BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G27680.1

Length=405
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg936535 jgi|Araly1|936535|scaffold_500726.1                        472    1e-132


> Ahg936535 jgi|Araly1|936535|scaffold_500726.1
Length=445

 Score =  472 bits (255),  Expect = 1e-132
 Identities = 359/409 (88%), Gaps = 8/409 (2%)
 Strand=Plus/Plus

Query  1    ATGAAAATCCtttcagtttttctatttgtttttagtatttacatttttGGTCATGTATCC  60
            ||||||| ||||||||| ||||||||||||||||| ||||||||| |||| |||||||||
Sbjct  21   ATGAAAAACCTTTCAGTATTTCTATTTGTTTTTAGCATTTACATTCTTGGCCATGTATCC  80

Query  61   GGCACCGGAATTAGAATCGTGAACGAACTCAAATCTCATAAAAACT--TATGGATGAGGT  118
            ||||| ||||| | ||||  |||||||||| ||| ||| | |||||  | ||||||||||
Sbjct  81   GGCACTGGAATCACAATCACGAACGAACTCCAAT-TCA-AGAAACTCCTCTGGATGAGGT  138

Query  119  GTTATTCCAAAAATGATGTAATAGGTCCAAAAATAATACCAGTGGGATATG-ATTACGTG  177
            ||||||||||| |||| ||||||||||||||| || || || | ||| | | | || |  
Sbjct  139  GTTATTCCAAAGATGACGTAATAGGTCCAAAAGTACTATCAATCGGACA-GCAATATGAA  197

Query  178  AATAGTTTTCGCGCTAACATTTGGGGTACGACTCGTTTCATGTGTACTTTGAAACAAAGA  237
            |||  |||||| ||||||||||||||||||||||||||||||||||| ||||||||| ||
Sbjct  198  AATTCTTTTCGTGCTAACATTTGGGGTACGACTCGTTTCATGTGTACATTGAAACAAGGA  257

Query  238  CCAAACTATAGACATTATCAAAATTTTACCGCATTTAAACAATATACTGCTTATGATAAT  297
            || || |||| ||| |||||||||||||| |||||||| |||||||||| ||||||||||
Sbjct  258  CCTAATTATAAACACTATCAAAATTTTACAGCATTTAAGCAATATACTGGTTATGATAAT  317

Query  298  GGAGCTGATTGGGATTGGAGAGCGAGAGAAGATGGAATCTATTTAAAGAAAGAAGGTGGC  357
            ||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||| 
Sbjct  318  GGAGCCGATTGGGATTGGAGAGCCAGAGAAGATGGAATCTATTTAAAGAAAGAAGGTGGA  377

Query  358  TTAA-AAAAGTCGGTTGATATGAATAAAGTATATGATTGGATAAATTAA  405
             ||| |||| |||||||||||| ||||||||||||||||||||||||||
Sbjct  378  ATAAGAAAA-TCGGTTGATATGCATAAAGTATATGATTGGATAAATTAA  425



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 14537279409


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5