BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G27660.1
Length=874
Score E
Sequences producing significant alignments: (Bits) Value
Ahg484554 jgi|Araly1|484554|fgenesh2_kg.5__546__AT3G27660.1 963 0.0
> Ahg484554 jgi|Araly1|484554|fgenesh2_kg.5__546__AT3G27660.1
Length=697
Score = 963 bits (521), Expect = 0.0
Identities = 632/682 (93%), Gaps = 22/682 (3%)
Strand=Plus/Plus
Query 1 TTTATATGTACGTTCTCGTAGACTTATCTCTATATACCCCCTTTAATTTGTTTGCTCTTA 60
|||||||||| |||||| ||||||||||||| |||| |||| | ||||| ||||||||
Sbjct 1 TTTATATGTATGTTCTCTTAGACTTATCTCT-TATA-CCCC--T--TTTGTATGCTCTTA 54
Query 61 GCCTTTACT-TTATAGTTTTATATCATATCAATCGACATGGCGAATGTGGATCGTGATCG 119
|||||| || || |||||||| |||||||||||||||||||||||||| || ||||||||
Sbjct 55 GCCTTTGCTCTT-TAGTTTTAGATCATATCAATCGACATGGCGAATGTTGACCGTGATCG 113
Query 120 GCGTGTGCATGTAGACCGTACTGACAAACGTGTTCA---TCAGCCAAACTACGAAGATGA 176
|||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||
Sbjct 114 GCGTGTGCATGTAGACCGTACTGACAAACGTGTTCATCTTCAGCCATCCTACGAAGATGA 173
Query 177 TGTCGGTTTTGGTGGCTATGGCGGTTATGGTGCTGGTTCTGATTATAAGAGTCGCGGCCC 236
||| || ||| ||| | |||||||||||||||||||||| |||||||||||||||
Sbjct 174 TGTTGG-TTT--TGG---T---GGTTATGGTGCTGGTTCTGATTTTAAGAGTCGCGGCCC 224
Query 237 CTCCACTAACCAAATCTTGGCACTTATAGCAGGAGTTCCCATTGGTGGCACACTGCTAAC 296
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 225 CTCCACTAACCAAATCTTGGCACTTATAGCAGGAGTTCCCATTGGTGGCACACTGCTAAC 284
Query 297 CCTAGCTGGACTCACTCTAGCCGGTTCGGTGATCGGCTTGCTAGTCTCCATACCCCTCTT 356
|||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 285 TCTAGCTGGGCTCACTCTAGCCGGCTCGGTGATCGGCTTGCTAGTCTCCATACCCCTCTT 344
Query 357 CCTCCTCTTCAGTCCGGTGATAGTCCCGGCGGCTCTCACTATTGGGCTTGCTGTGACGGG 416
|||||||||||||||||| || ||||||||||||||||| || |||||||||||||||||
Sbjct 345 CCTCCTCTTCAGTCCGGTCATTGTCCCGGCGGCTCTCACAATCGGGCTTGCTGTGACGGG 404
Query 417 AATCTTGGCTTCTGGTTTGTTTGGGTTGACGGGTCTGAGCTCGGTCTCGTGGGTCCTCAA 476
||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||| ||
Sbjct 405 AATCTTGGCTTCTGGGTTGTTTGGGCTGACGGGTCTGAGCTCGGTCTCGTGGGTCCTTAA 464
Query 477 CTACCTCCGTGGGACGAGTGATACAGTGCCAGAGCAATTGGACTACGCTAAACGGCGTAT 536
||||||||||||||| ||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 465 CTACCTCCGTGGGACAAGTGATACAGTGCCAGAGCAATTGGACTATGCTAAGCGGCGTAT 524
Query 537 GGCTGATGCGGTAGGCTATGCTGGTATGAAGGGAAAAGAGATGGGTCAGTATGTGCAAGA 596
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 525 GGCTGATGCGGTAGGCTATGCTGGTATGAAGGGAAAAGAGATGGGCCAGTATGTGCAAGA 584
Query 597 TAAGGCTCATGAGGCTCGTGAGACTGAGTTCATGACTGAGACCCATGAGCCGGGTAAGGC 656
||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||
Sbjct 585 TAAGGCTCATGAGGCCCGTGAGACTGAGTTCACAACTGAGACCCATGAGCCGGGTAAGGC 644
Query 657 CAGGAGAGGCTCATAAGCTAAT 678
|||||| | |||||||||||||
Sbjct 645 CAGGAG-G-CTCATAAGCTAAT 664
Score = 62.1 bits (33), Expect = 7e-09
Identities = 33/33 (100%), Gaps = 0/33 (0%)
Strand=Plus/Plus
Query 718 TTTTACTTTTATGTCCCAGTTTCTTTCCTCTTT 750
|||||||||||||||||||||||||||||||||
Sbjct 665 TTTTACTTTTATGTCCCAGTTTCTTTCCTCTTT 697
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32366356533
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5