGG 228
Query 280 CTGTTTCGTTTTGTAAGACTAGCAGGAATTCGCAATTGTTCGCCGTCTCTGATGAAGACG 339
| ||||| ||||||||||||||| ||||||| ||||| ||||| || |||||||||||||
Sbjct 229 CCGTTTCCTTTTGTAAGACTAGCCGGAATTCTCAATTATTCGCGGTATCTGATGAAGACG 288
Query 340 GCCATGTGAGCTTGTTTAATTCTTCCAGTAAGAAGTTTGCTTCTTCTGCAACTCACCAAG 399
||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||
Sbjct 289 GCCATGTGAGCTTGTTTAA---TTCCAGTAAGAAGTTTGCCTCTTCTGCAACTCACCAAG 345
Query 400 AGAATACAGAGAAAGCTAGATTTCGTGACTGGATTGCTCATTATAATGCTATCTTTGACA 459
|||||||| |||| |||||||||||||| ||||||||||||||||| || || || ||||
Sbjct 346 AGAATACAAAGAATGCTAGATTTCGTGATTGGATTGCTCATTATAACGCGATATTCGACA 405
Query 460 TTTCTTGGATCAAGGGAGATAGTTGTCTTCTGACTGCTTCTGGTGATCAAACTATTAAAG 519
|||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 406 TTTCTTGGATCAAGAGAGATAGTTGTCTTCTAACTGCTTCTGGTGATCAAACTATTAAAG 465
Query 520 TATGGGATGTAGAGGAGAATAAGTGTACTGGAGTTCTTATTGGACATACAGGAACTGTAA 579
| |||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||
Sbjct 466 TGTGGGATGTAGAGGAGAATAAGTGTACTGGAGTTCTTATAGGACACACAGGAACTGTAA 525
Query 580 AATCTATGTGTTCACATCCAACGAATTCTGATCTTCTTGTATCTGGTTCAAGAGATGGAT 639
|||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 526 AATCAATGTGTTCACATCCAACGAATTCTGATCTTCTTGTATCTGGTTCGAGAGATGGAT 585
Query 640 GTTTTGCGTTGTGGGATTTAAGATGTAAAAGTAGCTCTCATAAAGAGGAATTTTGTATCA 699
||||||| |||||||| ||||||||||||||||||||||| |||||||||||||||||||
Sbjct 586 GTTTTGCTTTGTGGGACTTAAGATGTAAAAGTAGCTCTCACAAAGAGGAATTTTGTATCA 645
Query 700 ACTCTACTGGCATGGTTAAAGGAGCTCATCTATCTCCACTTTCAAAACGAATCAGACGTC 759
|||| ||||||||||||||||||||||||||||| || ||||||||||||||||||||||
Sbjct 646 ACTCCACTGGCATGGTTAAAGGAGCTCATCTATCCCCTCTTTCAAAACGAATCAGACGTC 705
Query 760 GCAAGGCTGCTTCGTCAAGCATTACCTCTGTGCTTTATGTCAAGGACGAGATCACAATTG 819
||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 706 GCAAGGCTGCTTCATCAAGCATTACCTCTGTGCTTTATCTCAAGGACGAGATCACAATTG 765
Query 820 CTACTGCTGGAGCACCTGATAGTGCCTTGAAATTTTGGGATATAAGAAAGCTGAAAGCTC 879
||||||||||||| || ||||||||||||||||||||||||| ||| |||||||||||||
Sbjct 766 CTACTGCTGGAGCTCCAGATAGTGCCTTGAAATTTTGGGATACAAGGAAGCTGAAAGCTC 825
Query 880 CTTTTGCTCAAGCCTCTCCACAATCAGACCCAACAAATACTAAGGAAAAGAGATCACATG 939
||||||||||||| ||||| || |||||||||||||| || |||||||||||||||||||
Sbjct 826 CTTTTGCTCAAGCTTCTCCCCAGTCAGACCCAACAAACACAAAGGAAAAGAGATCACATG 885
Query 940 GTATAGTTTCCTTGTCCCAGGACTCAAGTGGAACCTATCTCACAGCATCATGCAAGGACA 999
||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 886 GTATAGTATCCTTGTCCCAGGACTCAAGTGGAACCTTTCTCACAGCATCATGCAAGGACA 945
Query 1000 ATAGAATCTATCTATACAACACGCTGCGGCTTGACAAAGGACCTGTACAATCTTTCTCTG 1059
|||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||
Sbjct 946 ATAGAATCTATCTATACAACACCCTGCGGCTTGACAAAGGACATGTACAATCTTTCTCTA 1005
Query 1060 GCTGCCGGATAGATTCTTTCTTCGTAAGGACGATGATTAGTCCTGATGGTGAATATGTTT 1119
||||||| ||||||||||| ||||||||||| |||||||||||||||||||||||||| |
Sbjct 1006 GCTGCCGAATAGATTCTTTTTTCGTAAGGACAATGATTAGTCCTGATGGTGAATATGTCT 1065
Query 1120 TGAGCGGTTCAAGCGATGGAAACGCTTACATATGGCAGGTCAATAAACCTCAAGTAGATC 1179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1066 TGAGCGGTTCAAGCGATGGAAACGCTTACATATGGCAGGTCAATAAACCTCAAGTAGATC 1125
Query 1180 CTATAATCTTGAAAGGCCATGACTTTGAAGTTACTGCAGTAGATTGGTCTCCATCAGAGA 1239
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1126 CTATAATCTTGAAAGGCCATGACTTTGAAGTTACTGCAGTAGATTGGTCTCCATCGGAGA 1185
Query 1240 TTGGGAAAGTTGCAACAGCTTCAGATGATTTCACGGTACGACTATGGAACATAGAGAACA 1299
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1186 TTGGGAAAGTTGCAACGGCTTCAGATGATTTCACGGTACGACTATGGAACATAGAGAACA 1245
Query 1300 ACATATGTACAAACGCAAACGCAACAGCGTCTGTGTCCAGAGTTAAACGCAGAGTAACCG 1359
|| || |||||| |||||||||||||||||||||| ||||| ||||||||||||||||
Sbjct 1246 ACCGCTGCACAAACACAAACGCAACAGCGTCTGTGTCTAGAGTCAAACGCAGAGTAACCG 1305
Query 1360 CATTGTCAAACACTGAAGCCAAAGAAAGACTTGAGATGAACAGAGAAACTGAGAGTCCCC 1419
|||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1306 CATTTTCAAACACTGAAGCCAAAGAAAGACTAGAGATGAACAGAGAAACTGAGAGTCCCC 1365
Query 1420 AAAAGCATTCATCATTATCATCAGATGATGATTATA--A-TAATGATCAGTCAATGCCTA 1476
|||||||||||||||||| | |||||||||||||| | |||||||||||||| |||||
Sbjct 1366 AAAAGCATTCATCATTAT--T-AGATGATGATTATATTAATAATGATCAGTCAACGCCTA 1422
Query 1477 TCATTAGAACTCCAGAGTCTCAGAAGAAGAA-A--A-catcatcatcatcatcattgtca 1532
|||||||||||||||||||||||||||| || | | |||||||||||||||||||||||
Sbjct 1423 TCATTAGAACTCCAGAGTCTCAGAAGAA-AACATCATCATCATCATCATCATCATTGTCA 1481
Query 1533 tcattatcatca---------------------GAAGAAGATATAATATGCGAGAGAACA 1571
|||||||||||| |||||||||||||||||||||||||||
Sbjct 1482 TCATTATCATCATTATCATCATTATCATCATCAGAAGAAGATATAATATGCGAGAGAACA 1541
Query 1572 CCAGAAACCACATTCAACAGTCCATCCTCTGTACTAAACCCTCCTTCCTCAGTCAAAAGG 1631
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1542 CCAGAAACCACATTCAACAGTCCTTCCTCTGTACTAAACCCTCCTTCCTCAGTCAAAAGG 1601
Query 1632 CGAACCATTAGAGATTATTTTCTCGTCACTCCCTAAACACTAATCTCTT 1680
||||||||||||||||||||||| |||||||||||||| ||||||||||
Sbjct 1602 CGAACCATTAGAGATTATTTTCTTGTCACTCCCTAAACTCTAATCTCTT 1650
> Ahg925257 jgi|Araly1|925257|scaffold_200818.1
Length=329
Score = 231 bits (125), Expect = 1e-59
Identities = 146/156 (94%), Gaps = 2/156 (1%)
Strand=Plus/Plus
Query 610 ATCTTCTTGTATCTGGTTCAAGAGATGGATGTTTTGCGTTGTGGGATTTAAGATGTAAAA 669
||||||||||||||||||| | |||||||||||||||||||| |||||||| ||||||||
Sbjct 88 ATCTTCTTGTATCTGGTTC-A-AGATGGATGTTTTGCGTTGTTGGATTTAATATGTAAAA 145
Query 670 GTAGCTCTCATAAAGAGGAATTTTGTATCAACTCTACTGGCATGGTTAAAGGAGCTCATC 729
|||||||||| ||||||||||||||||||||||||| ||| |||||||||||| ||||||
Sbjct 146 GTAGCTCTCACAAAGAGGAATTTTGTATCAACTCTATTGGGATGGTTAAAGGATCTCATC 205
Query 730 TATCTCCACTTTCAAAACGAATCAGACGTCGCAAGG 765
|||||| ||||||||||||||||||||||||||||
Sbjct 206 AATCTCCTCTTTCAAAACGAATCAGACGTCGCAAGG 241
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68371989775
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5