BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G27820.1
Length=1777
Score E
Sequences producing significant alignments: (Bits) Value
Ahg936547 jgi|Araly1|936547|scaffold_500738.1 2643 0.0
> Ahg936547 jgi|Araly1|936547|scaffold_500738.1
Length=1670
Score = 2643 bits (1431), Expect = 0.0
Identities = 1592/1669 (95%), Gaps = 14/1669 (1%)
Strand=Plus/Plus
Query 115 gaagaagaagaagaa-gaaaCCATGGGAAGAGCTTTCGTGTATGTAATTCTCGGAGGAGG 173
||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct 4 GAAGAAGAAGAAGAACG-AACCATGGGAAGAGCTTTCGTGTATGTAATTCTCGGAGGAGG 62
Query 174 TGTTGCTGCTGGTTACGCAGCTCTCGAATTCACCCGTCGAGGTGTCTCCGATGGCGAACT 233
||||||||||||||| || |||||||||||||| ||| ||||||||||||||||||||||
Sbjct 63 TGTTGCTGCTGGTTATGCTGCTCTCGAATTCACTCGTAGAGGTGTCTCCGATGGCGAACT 122
Query 234 CTGTATCATTTCCGAAGAACCCGTTGCACCGTATGAGAGGCCTGCCTTAAGCAAAGGTTT 293
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 123 CTGTATCATTTCCGAAGAACCCGTTGCACCGTATGAGAGGCCTGCATTAAGCAAAGGTTT 182
Query 294 TCTGCTGCCAGAAGCTCCTGCACGGCTTCCTTCTTTCCACACTTGTGTTGGAGCTAATGA 353
||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct 183 TCTGCTGCCAGAAGCGCCGGCACGGCTTCCTTCTTTCCACACTTGTGTTGGAGCTAATGA 242
Query 354 TGAGAAGCTTACACCGAAATGGTACAAGGATCATGGAATTGAATTGGTACTTGGAACTCG 413
|||||||||||| || |||||||||| ||||||||||||||||||||| |||||||||||
Sbjct 243 TGAGAAGCTTACTCCTAAATGGTACAGGGATCATGGAATTGAATTGGTCCTTGGAACTCG 302
Query 414 TGTTAAGTCCGTTGATGTGAGGAGGAAGACTCTTTTATCGAGCACAGGGGAGACTATAAG 473
||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 303 TGTTAAGTCTGTTGATGTTAGGAGGAAGACTCTTTTATCGAGCACAGGGGAGACTATAAG 362
Query 474 TTACAAATTCTTGATCATTGCAACAGGTGCCCGGGCGTTGAAGCTTGAAGAATTTGGGGT 533
|||||||||||||||||||||||||||||| ||| |||||||||| ||||||||||||||
Sbjct 363 TTACAAATTCTTGATCATTGCAACAGGTGCTCGGCCGTTGAAGCTCGAAGAATTTGGGGT 422
Query 534 GGAAGGCTCAGATGCTGAAAATGTTTGTTACTTACGAGATCTAGCTGATGCAAATAGGCT 593
|||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 423 GGAAGGCTCAGATGCTGAAAATGTTTGTTACTTACGAGATCTGGCCGATGCAAATAGGCT 482
Query 594 TGCCACTGTGATTCAATCAAGCTCCAACGGGAATGCGGTTGTTATCGGCGGTGGCTATAT 653
||||||||||||||||||||||||||| |||||||| |||||||| || |||||||| ||
Sbjct 483 TGCCACTGTGATTCAATCAAGCTCCAATGGGAATGCTGTTGTTATTGGTGGTGGCTACAT 542
Query 654 CGGTATGGAGTGTGCTGCATCTTTAGTGATCAACAAAATCAATGTGACGATGGTTTTCCC 713
||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 543 CGGCATGGAGTGTGCTGCATCTTTAGTGATCAACAAAATCAATGTGACAATGGTTTTCCC 602
Query 714 AGAGGCTCACTGCATGGCACGTCTCTTTACGCCCAAGATTGCAAGTTTGTATGAAGACTA 773
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 603 AGAGGCTCACTGCATGGCACGTCTCTTTACGCCTAAGATTGCAAGTTTGTATGAAGACTA 662
Query 774 CTACAGGGCTAAAGGCGTAAAATTTATAAAAGGAACGGTTTTGACATCATTTGAGTTTGA 833
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 663 CTACAGGGCTAAAGGCGTAAAATTCGTAAAAGGAACGGTTTTGACATCATTTGAGTTTGA 722
Query 834 CTCGAACAAAAAGGTTACTGCAGTTAATCTCAAAGACGGGAGCCACTTACCAGCCGACTT 893
||||||||||||||| ||||| |||||||||||||||||||| ||||||||||| |||||
Sbjct 723 CTCGAACAAAAAGGTCACTGCGGTTAATCTCAAAGACGGGAGTCACTTACCAGCAGACTT 782
Query 894 GGTTGTGGTTGGTATCGGGATACGACCAAACACAAGCTTGTTTGAAGGACAGTTAACAAT 953
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 783 GGTTGTGGTTGGAATCGGGATACGACCAAACACAAGCTTGTTTGAAGGACAGTTAACAAT 842
Query 954 AGAGAAAGGAGGGATAAAAGTGAACAGCAGAATGCAGTCAAGTGACAGCTCAGTGTATGC 1013
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 843 AGAGAAAGGAGGGATAAAAGTGAACAGCAGAATGCAGTCAAGTGACAGCTCGGTGTATGC 902
Query 1014 AATAGGCGATGTAGCTACATTTCCAGTGAAACTATTTGGCGAAATGAGGAGGCTTGAGCA 1073
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 903 AATAGGCGATGTAGCTACATTTCCAGTGAAACTATTTGGCGAAATGAGAAGGCTTGAGCA 962
Query 1074 CGTGGACTCAGCTAGGAAATCTGCGCGACACGCAGTTTCAGCCATCATGGATCCAATAAA 1133
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 963 CGTGGACTCAGCTAGGAAATCTGCGCGACATGCAGTTTCAGCCATCATGGATCCAATAAA 1022
Query 1134 GACCGGAGACTTTGATTACTTACCATTTTTCTACTCAAGGGTCTTCGCATTCTCATGGCA 1193
||||||||| ||||| |||||||| || |||||||||||||||||||| |||||||||||
Sbjct 1023 GACCGGAGAATTTGACTACTTACCGTTCTTCTACTCAAGGGTCTTCGCCTTCTCATGGCA 1082
Query 1194 ATTCTATGGAGACCCTACAGGTGATGTTGTGCACTTTGGAGAGTATGAAGACGGGAAATC 1253
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1083 ATTCTATGGAGACCCTACAGGTGATGTTGTGCACTTTGGAGAGTATGAAGACGGGAAATC 1142
Query 1254 ATTTGGAGCGTATTGGGTTAAAAAGGGTCACCTTGTTGGATCTTTTCTTGAAGGAGGCAC 1313
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1143 ATTTGGAGCGTATTGGGTTAAAAAGGGTCACCTTGTTGGATCTTTTCTTGAAGGAGGAAC 1202
Query 1314 TAAAGAAGAATATGAAACTATCTCAAAGGCGACACAATTGAAACCAGCTGTGACTATTGA 1373
|||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 1203 TAAAGAAGAATATGAAACTATCTCGAAGGCGACACAATTGAAACCAGCTGTGACCATTGA 1262
Query 1374 TTTGGAAGAATTGGAAAGAGAAGGACTCGGGTTTGCTCACACGGTTGTGAGTCAGCAGAA 1433
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1263 TTTGGAAGAATTGGAAAGAGAAGGACTCGGGTTTGCTCACACCGTTGTGAGTCAGCAGAA 1322
Query 1434 AGTTCCTGAAGTTAAGGATATTCCGAGCGCTGAGATGGTGAAGCAATCTGCAAGTGTGGT 1493
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1323 AGTTCCTGAAGTTAAGGATATTCCGAGCGCTGAGATGGTGAGGCAATCTGCAAGTGTGGT 1382
Query 1494 CATGATAAAGAAGCCTTTGTATGTATGGCACGCAGCTACTGGAGTCGTTGTGGCTGCATC 1553
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1383 CATGATAAAGAAGCCTTTGTATGTATGGCACGCGGCTACTGGAGTCGTTGTGGCTGCATC 1442
Query 1554 TGTGGCTGCGTTCGCGTTTTGGTATGGGAGGAGACGCCGTAGATGGTGAG-Gaaaaaaaa 1612
|||||||||||||||||||||||| || ||||||||||||||||||||| |
Sbjct 1443 TGTGGCTGCGTTCGCGTTTTGGTACGGAAGGAGACGCCGTAGATGGTGAAAGCCCTCTTC 1502
Query 1613 aaCT-CTTC-AA----GTG-TTGGATTCATTGGAAATGGAA-CTTGCTGTTGTTTGTAGC 1664
|| | ||| || | | ||| ||||||||||||||||| ||||||||||||||||||
Sbjct 1503 AAGTGCTTTTAAAACAGGGGTTGAATTCATTGGAAATGGAAACTTGCTGTTGTTTGTAGC 1562
Query 1665 ATTGGTGGGAGAAATATAGAAG-GGAGAGTCCAAA-CTACTCAATGTGATTACATTGGTA 1722
|||||||||| ||||||||||| |||||||||||| ||||||||||||||||||||||||
Sbjct 1563 ATTGGTGGGA-AAATATAGAAGTGGAGAGTCCAAAACTACTCAATGTGATTACATTGGTA 1621
Query 1723 TACGATTATTATATGCTTCTTTTAAAATGCATAAACGTTTCCACTACAA 1771
||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1622 TACGATTATTATATGCTTCTTTTAAAATGCATAAATGTTTCCACTACAA 1670
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66696018995
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5