BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G27770.1
Length=1324
Score E
Sequences producing significant alignments: (Bits) Value
Ahg936544 jgi|Araly1|936544|scaffold_500735.1 1487 0.0
> Ahg936544 jgi|Araly1|936544|scaffold_500735.1
Length=1006
Score = 1487 bits (805), Expect = 0.0
Identities = 922/975 (95%), Gaps = 21/975 (2%)
Strand=Plus/Plus
Query 205 AGaaa-aaaaaaaTGAATCTTGAGAATGTTTTGGAATTCACCAGCTTTGATTACTGGTTT 263
||||| |||||||||| ||||||||||||||||||||| |||||||||||||||||||||
Sbjct 9 AGAAAGAAAAAAATGATTCTTGAGAATGTTTTGGAATTGACCAGCTTTGATTACTGGTTT 68
Query 264 AATTGGAGAGTGTTACTATGTGCTATATGGGTAATAGTTCCAATGATTGTTTCTTTATTA 323
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 69 AATTGGAGAGTGTTACTATGTGCTATATGGGTAATAGCTCCAATGATTGTTTCTTTATTC 128
Query 324 GTCTTATGGAAGTATGAAGATAGTTCAGTTCAAACTCAACCATCACTT-A----A-T-G- 375
|||||||||||||| |||||||||||||| | |||||||||||||||| | | | |
Sbjct 129 GTCTTATGGAAGTACGAAGATAGTTCAGTACCAACTCAACCATCACTTAATGGTAGTGGT 188
Query 376 ---G-T-A--A---TGATGTTTTGTGCATTGATGATGTTTGGAGACCTTGTTTTGAACGA 425
| | | | |||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 189 AATGATGATGATGCTGATGTTTTGTGCATTGATGATGTTTGGAGACCTTGTTTTGAACAA 248
Query 426 ATCCATCCGGGTTGGTTGTTGGGTTTTCGGGTTCTCGGGTTTTGTTTCCTTCTTGCTAAC 485
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 249 ATCCATCCGGGTTGGTTGTTGGGTTTTCGGGTTCTCGGGTTTTGTTTCCTTCTTGCTAAC 308
Query 486 AATATTGCCCGGTTTGCTAATCGTGGATGGCGTATTTACTACTATTATACTCAGTGGACA 545
||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 309 AATATTGTCCGGTTTGCTAATCGTGGATGGCGCATTTACTACTATTATACTCAGTGGACA 368
Query 546 TTCACTTTGATAGCAATCTACTTCGGGATGGGATCATTGCTTTCAATTTATGGATGTTTA 605
||||| |||||||| ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 369 TTCACATTGATAGCGATCTATTTCGGGATGGGATCATTGCTTTCAATTTATGGATGTTTA 428
Query 606 CAATACAAGAAGCAAGGGAACACTG-GACTTATCGCTGATCAAGTAGGAATCGATGCAGA 664
||||||||||||||||||||||| | |||||| ||||||||||||||||||||||||||
Sbjct 429 CAATACAAGAAGCAAGGGAACAC-GAAACTTATTGCTGATCAAGTAGGAATCGATGCAGA 487
Query 665 GAACGGGTTTCGTTCGCCTCTTATAGATGGTGACAACATGGTTTCGTTCGAGAAGAGAAA 724
||| ||| |||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 488 GAATGGGGTTCGTTCGCCCCTTATAGATGGTGACAACATGGTTTCGTTCGAGAAGAGAAA 547
Query 725 AACTTCTGGTTCGGAAGCACTAAAGTCATATGTTCATCTCTTCCAGATTATATATCAGAT 784
|||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 548 AACTTCTGGTTCAGAGGCACTAAAGTCATATGTTCATCTCTTCCAGATTATATATCAGAT 607
Query 785 GGGTGCTGGAGCAGCTGTGCTTACAGACAGTATATATTGGACCGTGATTTTCCCGTTTCT 844
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 608 GGGTGCTGGAGCAGCTGTGCTTACAGACAGTATATATTGGACCGTGATTTTCCCGTTTCT 667
Query 845 GTCTTTACAGGACTATGAGATGAGTTTCATGACTGTGAATTTGCACACAAGCAACCTCGT 904
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 668 GTCTTTACAGGACTATGAGATGAGTTTCATGACTGTGAATTTGCACACGAGCAACCTAGT 727
Query 905 TTTGCTGCTTATTGACACGTTTCTAAACCGTCTGAAATTTCCATTGTTCAGGTTCTCTTA 964
|||||||||||||||||||| ||| ||||||||||||||||| |||||||||||||||||
Sbjct 728 TTTGCTGCTTATTGACACGTCTCTTAACCGTCTGAAATTTCCCTTGTTCAGGTTCTCTTA 787
Query 965 CTTCATCTTATGGACAGGATGTTTCGTTCTTTTCCAGTGGATTCTCCACATGTTTATCTC 1024
||||||||| ||||||||| |||| ||||||||||||||||||||||| |||||||||||
Sbjct 788 CTTCATCTTGTGGACAGGAAGTTTTGTTCTTTTCCAGTGGATTCTCCATATGTTTATCTC 847
Query 1025 CGTTGGGTGGCCATATCCATTTCTCAACCTGTCATTAGACATGGCTCCAGTGTGGTATTT 1084
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 848 CGTAGGGTGGCCATATCCATTTCTCAACCTGTCATTAGACATGGCTCCAGTGTGGTATTT 907
Query 1085 GTTGGTGGCACTCCTGCATCTTCCTTCTTATGGCCTCTTTGCATTAATCGTCAAAATCAA 1144
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 908 GTTGGTGGCACTCCTGCATCTTCCTTCTTATGGCCTCTATGCATTAATCGTCAAAATCAA 967
Query 1145 ATACAAACTCATTTC 1159
||| |||||||||||
Sbjct 968 ATATAAACTCATTTC 982
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49521669183
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5