BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G27650.1
Length=930
Score E
Sequences producing significant alignments: (Bits) Value
Ahg484553 jgi|Araly1|484553|fgenesh2_kg.5__545__AT3G27650.1 891 0.0
> Ahg484553 jgi|Araly1|484553|fgenesh2_kg.5__545__AT3G27650.1
Length=710
Score = 891 bits (482), Expect = 0.0
Identities = 653/729 (90%), Gaps = 37/729 (5%)
Strand=Plus/Plus
Query 203 AAAGAAGATCAAACCTTCTCAAGAAGTTATCAAGGA-AGGACCTTTTCTTGTTGCGATCC 261
||| ||||||||||||| |||||||||||||||| | ||||||||||||||| | |||
Sbjct 5 AAACAAGATCAAACCTTTTCAAGAAGTTATCAAGTAGGGGACCTTTTCTTGTTAC--TCC 62
Query 262 ATTTAAAGGGGATAT--------ATATGTCGAACTACACAAACTCACCGTGTGCAGCATG 313
||||||||||||||| | ||||| ||||||||||||||||| |||||||||||
Sbjct 63 ATTTAAAGGGGATATACAAGAAAAAATGTCAAACTACACAAACTCACCCTGTGCAGCATG 122
Query 314 CAAATTCCTCCGGCGTAAATGCACGTCAGACTGCGTATTCGCACCCTATTTTCCGCCGGA 373
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 123 CAAATTCCTCCGGCGTAAATGCACGTCAGACTGCGTATTCGCACCCTATTTTCCGCCGGA 182
Query 374 GGAACCTACAAAGTTTGCGAACGTCCACCGGATATTCGGGGCAAGCAATGTGAGCAAGAT 433
||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 183 GGAACCTACAAAGTTTGCGAACGTCCACCGGATATTCGGGGCAAGTAATGTAAGCAAGAT 242
Query 434 CCTCCACGAAGTGGCTCCC-CATCAGCGGGAAGATGCGGTCAACTCGCTGGCTTACGAGG 492
||| |||||||| || ||| |||||||||||||| || || |||||||||||||||||||
Sbjct 243 CCTTCACGAAGTAGC-CCCGCATCAGCGGGAAGACGCTGTGAACTCGCTGGCTTACGAGG 301
Query 493 CGGAAGCACGACTTAAAGATCCAGTGTATGGCTGCGTTGGAGCGATCTCGGTGCTCCAAA 552
| || ||||||||||| ||||||||||||||||||||||| |||||||||||||||||||
Sbjct 302 CAGAGGCACGACTTAATGATCCAGTGTATGGCTGCGTTGGGGCGATCTCGGTGCTCCAAA 361
Query 553 GACAGGTCTTGAGGTTGCAAAGGGAACTCGAGGAGACAAATGCTGATCTCATGAGGTACG 612
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 362 GACAGGTCTTGAGGTTGCAAAGGGAACTAGAGGAGACAAATGCTGATCTCATGAGGTACG 421
Query 613 CTGGTTGTCTCGGTGGTGAAACGACGTCGGCTTATGGTGGTCGGAGGGGTTGACTGGTCA 672
|| ||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 422 CTAGTTGTCTTGGTAGTGAAACGACGTCGGCTTATGGTGGTCGGAGGGGTTGACTGGTCA 481
Query 673 ACG--AG-A-GTTGATTAGTCATCATCACTCTTTGAGAAAATTAGCGGCGGAGAAGTATA 728
||| || | |||||||||||||||||||||||||| | || ||||||||| ||||||||
Sbjct 482 ACGGGAGTACGTTGATTAGTCATCATCACTCTTTGACAGAACTAGCGGCGGTGAAGTATA 541
Query 729 AAGAGAGAGAGGATGGTTGATGTGATGGTAAGTGTTATTAGTCGTATGTATATATGTGTA 788
||||||||||||||||||||| ||| | || |||||||||||||||| ||
Sbjct 542 AAGAGAGAGAGGATGGTTGAT---ATG--A--TG------GTCGTATGTATATATGCCTA 588
Query 789 AATATGGGGACATGCATGCATGTATATTTATGTTTATTTTCATGTATATACTTATGCGTA 848
| || |||||||||| ||| || ||||||||| |||||||||||| |||||||||||
Sbjct 589 --T--GGAGACATGCATGTATGCATCTTTATGTTTGTTTTCATGTATACACTTATGCGTA 644
Query 849 TGTGTAATTTAACTTGTAAtttttttttCATGGGAGAGGTCAAGGAATATTTTTGATGAT 908
|||||||||||||||||| |||| ||| |||||||| | ||||| |||||||||||||||
Sbjct 645 TGTGTAATTTAACTTGTAGTTTTCTTT-CATGGGAG-G-TCAAGAAATATTTTTGATGAT 701
Query 909 GTTGAATAA 917
||| |||||
Sbjct 702 GTTTAATAA 710
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34501239885
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5