BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G27810.1

Length=1071
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg322901 jgi|Araly1|322901|fgenesh1_pm.C_scaffold_5000445          1147    0.0  


> Ahg322901 jgi|Araly1|322901|fgenesh1_pm.C_scaffold_5000445
Length=681

 Score = 1147 bits (621),  Expect = 0.0
 Identities = 661/681 (97%), Gaps = 0/681 (0%)
 Strand=Plus/Plus

Query  176  ATGGAGAAAAGAGGAGGAGGAAGTAGTGGAGGTTCGGGATCATCAGCAGAAGCAGAAGTG  235
            |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct  1    ATGGAGAAAAGAGGAGGAGGGAGTAGTGGAGGTTCGGGATCATCAGCAGAAGCAGAAGTG  60

Query  236  AGAAAAGGACCATGGACGATGGAAGAAGATCTTATTCTTATCAACTATATCGCCAACCAC  295
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  61   AGAAAAGGACCATGGACGATGGAAGAAGATCTTATTCTTATCAACTATATCGCCAACCAC  120

Query  296  GGCGATGGTGTTTGGAATTCTCTCGCCAAATCTGCAGGTCTAAAACGAACCGGGAAAAGT  355
            ||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct  121  GGCGATGGTGTTTGGAATTCTCTCGCCAAATCTGCAGGTCTAAAACGCACCGGAAAAAGT  180

Query  356  TGCCGGCTCCGGTGGCTGAACTATCTCCGCCCCGACGTACGACGGGGAAACATCACTCCA  415
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct  181  TGCCGGCTCCGGTGGCTGAACTATCTCCGCCCCGACGTACGACGGGGAAACATCACGCCA  240

Query  416  GAAGAGCAACTTATCATCATGGAACTTCATGCTAAGTGGGGAAACAGGTGGTCGAAAATC  475
            || |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct  241  GAGGAGCAACTTATCATCATGGAACTTCATGCTAAGTGGGGAAACAGGTGGTCAAAAATC  300

Query  476  GCCAAACATCTTCCAGGAAGAACGGACAACGAGATCAAAAATTTCTGGAGGACAAGAATT  535
            ||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct  301  GCCAAACATCTTCCAGGAAGAACCGACAACGAAATCAAAAATTTCTGGAGGACAAGAATT  360

Query  536  CAAAAATACATCAAGCAATCGGATGTAACAACAACATCGTCCGTTGGATCTCATCATAGC  595
            |||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||
Sbjct  361  CAAAAATACATCAAGCAAGCGGATGTAACAACAACATCCTCCGTTGGATCTCATCATAGC  420

Query  596  TCAGAGATCAACGATCAAGCTGCAAGCACGTCGAGCCATAATGTCTTTTGTACACAAGAT  655
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  421  TCAGAGATCAACGATCAAGCTGCAAGCACGTCGAGCCATAATGTCTTTTGTACACAAGAT  480

Query  656  CAAGCGATGGAGACTTATTCTCCTACACCGACATCATATCAACATACCAATATGGAATTC  715
            ||||||||||||||||||||||||||||| || || ||||||||||||||||||||||||
Sbjct  481  CAAGCGATGGAGACTTATTCTCCTACACCAACGTCGTATCAACATACCAATATGGAATTC  540

Query  716  AACTATGGTAACTATTCGGCCGCGGCAGTGACGGCAACCGTGGATTATCCAGTACCGATG  775
            ||||| |||||||||||||||||||||   || |||||||||||||||||| ||||||||
Sbjct  541  AACTACGGTAACTATTCGGCCGCGGCACCAACAGCAACCGTGGATTATCCAATACCGATG  600

Query  776  ACCGTTGATGATCAAACCGGTGAAAACTATTGGGGCATGGATGATATTTGGTCATCAATG  835
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  601  ACCGTTGATGATCAAACCGGTGAAAACTATTGGGGCATGGATGATATTTGGTCATCAATG  660

Query  836  CATTTATTGAATGGTAATTGA  856
            |||||| ||||||||||||||
Sbjct  661  CATTTACTGAATGGTAATTGA  681



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 39876571182


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5