BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G27785.1
Length=1700
Score E
Sequences producing significant alignments: (Bits) Value
Ahg484568 jgi|Araly1|484568|fgenesh2_kg.5__560__AT3G27785.1 2073 0.0
> Ahg484568 jgi|Araly1|484568|fgenesh2_kg.5__560__AT3G27785.1
Length=1544
Score = 2073 bits (1122), Expect = 0.0
Identities = 1367/1480 (92%), Gaps = 37/1480 (3%)
Strand=Plus/Plus
Query 218 ATCATATGGAGTTCGAGTCAGTGTTCAAAATGCATTATCCGTATCTCGCAGCCGTTATCT 277
||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
Sbjct 87 ATCGTATGGAGTTCGAGTCAGTGATCAAAATGCATTATCCGTATCTCGCAGCCGTTATGT 146
Query 278 ACGATGATAG-CTCCACTTTAAAAGATTTTCATCCATCTCTTACCGATGATTTTTCTTGT 336
|||||||||| || | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 147 ACGATGATAGCCT-CGCTTTAAAAGATTTTCATCCATCTCTTACCGATGATTTTTCTTGT 205
Query 337 GTACACAATGTGCATCACAAACCATCGATGCCTCACACATATGAAATACCATCAAAAGAA 396
||||||||||| ||||| ||||| ||||| ||||||||| |||||||||| |||||||||
Sbjct 206 GTACACAATGTACATCATAAACCCTCGATACCTCACACAAATGAAATACCTTCAAAAGAA 265
Query 397 ACCATTAGGGGCATCACTCCTTCTCCATGCACTGAAGCTTTCGAGGCATGTTTTCATGGC 456
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 266 ACCATTAGGGGCATCACTCCTTCTCCATGCACTGAAGCTTTCGAGGCATATTTTCATGGC 325
Query 457 ACATCCAACGACCATGttttttttGGCATGGCCTATACCACCCCACCAACTA-T--TGAA 513
|||||||||||||| | |||||||||||||||||||||||| ||||||||| | ||||
Sbjct 326 ACATCCAACGACCAAGGGTTTTTTGGCATGGCCTATACCACCTCACCAACTATTGATGAA 385
Query 514 CCCAACGTTTCACATGTCTCACATGACAATACTATGTGGGAAAACGATCAAAACCAAGGA 573
| ||||||||||||||| ||||||||||||||||||||||||| ||||||| |||||||
Sbjct 386 TCTAACGTTTCACATGTCCCACATGACAATACTATGTGGGAAAATGATCAAAGCCAAGGA 445
Query 574 TTCATCTTTGGAACCGAGTCAACCCTCAATCAAGCCATGGCGGACTCTAATCAATTCAAT 633
| | ||||||| |||||||||||| |||||| |||||||| ||| | || | ||
Sbjct 446 TCCGTCTTTGGGACCGAGTCAACCTTCAATCTAGCCATGGTGGA--C---TC---T-AA- 495
Query 634 ATGCCAAAACCACTCTTGAGCGCAAACGAAGACACCATCATGAATCGACGTCAAAATAAC 693
| || | | ||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 496 A--CC---A--A-TCTTGAGCGCAAATGAAGATACCATCATGAATCGACGTCAAAATAAT 547
Query 694 CAGGTAATGATCAAGACCGAGCAGATCAAGAAGAAGAACAAGAGATTTCAGATGAGGAGG 753
||||||||||||| ||||||||||||| |||||||||||||||||| ||||||||||||
Sbjct 548 CAGGTAATGATCAGGACCGAGCAGATCTTGAAGAAGAACAAGAGATTGCAGATGAGGAGG 607
Query 754 ATATGTAAACCCACaaaaaaaGCTAGCATCATCAAAGGACAATGGACTCCTGAAGAAGAC 813
|||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 608 ATATGTAAACCCGCGAAAAAAGCTAGCATCATCAAAGGACAATGGACTCCTGAAGAAGAC 667
Query 814 AAGTTATTGGTGCAGCTAGTGGACCTTCACGGAACTAAAAAATGGTCTCAGATTGCTAAG 873
|||||||||||||| ||||||| ||||| |||||||||||||||||||| ||||||||
Sbjct 668 AAGTTATTGGTGCAATTAGTGGAACTTCATGGAACTAAAAAATGGTCTCAAATTGCTAAA 727
Query 874 ATGCTTCAAGGACGAGTTGGAAAACAGTGCAGAGAAAGGTGGCATAACCATCTCCGTCCC 933
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 728 ATGCTTCAAGGAAGAGTTGGAAAACAGTGCAGAGAAAGGTGGCATAACCATCTCCGTCCC 787
Query 934 GATATCAAGAAAGATGGATGGACTGAAGAAGAGGATATAATACTGATAAAAGCCCATAAG 993
|||||||||||||||| ||||||||||||||||||||| ||||||||||||||||| |||
Sbjct 788 GATATCAAGAAAGATGTATGGACTGAAGAAGAGGATATGATACTGATAAAAGCCCACAAG 847
Query 994 GAGATTGGGAACAGATGGGCTGAGATAGCTCGAAAACTCCCGGGACGCACTGAAAATACG 1053
||||||||||| |||||||||||||| |||||||| |||||||||||||| |||||||||
Sbjct 848 GAGATTGGGAATAGATGGGCTGAGATTGCTCGAAATCTCCCGGGACGCACCGAAAATACG 907
Query 1054 ATCAAGAACCATTGGAACGCGACTAAACGTCGACAACACTCGAGGAGGACTAAAGGAAAA 1113
||||||||||||||||| ||||| ||||||||||||||||||||||| ||||||||||||
Sbjct 908 ATCAAGAACCATTGGAATGCGACAAAACGTCGACAACACTCGAGGAGAACTAAAGGAAAA 967
Query 1114 GATGAAATTTCCCTTTCACTTGGTAGCAACACTCTTCAGAACTACATTAGGTCTGTTACC 1173
|||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 968 GATGAAATCTCCCTTGCACTTGGTAGCAACACTCTTCAGAACTACATTAGGTCTGTTACT 1027
Query 1174 TACAATGATGAT-CCTTTCATGACCGCAAA-TGCAAACGCAAACATTGGTCCAAGAAACA 1231
||||| || ||| || |||||||||||||| | ||||||||||||||||||||| |||||
Sbjct 1028 TACAACGAAGATACC-TTCATGACCGCAAACT-CAAACGCAAACATTGGTCCAAAAAACA 1085
Query 1232 TGAGAGGTAAAGGTAAGAATGTAATGGTTGCGGTCTCGGAGTATGATGAGGGTGAATGTA 1291
|||||| ||||||||||||||||||||||||||||||| ||||||| |||| ||| ||||
Sbjct 1086 TGAGAGATAAAGGTAAGAATGTAATGGTTGCGGTCTCGAAGTATGAAGAGGATGAGTGTA 1145
Query 1292 AGTATATTGTGGATGGTGTGAAT-AACTTGGGTTTAGA-AGATGGAAGGATCAAGATGCC 1349
|||||||||| ||||||||| || |||||||||||||| | |||||||||||||||||||
Sbjct 1146 AGTATATTGTTGATGGTGTG-ATGAACTTGGGTTTAGACA-ATGGAAGGATCAAGATGCC 1203
Query 1350 GTCATTGGCGGCTATGTC-G--GCCTCCGGATCAGCGTCTACTTCTGGTTCTGCGTCTGG 1406
||||||||||||| |||| | ||||||||||||||||||||||||||||||||||| ||
Sbjct 1204 GTCATTGGCGGCTGTGTCAGCTGCCTCCGGATCAGCGTCTACTTCTGGTTCTGCGTCCGG 1263
Query 1407 TTCTGGAAGTGGTGTGACCATGGAGATTGATGAGCCGATGACTGATAGCTGGATGGTGAT 1466
||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||
Sbjct 1264 TTCTGGAAGTGGTGTGACCATGGAGCTTGATGAGCCGATGACTGATAGCTATATGGTGAT 1323
Query 1467 GCATGGATGTGATGAAGTTATGATGAACGAGATTGCTTTGCTGGAGATGATTGCTCATGG 1526
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1324 GCATGGATGTGATGAAGTTATGATGAACGAGATTGCTTTGCTGGAGATGATTGCTCATGG 1383
Query 1527 TCGTCTTTAGACCGTGCAATATAAACAAGTCGAACTTGATTATATCTACCTATATAATTA 1586
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1384 TCGTCTTTAGGCCGTGCAATATAAACAAGTCGAACTTGATTATATCTACCTATATAATTA 1443
Query 1587 TGCTATTTATGAAATTATGTTTGTGCTTTTA-ATTGAAGAATTGGACATGTAATATATAT 1645
|| |||||||||||||| |||||||||||| |||||||||||| | |||||||||||||
Sbjct 1444 TGTTATTTATGAAATTAAGTTTGTGCTTTTTCATTGAAGAATTGAATATGTAATATATAT 1503
Query 1646 TGTGGTTTAATTGAAGGTTTCTTTTGGACTAAACAAAAAT 1685
|||||||||||||||||||||| |||||| ||| ||||||
Sbjct 1504 TGTGGTTTAATTGAAGGTTTCTATTGGAC-AAA-AAAAAT 1541
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63763070130
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5