BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G27720.1
Length=1482
Score E
Sequences producing significant alignments: (Bits) Value
Ahg484560 jgi|Araly1|484560|fgenesh2_kg.5__552__AT3G27720.1 1580 0.0
Ahg936538 jgi|Araly1|936538|scaffold_500729.1 1371 0.0
> Ahg484560 jgi|Araly1|484560|fgenesh2_kg.5__552__AT3G27720.1
Length=1545
Score = 1580 bits (855), Expect = 0.0
Identities = 1331/1547 (86%), Gaps = 88/1547 (6%)
Strand=Plus/Plus
Query 1 ATGGATGACGAATATATGAGCCTCGAGGAGGAGG-A-A-GATAATTGTTACCCCTCTGAA 57
||||||||||||||||||||| |||||||||||| | | ||| |||||| | |||| | |
Sbjct 1 ATGGATGACGAATATATGAGCTTCGAGGAGGAGGAAGACGATTATTGTTGCTCCTCCG-A 59
Query 58 TTTGATGATCATGATCA-GATGTGTTCCAACGCGGAAGAGTCCGATTTGCAAC-ACTCGA 115
|||| || ||||| | || || | |||||||||||| |||| |||||||| || | |
Sbjct 60 --TGATCATGATGATGAGGA-GTATAACAACGCGGAAGAATCCGTTTTGCAACAAC-CAA 115
Query 116 GAGAACCAACGAGCC---A-G--GTTATGG--A-----AT----TT-TTATCGGTTACGG 157
||||||| ||||||| | | ||||||| | || || |||||||||| ||
Sbjct 116 GAGAACCTACGAGCCAGAAGGAAGTTATGGTTAGGGTTATGGAATTGTTATCGGTTAAGG 175
Query 158 AGAACCAAGCAAGGACTCTTCTTATTCAGTATCAATGGAACGTTGATAAGTTGTTTTCTG 217
|||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 176 AGAACCAAGCGAGGACTCTTCTTATTCATTATCAATGGAACGTTGATAAGTTGTTTTCTG 235
Query 218 TGTATACTGATCAAGGCAAAGATGTTTTGTTCTCTCGTGCT-g----a--g-----ga-- 263
|||||| |||||||||||||||| ||||||| ||| ||||| | | | ||
Sbjct 236 TGTATATTGATCAAGGCAAAGATCTTTTGTTTTCTTGTGCTGGTCTTACTGTTTTTGACC 295
Query 264 ----agaag--aaggagaaga-caaggaagaggaagaaggaggagaagacgaggaagagg 316
|| ||| ||||| || ||||| ||||||| ||||||||||||||||||||
Sbjct 296 CTTCCTTAGTTAAGTCGAAGAGGAA-GAAGAAGAAGAAGAAGGAGAAGACGAGGAAGAGG 354
Query 317 aagaaggaggagaag-acgaggaagcggaagaaggagg-agaagacg-agg-aagcggaa 372
|||||| |||||||| | | ||| | || || | |||| ||| || | ||| || ||
Sbjct 355 AAGAAGAAGGAGAAGAAGGGGGAGGAGG-AG-ACGAGGAAGAGGAAGAAGGCAAAAAAAA 412
Query 373 -gaaggagt-tgaaga-c-g-a-ggaagaggaagaagacgaaaa-a-g--acg--atg-a 419
|| | ||| || | | | | | ||||||||| | | |||| | | ||| | | |
Sbjct 413 CGATGAAGTGTG-ATATCTGCATGGAAGAGGATTTA-TC-AAAATATGCCACGACAAGAA 469
Query 420 -agTGCAACTAGTTAGCACGGAGTTAGCTGAGAAGTTTGATCGTTTCCTTATTGAATCTT 478
|| ||||||||||||| ||||||||||||||||||||||||||||||| |||| || |
Sbjct 470 TAGAGCAACTAGTTAGCCCGGAGTTAGCTGAGAAGTTTGATCGTTTCCTCGTTGAGTCAT 529
Query 479 ATGTGGAAGATAACAATATGGTGAAGTGGTGTCCAAGCACACCGCATTGCGGGAATGCGA 538
| || |||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 530 ACGTAGAAGATAACAATATGGTGAAGTGGTGTCCAAGCACACCACATTGCGGGAATGCGA 589
Query 539 TACGAAATATCAAAGATGATGGCGATGTTGATGAGGTGGAATGTTCATGTGGACTTCAGT 598
||||||| |||||||||||| |||| ||| ||||||||||||||||||||||||||||
Sbjct 590 TACGAAAAATCAAAGATGATAGCGA---TGACGAGGTGGAATGTTCATGTGGACTTCAGT 646
Query 599 TCTGTTTCAGTTGTTTAAGTGAGTCTCACTCTCCTTGCTCTTGTTTGATGTGGAAGCTAT 658
|||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct 647 TCTGTTTCAGTTGTCTGAGTGAGTCTCACTCTCCTTGCTCTTGTTTGATGTGGAAGCTAT 706
Query 659 GGAAAAAGAAATGTGAAGACGAGTCTGAGACGGTTAATTGGATGACCGTTAACACGAAGC 718
|||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 707 GGAAAAAGAAGTGTGTAGACGAGTCTGAGACGGTTAATTGGATGACCGTTAACACGAAGC 766
Query 719 TGTGTCCCAAATGTAGCAAACCTATTCAAAAGAGAGATGGTTGCAATCACATGACTTGTA 778
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 767 TGTGTCCCAAATGTAGCAAACCTATTCAAAAGAGAGACGGTTGCAATCACATGACTTGTA 826
Query 779 AGTGTGGGCAGCATTTTTGCTGGCTGTGTGGTCAAGCTACTGGAAG-AGATCATTCTTAT 837
||||||| ||| ||||||||||||||||||||||||||||||| | ||| ||| || |
Sbjct 827 AGTGTGGTCAGTTTTTTTGCTGGCTGTGTGGTCAAGCTACTGGA-GCAGAACATAGTT-T 884
Query 838 TCG-AGTATTGCCGGTCATAGTTGTGGTCGGTACAAAGAAGAAAAAGTGAGGCAATTGGA 896
| | ||||| || |||||||||||||||||||||||||| ||||||||||||||| ||||
Sbjct 885 TAGGAGTATCGCTGGTCATAGTTGTGGTCGGTACAAAGATGAAAAAGTGAGGCAAATGGA 944
Query 897 GAGAGCCCAAAGGGATTTAGACAGGTATACACATTACCATTACCGCTACAAAGCACATAT 956
||||||| ||||||||||||||||||| ||||||||||||||||| ||||||| || |
Sbjct 945 GAGAGCCAAAAGGGATTTAGACAGGTACACACATTACCATTACCGATACAAAGTGCACAC 1004
Query 957 CGATTCATTAAAGCTAGAGGACAAACTTAAGAAGAGTATCCTGAAGAAGGCAGTGTTAAA 1016
||||||||||||||||||||| ||||||| |||||||||||||||||||||| |||||||
Sbjct 1005 CGATTCATTAAAGCTAGAGGATAAACTTAGGAAGAGTATCCTGAAGAAGGCACTGTTAAA 1064
Query 1017 TTCTGAAACCAAGGATCAA-AAGGTGTTTAAAGAATACAGTTGGATTATAGATGCAGTCA 1075
||||||||||||||||||| ||| ||||||||||||||||||| ||| |||||||||||
Sbjct 1065 TTCTGAAACCAAGGATCAAGAAGA-GTTTAAAGAATACAGTTGGGTTACAGATGCAGTCA 1123
Query 1076 ACCGGTTATTCAGATCAAGAAGAATTCTTTCGTATTCTTATCCTTTCGTGTTCTACATGT 1135
||||||||||||||||| || | |||||||||||||| |||||||||| |||||||||||
Sbjct 1124 ACCGGTTATTCAGATCACGACGGATTCTTTCGTATTCGTATCCTTTCGCGTTCTACATGT 1183
Query 1136 TTGGCAAAGAGTTGTTCAAAGATGATATGAGCGATGAAGAGAGAAATATAAAGAAGAATC 1195
||||| ||||||||||||||||||| |||||||||||||||||| |||||||||||||||
Sbjct 1184 TTGGCGAAGAGTTGTTCAAAGATGAGATGAGCGATGAAGAGAGAGATATAAAGAAGAATC 1243
Query 1196 TGTTTGAAGATCAGCAGCAACAACTTGAAGGTAATGTTGAGAGACTTTCCAAGATATTAG 1255
||||||||||||||||||||||||||||||||||| |||||| |||||||||||| ||||
Sbjct 1244 TGTTTGAAGATCAGCAGCAACAACTTGAAGGTAATATTGAGAAACTTTCCAAGATTTTAG 1303
Query 1256 AAGAGCCTTTTGATGAGTATGATCATGAAAAAGTTGTGGAG-ATGATGAGACACCTCACC 1314
||||||||||||||||||||| |||||| |||| | | |||| ||| || || | |
Sbjct 1304 AAGAGCCTTTTGATGAGTATGGTCATGAGGAAGTAATA-ATTATGAAGAGTCAACTAATC 1362
Query 1315 AATTTGACTGCTGTGGTTGATA-ACCTCTGCAAGGAAATGTATGAGTGCATTGAGAATGA 1373
|| || |||| ||||||||| || | |||||| ||||||||||||||||||| |||||
Sbjct 1363 AAGATGTGTGCTATGGTTGATACAC-TATGCAAGAAAATGTATGAGTGCATTGAAAATGA 1421
Query 1374 GTTATTAGGTCCACTC-ATATCTGGAATCCACAACATTGCACCTTACAGATCAAAGGGAA 1432
||||||||||||||| | ||||||||||||||||||||||||||||||||||| |||||
Sbjct 1422 CTTATTAGGTCCACTCGA-ATCTGGAATCCACAACATTGCACCTTACAGATCAATGGGAA 1480
Query 1433 TAGAACAAGCTGCTGAGTTTTCTGCTTCTTCCGCTTGTGGTTCAAGC 1479
|||||||||||||| | |||||||||||||| |||||| ||||||||
Sbjct 1481 TAGAACAAGCTGCTAAATTTTCTGCTTCTTCGGCTTGTAGTTCAAGC 1527
> Ahg936538 jgi|Araly1|936538|scaffold_500729.1
Length=1625
Score = 1371 bits (742), Expect = 0.0
Identities = 946/1042 (91%), Gaps = 23/1042 (2%)
Strand=Plus/Plus
Query 427 CTAGTTAG-CACGGAGTTAGCTGAGAAGTTTGATCGTTTCCTTATTGAATCTTATGTGGA 485
|||||||| | |||| ||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 555 CTAGTTAGTC-CGGAATTAGCTGAGAAGTATGATCGTTTCCTTATTGAATCTTATGTGGA 613
Query 486 AGATAACAATATGGTGAAGTGGTGTCCAAGCACACCGCATTGCGGGAATGCGATACGAAA 545
||||||||| |||||||||||||||||||| | |||||||||||||| ||||||||||||
Sbjct 614 AGATAACAAGATGGTGAAGTGGTGTCCAAGTATACCGCATTGCGGGAGTGCGATACGAAA 673
Query 546 TATCAAAGATGATGGCGATGTTGATGAGGTGGAATGTTCATGTGGACTTCAGTTCTGTTT 605
||| |||||||| || || | |||||| |||||||||||||||||||||||||||||
Sbjct 674 GATCGAAGATGAT---GACGTCGTTGAGGTTGAATGTTCATGTGGACTTCAGTTCTGTTT 730
Query 606 CAGTTGTTTAAGTGAGTCTCACTCTCCTTGCTCTTGTTTGATGTGGAAGCTATGGAAAAA 665
||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 731 CAGTTGTTTGAGCGAGTCTCACTCTCCTTGCTCTTGTTTGATGTGGAAGCTATGGAAAAA 790
Query 666 GAAATGTGAAGACGAGTCTGAGACGGTTAATTGGATGACCGTTAACACGAAGCTGTGTCC 725
||| |||| ||||||||||||||||||||||||||| || ||||| ||||||||||||||
Sbjct 791 GAAGTGTGTAGACGAGTCTGAGACGGTTAATTGGATAACGGTTAATACGAAGCTGTGTCC 850
Query 726 CAAATG-TAGCAAACCTA-TTCAAAAGAGAGATGGTTGCAATCACATGACTTGTAAGTGT 783
|||||| || |||||||| ||||||| | |||||||||||||| ||||||||||||||||
Sbjct 851 CAAATGTTA-CAAACCTATTTCAAAACA-AGATGGTTGCAATCTCATGACTTGTAAGTGT 908
Query 784 GGGCAGCATTTTTGCTGGCTGTGTGGTCAAGCTACT--GGAAGAGATCATTCTTATTC-G 840
|||||||||||||| |||||||||||| |||||||| || | || |||| | | | | |
Sbjct 909 GGGCAGCATTTTTGTTGGCTGTGTGGTGAAGCTACTGGGGCA-AG-TCATAC-TGTGCAG 965
Query 841 AGTATTGCCGGTCATAGTTGTGGTCGGTACAAAGAAGAAAAAGTGAGGCAATTGGAGAGA 900
|||||||| |||||||||||||||||||||||||| || ||||| |||||| ||||||||
Sbjct 966 AGTATTGCTGGTCATAGTTGTGGTCGGTACAAAGATGACAAAGTAAGGCAAATGGAGAGA 1025
Query 901 GCCCAAAGGGATTTAGACAGGTATACACATTACCATTACCGCTACAAAGCACATATCGAT 960
||| |||||||||||||||||||||| |||||||||||||||||||||||||||| ||||
Sbjct 1026 GCCAAAAGGGATTTAGACAGGTATACGCATTACCATTACCGCTACAAAGCACATACCGAT 1085
Query 961 TCATTAAAGCTAGAGGACAAACTTAAGAAGAGTATCC-TGAAGAAGGCAGTGTTAAATTC 1019
|| |||||||| ||||| ||||||| ||||||||||| || |||||||||||| |||| |
Sbjct 1086 TCTTTAAAGCTCGAGGATAAACTTAGGAAGAGTATCCTTG-AGAAGGCAGTGTCAAATGC 1144
Query 1020 TGAAACCAAGGATCAA-AAGGTGTTTAAAGAATACAGTTGGATTATAGATGCAGTCAACC 1078
|||||||||||||||| || ||||||||||||||||| ||| |||||||||||||||||
Sbjct 1145 TGAAACCAAGGATCAACAA-GTGTTTAAAGAATACAGCTGGGTTATAGATGCAGTCAACA 1203
Query 1079 GGTTATTCAGATCAAG-AAGAATTCTTTCGTATTCTTATCCTTTCGTGTTCTACATGTTT 1137
|||||||||||||||| ||| ||||||||||||||||||||||||| | |||||||||||
Sbjct 1204 GGTTATTCAGATCAAGAAAG-ATTCTTTCGTATTCTTATCCTTTCGCGCTCTACATGTTT 1262
Query 1138 GGCAAAGAGTTGTTCAAAGATGATATGAGCGATGAAGAGAGAAATATAAAGAAGAATCTG 1197
|| |||||||||| |||||||| |||||||| ||||||||| | || ||||||||||||
Sbjct 1263 GGTGAAGAGTTGTTTAAAGATGAGATGAGCGACGAAGAGAGAGAGATGAAGAAGAATCTG 1322
Query 1198 TTTGAAGATCAGCAGCAACAACTTGAAGGTAATGTTGAGAGACTTTCCAAGATATTAGAA 1257
|||||||||||||||||||||||||||||||||||||||| |||||| ||||| ||||||
Sbjct 1323 TTTGAAGATCAGCAGCAACAACTTGAAGGTAATGTTGAGAAACTTTCTAAGATTTTAGAA 1382
Query 1258 GAGCCTTTTGATGAGTATGATCATGAAAAAGTTGTGGAGATGATGAGACACCTCACCAAT 1317
|||||||||||||||||||||||||| ||||||||||| |||| ||||||||||| ||||
Sbjct 1383 GAGCCTTTTGATGAGTATGATCATGAGAAAGTTGTGGATATGAAGAGACACCTCAACAAT 1442
Query 1318 TTGACTGCTGTGGTTGATAACCTCTGCAAGGAAATGTATGAGTGCATTGAGAATGAGTTA 1377
|||| | || ||||||||||||||||||| ||||||||||||||||||||||||| |||
Sbjct 1443 TTGAGTAATGCGGTTGATAACCTCTGCAAGAAAATGTATGAGTGCATTGAGAATGAATTA 1502
Query 1378 TTAGGTCCACT-CATATCTGGAATCCACAACATTGCACCTTACAGATCAAAGGGAATAGA 1436
|||||||| | || || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1503 CTAGGTCCAATACA-ATTTGGAATCCACAACATTGCACCTTACAGATCAAAGGGAATAGA 1561
Query 1437 ACAAGCTGCTGAGTTTTCTGCT 1458
|||||| ||||||||| ||||
Sbjct 1562 ACAAGCAACTGAGTTTTGTGCT 1583
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55459396720
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5