BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G27710.1
Length=1860
Score E
Sequences producing significant alignments: (Bits) Value
Ahg936538 jgi|Araly1|936538|scaffold_500729.1 2170 0.0
Ahg484560 jgi|Araly1|484560|fgenesh2_kg.5__552__AT3G27720.1 1303 0.0
> Ahg936538 jgi|Araly1|936538|scaffold_500729.1
Length=1625
Score = 2170 bits (1175), Expect = 0.0
Identities = 1416/1530 (93%), Gaps = 25/1530 (2%)
Strand=Plus/Plus
Query 161 GGAAGATGATAATTACAGCGAGGCAGAAGTCGATTTGCAACCCGTGACCTCGACAAAATC 220
||| ||||| ||||||| |||||||||||||||| |||||| ||||||||||||||||||
Sbjct 71 GGAGGATGAGAATTACAACGAGGCAGAAGTCGATGTGCAACACGTGACCTCGACAAAATC 130
Query 221 TACTAGCCAGGTGAT-A-AAAAAGGAATCTCTAGTAGCAGCACAAAAAGAAATTCTGGTT 278
||| ||||||||||| | ||||| ||||||||||||||||||||||||||| |||||||
Sbjct 131 TACGAGCCAGGTGATCACAAAAA--AATCTCTAGTAGCAGCACAAAAAGAAAGTCTGGTT 188
Query 279 AGGGTTATGGAATTGTTATCGGTTAAGGAGAACCAAGCTAGGACTCTTCTTATTTATTAC 338
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 189 AGGGTTATGGAATTGTTATCGGTTAAGGAGAACCAAGCTAGGACTCTTCTTATTTATTAC 248
Query 339 CAATGGAACGTTGAGAAGTTGTTCTCTGTGTTTGCTGATCAAGGCAAAGATCGTATGTTT 398
|||||||||||||| |||||||| ||||||| | ||||||||||||||||| |||||||
Sbjct 249 CAATGGAACGTTGATAAGTTGTTATCTGTGTATATTGATCAAGGCAAAGATCATATGTTT 308
Query 399 TCTTGTGCTGGTCTTACTGTTTTTGTTCCTTCTTTAGTTACTTCGAAGAAGACTATGAAA 458
||||||||||||||||||||||||| ||||||||||||||||| |||||||| |||||
Sbjct 309 TCTTGTGCTGGTCTTACTGTTTTTGACCCTTCTTTAGTTACTTCAAAGAAGACGATGAAC 368
Query 459 TGTGATGTCTGCATGGAAGATGATTTACCAAGTAATGTGATGACGAGAATGGAATGTGGT 518
||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||
Sbjct 369 TGTGATGTCTGCATGGAAGATGATTTACCAAGTGATGTGATGACGAGAATGGAGTGTGGT 428
Query 519 CATAGGTTTTGCAATGATTGTTGGATAGGG-CATTTTACTGTGAAGATTAATGAAGGTGA 577
||||| ||||||||||||||||||| ||| ||||||||||||| |||||||||||||||
Sbjct 429 CATAGCTTTTGCAATGATTGTTGGA-AGGAACATTTTACTGTGAGGATTAATGAAGGTGA 487
Query 578 AAGCAAGAGGATTCTATGTATGGCTCATGAATGCAAAGCGATTTGCGATGAAGATGTTGT 637
|||||| ||||||||||||||||||||| |||| ||||||||||||||||||||||||||
Sbjct 488 AAGCAAAAGGATTCTATGTATGGCTCATAAATGTAAAGCGATTTGCGATGAAGATGTTGT 547
Query 638 TAGGAAGCTAGTTAGTCCTGAATTAGCTGACAGGTATGATCGTTTCCTTATTGAATCTTA 697
|||||||||||||||||| ||||||||||| | |||||||||||||||||||||||||||
Sbjct 548 TAGGAAGCTAGTTAGTCCGGAATTAGCTGAGAAGTATGATCGTTTCCTTATTGAATCTTA 607
Query 698 TGTGGAAGATAACAATATGGTGAAGTGGTGTCCAAGTAAACCGCATTGCGGGAGTGCGAT 757
||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||
Sbjct 608 TGTGGAAGATAACAAGATGGTGAAGTGGTGTCCAAGTATACCGCATTGCGGGAGTGCGAT 667
Query 758 ACGGAAA-ATCGAAGATGGTCATGACGTCGTTGAGGTTGGATGTTCATGTGGACTTCAGT 816
||| ||| |||||||||| |||||||||||||||||| ||||||||||||||||||||
Sbjct 668 ACG-AAAGATCGAAGATG---ATGACGTCGTTGAGGTTGAATGTTCATGTGGACTTCAGT 723
Query 817 TCTGTTTCAGTTGTTTGAGTGAGTCTCACTCTCCTTGCTCTTGTTTGATGTGGAAGCTAT 876
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 724 TCTGTTTCAGTTGTTTGAGCGAGTCTCACTCTCCTTGCTCTTGTTTGATGTGGAAGCTAT 783
Query 877 GGAAAAAGAAGTGTGAAGACGAGTCTGAGACGGTTAATTGGATAACCGTTAACACAAAGC 936
||||||||||||||| |||||||||||||||||||||||||||||| ||||| || ||||
Sbjct 784 GGAAAAAGAAGTGTGTAGACGAGTCTGAGACGGTTAATTGGATAACGGTTAATACGAAGC 843
Query 937 TGTGTCCCAAATGT-AGCAAACCTATT-CAAAAGAGAGACGGTTGCAATCTCATGACTTG 994
|||||||||||||| | |||||||||| ||||| | ||| ||||||||||||||||||||
Sbjct 844 TGTGTCCCAAATGTTA-CAAACCTATTTCAAAACA-AGATGGTTGCAATCTCATGACTTG 901
Query 995 TAAGTGTGGGCAGCATTTTTGCTGGCTGTGTGGTCAAGCTACTGGAAG-A-GATCATACT 1052
||||||||||||||||||||| |||||||||||| |||||||||| | | | |||||||
Sbjct 902 TAAGTGTGGGCAGCATTTTTGTTGGCTGTGTGGTGAAGCTACTGGG-GCAAG-TCATACT 959
Query 1053 -TATACTAGTATTGCCGGTCATAGTTGTGGTCGGTACAAAGATGAAAAAGTGAGGCAATT 1111
| | |||||||| ||||||||||||||||||||||||||||| ||||| |||||| |
Sbjct 960 GTGCAG-AGTATTGCTGGTCATAGTTGTGGTCGGTACAAAGATGACAAAGTAAGGCAAAT 1018
Query 1112 GGAGAGAGCTCAAA-GGGATTTAGACAGGTATACACATTACCATTACCGCTACAAAGCAC 1170
||||||||| |||| ||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1019 GGAGAGAGC-CAAAAGGGATTTAGACAGGTATACGCATTACCATTACCGCTACAAAGCAC 1077
Query 1171 ATATCGATTCATTAAAGCTAGAGGATAAACTTAGGAAGAGTATCCTTGAGAAGGCAGTAT 1230
||| |||||| |||||||| |||||||||||||||||||||||||||||||||||||| |
Sbjct 1078 ATACCGATTCTTTAAAGCTCGAGGATAAACTTAGGAAGAGTATCCTTGAGAAGGCAGTGT 1137
Query 1231 CAAATTCTGAAACCAAGGATCAA-AAGGTGTTTAAAGAATACAGCTGGGTTACAGATGCA 1289
||||| ||||||||||||||||| ||| |||||||||||||||||||||||| |||||||
Sbjct 1138 CAAATGCTGAAACCAAGGATCAACAAG-TGTTTAAAGAATACAGCTGGGTTATAGATGCA 1196
Query 1290 GTCAACCGGTTATTCATATCGCGGCGGATTCTTTCGCAATCGTATCCTTTCGCGTTCTAT 1349
|||||| ||||||||| ||| | |||||||||| | || |||||||||||| ||||
Sbjct 1197 GTCAACAGGTTATTCAGATCAAGAAAGATTCTTTCGTATTCTTATCCTTTCGCGCTCTAC 1256
Query 1350 ATGTTCGGTGAAGAGCTGTTCaaagatgagatgagtgaaaaagagagagagataaagaag 1409
||||| ||||||||| |||| |||||||||||||| || ||||||||||||| ||||||
Sbjct 1257 ATGTTTGGTGAAGAGTTGTTTAAAGATGAGATGAGCGACGAAGAGAGAGAGATGAAGAAG 1316
Query 1410 aATCTGTTTGAAGATCAGCAGCAGCAACTTGAAGGTAATGTTGAGAAACTTTCCAAGATT 1469
||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 1317 AATCTGTTTGAAGATCAGCAGCAACAACTTGAAGGTAATGTTGAGAAACTTTCTAAGATT 1376
Query 1470 TTAGAAGAGCCTTTTGATGAGTATGATCATGAAAAAGTTGTGGAGATGATGAGACACCTC 1529
|||||||||||||||||||||||||||||||| ||||||||||| |||| ||||||||||
Sbjct 1377 TTAGAAGAGCCTTTTGATGAGTATGATCATGAGAAAGTTGTGGATATGAAGAGACACCTC 1436
Query 1530 ACCAATTTGACTGCTGTGGTTGATAACCTCTGCAAGGAAATGTATGAGTGCATTGAGAAT 1589
| |||||||| | || ||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1437 AACAATTTGAGTAATGCGGTTGATAACCTCTGCAAGAAAATGTATGAGTGCATTGAGAAT 1496
Query 1590 GAGTTATTAGGTCCAATACAATTTGGAAACCACAACATTGCACCTTACAGATCAAAGGGA 1649
|| ||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1497 GAATTACTAGGTCCAATACAATTTGGAATCCACAACATTGCACCTTACAGATCAAAGGGA 1556
Query 1650 ATAGAACAAGCAACTGAGTTTTGTGCTGAA 1679
||||||||||||||||||||||||||||||
Sbjct 1557 ATAGAACAAGCAACTGAGTTTTGTGCTGAA 1586
> Ahg484560 jgi|Araly1|484560|fgenesh2_kg.5__552__AT3G27720.1
Length=1545
Score = 1303 bits (705), Expect = 0.0
Identities = 959/1080 (89%), Gaps = 24/1080 (2%)
Strand=Plus/Plus
Query 645 CTAGTTAGTCCTGAATTAGCTGACAGGTATGATCGTTTCCTTATTGAATCTTATGTGGAA 704
|||||||| || || |||||||| | || |||||||||||| |||| || || || |||
Sbjct 478 CTAGTTAGCCCGGAGTTAGCTGAGAAGTTTGATCGTTTCCTCGTTGAGTCATACGTAGAA 537
Query 705 GATAACAATATGGTGAAGTGGTGTCCAAGTAAACCGCATTGCGGGAGTGCGATACGGAAA 764
||||||||||||||||||||||||||||| | ||| |||||||||| ||||||||| |||
Sbjct 538 GATAACAATATGGTGAAGTGGTGTCCAAGCACACCACATTGCGGGAATGCGATACGAAAA 597
Query 765 ATCGAAGATGGTCATGACG-TCGTTGAGGTTGG-ATGTTCATGTGGACTTCAGTTCTGTT 822
||| |||||| | | | || | | |||| ||| ||||||||||||||||||||||||||
Sbjct 598 ATCAAAGATGAT-A-G-CGAT-GACGAGG-TGGAATGTTCATGTGGACTTCAGTTCTGTT 652
Query 823 TCAGTTGTTTGAGTGAGTCTCACTCTCCTTGCTCTTGTTTGATGTGGAAGCTATGGAAAA 882
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 653 TCAGTTGTCTGAGTGAGTCTCACTCTCCTTGCTCTTGTTTGATGTGGAAGCTATGGAAAA 712
Query 883 AGAAGTGTGAAGACGAGTCTGAGACGGTTAATTGGATAACCGTTAACACAAAGCTGTGTC 942
||||||||| ||||||||||||||||||||||||||| ||||||||||| ||||||||||
Sbjct 713 AGAAGTGTGTAGACGAGTCTGAGACGGTTAATTGGATGACCGTTAACACGAAGCTGTGTC 772
Query 943 CCAAATGTAGCAAACCTATTCAAAAGAGAGACGGTTGCAATCTCATGACTTGTAAGTGTG 1002
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 773 CCAAATGTAGCAAACCTATTCAAAAGAGAGACGGTTGCAATCACATGACTTGTAAGTGTG 832
Query 1003 GGCAGCATTTTTGCTGGCTGTGTGGTCAAGCTACTGGAAG-AGATCATACTTATACTAGT 1061
| ||| ||||||||||||||||||||||||||||||| | ||| |||| || || |||
Sbjct 833 GTCAGTTTTTTTGCTGGCTGTGTGGTCAAGCTACTGGA-GCAGAACATAGTTTTAGGAGT 891
Query 1062 ATTGCCGGTCATAGTTGTGGTCGGTACAAAGATGAAAAAGTGAGGCAATTGGAGAGAGCT 1121
|| || |||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 892 ATCGCTGGTCATAGTTGTGGTCGGTACAAAGATGAAAAAGTGAGGCAAATGGAGAGAGC- 950
Query 1122 CAAA-GGGATTTAGACAGGTATACACATTACCATTACCGCTACAAAGCACATATCGATTC 1180
|||| |||||||||||||||| ||||||||||||||||| ||||||| || | ||||||
Sbjct 951 CAAAAGGGATTTAGACAGGTACACACATTACCATTACCGATACAAAGTGCACACCGATTC 1010
Query 1181 ATTAAAGCTAGAGGATAAACTTAGGAAGAGTATCCTTGA-GAAGGCAGTATCAAATTCTG 1239
|||||||||||||||||||||||||||||||||||| || ||||||| | | ||||||||
Sbjct 1011 ATTAAAGCTAGAGGATAAACTTAGGAAGAGTATCCT-GAAGAAGGCACTGTTAAATTCTG 1069
Query 1240 AAACCAAGGATCAA-AAGGTGTTTAAAGAATACAGCTGGGTTACAGATGCAGTCAACCGG 1298
|||||||||||||| ||| ||||||||||||||| ||||||||||||||||||||||||
Sbjct 1070 AAACCAAGGATCAAGAAGA-GTTTAAAGAATACAGTTGGGTTACAGATGCAGTCAACCGG 1128
Query 1299 TTATTCATATCGCGGCGGATTCTTTCGCAATCGTATCCTTTCGCGTTCTATATGTTCGGT 1358
||||||| ||| || |||||||||||| | |||||||||||||||||||| ||||| ||
Sbjct 1129 TTATTCAGATCACGACGGATTCTTTCGTATTCGTATCCTTTCGCGTTCTACATGTTTGGC 1188
Query 1359 GAAGAGCTGTTCaaagatgagatgagtgaaaaagagagagagataaagaagaATCTGTTT 1418
|||||| ||||||||||||||||||| || |||||||||| ||||||||||||||||||
Sbjct 1189 GAAGAGTTGTTCAAAGATGAGATGAGCGATGAAGAGAGAGATATAAAGAAGAATCTGTTT 1248
Query 1419 GAAGATCAGCAGCAGCAACTTGAAGGTAATGTTGAGAAACTTTCCAAGATTTTAGAAGAG 1478
|||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1249 GAAGATCAGCAGCAACAACTTGAAGGTAATATTGAGAAACTTTCCAAGATTTTAGAAGAG 1308
Query 1479 CCTTTTGATGAGTATGATCATGAAAAAGTTGTGGAG-ATGATGAGACACCTCACCAATTT 1537
|||||||||||||||| |||||| |||| | | |||| ||| || || | ||| |
Sbjct 1309 CCTTTTGATGAGTATGGTCATGAGGAAGTAATA-ATTATGAAGAGTCAACTAATCAAGAT 1367
Query 1538 GACTGCTGTGGTTGATA-ACCTCTGCAAGGAAATGTATGAGTGCATTGAGAATGAGTTAT 1596
| |||| ||||||||| || | |||||| ||||||||||||||||||| ||||| ||||
Sbjct 1368 GTGTGCTATGGTTGATACAC-TATGCAAGAAAATGTATGAGTGCATTGAAAATGACTTAT 1426
Query 1597 TAGGTCCAATAC-AATTTGGAAACCACAACATTGCACCTTACAGATCAAAGGGAATAGAA 1655
|||||||| | | ||| ||||| |||||||||||||||||||||||||| ||||||||||
Sbjct 1427 TAGGTCCACT-CGAATCTGGAATCCACAACATTGCACCTTACAGATCAATGGGAATAGAA 1485
Query 1656 CAAGCAACTGAGTTTTGTGCTGAATCTTCTGATTGTGGTTCAAGCGGATCTTCGTAGAAT 1715
||||| || | |||| |||| ||||| | |||| |||||||||||||||||| ||||
Sbjct 1486 CAAGCTGCTAAATTTTCTGCT---TCTTCGGCTTGTAGTTCAAGCGGATCTTCGTCGAAT 1542
Score = 241 bits (130), Expect = 2e-62
Identities = 171/191 (90%), Gaps = 1/191 (1%)
Strand=Plus/Plus
Query 257 AGCACAAAAAGAAATTCTGGTTAGGGTTATGGAATTGTTATCGGTTAAGGAGAACCAAGC 316
||| || || ||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct 127 AGC-CAGAAGGAAGTTATGGTTAGGGTTATGGAATTGTTATCGGTTAAGGAGAACCAAGC 185
Query 317 TAGGACTCTTCTTATTTATTACCAATGGAACGTTGAGAAGTTGTTCTCTGTGTTTGCTGA 376
||||||||||||||| |||| |||||||||||||| |||||||| ||||||| | |||
Sbjct 186 GAGGACTCTTCTTATTCATTATCAATGGAACGTTGATAAGTTGTTTTCTGTGTATATTGA 245
Query 377 TCAAGGCAAAGATCGTATGTTTTCTTGTGCTGGTCTTACTGTTTTTGTTCCTTCTTTAGT 436
|||||||||||||| | |||||||||||||||||||||||||||||| ||||| |||||
Sbjct 246 TCAAGGCAAAGATCTTTTGTTTTCTTGTGCTGGTCTTACTGTTTTTGACCCTTCCTTAGT 305
Query 437 TACTTCGAAGA 447
|| |||||||
Sbjct 306 TAAGTCGAAGA 316
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69857509330
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5