BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G27830.1
Length=928
Score E
Sequences producing significant alignments: (Bits) Value
Ahg484572 jgi|Araly1|484572|fgenesh2_kg.5__564__AT3G27830.1 1070 0.0
Ahg484575 jgi|Araly1|484575|fgenesh2_kg.5__567__AT3G27850.1 798 0.0
Ahg899510 jgi|Araly1|899510|Al_scaffold_0004_160 326 2e-88
> Ahg484572 jgi|Araly1|484572|fgenesh2_kg.5__564__AT3G27830.1
Length=763
Score = 1070 bits (579), Expect = 0.0
Identities = 722/787 (92%), Gaps = 26/787 (3%)
Strand=Plus/Plus
Query 71 aaTGGCGTCGACGACTCTCTCAATCGCAACAACAATCCGTTCCTCATCTTATCCTACTCT 130
|||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 1 AATGGCGTCGACGACTCTCTCAATCGCAACCACAATCCGTTCTTCATCTTATCCTACTCT 60
Query 131 CGCTTCCATCAATCACTTCCCTTCCCGAACCACCACCATCGAATTCCCCTCTCGCTTCGG 190
|||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 CGCTTCCACCAACCACTTCCCTTCCCGAACCACCACCATCGAATTCCCCTCTCGCTTCGG 120
Query 191 TGGTGGTTCATCATCCACATTGACCCACCGTGCAACCCATCTCCGTCCAATCGCCGCCGT 250
||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 TGGTGCTTCATCTTCCACATTGACCCACCGTGCAACCCATCTCCGTCCAATCGCCGCCGT 180
Query 251 CGAAGCTCCGGAGAAAATCGAGAAGATCGGATCCGAAATCTCATCCCTAACCCTCGAAGA 310
|||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct 181 CGAAGCTCCGGAGAAAATCGAGAAAATCGGATCCGAAATCTCATCCCTTACCCTCGAAGA 240
Query 311 AGCTCGTATCCTCGTCGACTATCTCCAAGACAAATTCGGTGTCTCCCCACTCTCTTTAGC 370
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 241 AGCTCGTATCCTCGTCGACTATCTCCAAGACAAGTTCGGTGTCTCCCCACTCTCTTTAGC 300
Query 371 CCCCGCAGCAGCGGCGGTTGCTGCTCCAGCCGACGGTGGCGCGGCGGCTGTAGTGGAGGA 430
|| || || ||||| || |||||||||||||||||||| |||||||||||||| || ||
Sbjct 301 TCCTGCTGCTGCGGCTGTAGCTGCTCCAGCCGACGGTGGTGCGGCGGCTGTAGTTGAAGA 360
Query 431 GCAAACAGAGTTCGATGTGGTTATCAATGAAGTTCCGAGTAGTTCTCGTATTGCAGTAAT 490
|| || || ||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 361 ACAGACCGAATTCGATGTGGTTATCAATGAAGTTCCGAGTAGTTCTCGTATTGCAGTGAT 420
Query 491 TAAAGCTGTTAGGGCTTTGACTAGCTTGGCGTTGAAGGAAGCTAAGGAGCTAATCGAAGG 550
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 421 TAAAGCTGTTAGGGCTTTGACTAGCTTGGCGTTGAAGGAAGCTAAGGAGCTAATTGAAGG 480
Query 551 ATTACCAaagaagtttaaagaaggtatcactaaagatgaagctgaagaagctaagaagac 610
||| || |||||||||||||||||| | ||||||||||||||||||||||||||||||||
Sbjct 481 ATTGCCCAAGAAGTTTAAAGAAGGTGTGACTAAAGATGAAGCTGAAGAAGCTAAGAAGAC 540
Query 611 tcttgaagaagCTGGTGCTAAAGTCTCCATTGCTTAAGGTTTTTATaaaaaaaaaaaaaG 670
||||||||||||||||||||||||||||||||||||||||||| |||| |||| |
Sbjct 541 TCTTGAAGAAGCTGGTGCTAAAGTCTCCATTGCTTAAGGTTTT-ATAATAAAA------G 593
Query 671 AAGTTGTTATCTTTTCTGGAATTTGATTGG--TCTTTTGTGTTGTTTAGTATAGTTTGCG 728
|| || |||||||||||| || | || ||||||||||||||||||||||||||||
Sbjct 594 ---TTCTTCTCTTTTCTGGAAATT--TCGGGATCTTTTGTGTTGTTTAGTATAGTTTGCG 648
Query 729 TCTGGAATTGTTGAGAAATTGTTGTAATTTGAATCACATTTGGTTTCCCATTAGCTGATT 788
||||||||||||| | |||||||||||||||||||||||||| ||||||||
Sbjct 649 TCTGGAATTGTTG-----T------AATTTGAATCACATTTGGTTTCCCATAAGCTGATT 697
Query 789 TCGCCATTGATGTGAGCTTTTTGGTAGCTGCACATAACATGTTTGTTGAAATGCCTAAAT 848
| |||||||| ||||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 698 TTGCCATTGACATGAGCTTTT-GGTAGATGCACATAACATGTTTGTTGAAATGCCTAAAT 756
Query 849 GAGGCAA 855
||| |||
Sbjct 757 GAGACAA 763
> Ahg484575 jgi|Araly1|484575|fgenesh2_kg.5__567__AT3G27850.1
Length=833
Score = 798 bits (432), Expect = 0.0
Identities = 692/809 (86%), Gaps = 52/809 (6%)
Strand=Plus/Plus
Query 58 agagtgaaacaaaaaTGGCGTCGACGACTCTCTCAATCGCAACAACAATCCGTTCCTCAT 117
|||||||||||| |||||||||||||||| |||||||||||||||||||||||||||| |
Sbjct 46 AGAGTGAAACAACAATGGCGTCGACGACTGTCTCAATCGCAACAACAATCCGTTCCTCTT 105
Query 118 CTTATCCT-AC-TCTCGCTTCCATCAATCACTTCCCTTCCCGAA-CCACCACCATCGAAT 174
|| | || || || |||| ||| | |||||||||||| || || ||||| | |||||||
Sbjct 106 CTCCT-CTCACTTC-CGCTACCACCCATCACTTCCCTT-CCAAACCCACCGCAATCGAAT 162
Query 175 TCCCCTCTCGCTTCGGTGGTGGTTCATCATCCACATTGACCCACCGTGCAACCCATCTCC 234
|||| | ||| || | ||||| | | | | | ||||||||||| | | ||||
Sbjct 163 TCCCATTTCG--TC--T--CGGTTC-T--T---C--T-AGCCACCGTGCAATCAACCTCC 207
Query 235 GTCCAATCGCCGCCGTCGAAGCTCCGGAGAAAATCGAGAAGATCGGATCCGAAATCTCAT 294
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 208 GTCCAATCGCCGCCGTCGAAGCTCCGGAGAAAATCGAGAAAATCGGATCCGAAATCTCAT 267
Query 295 CCCTAACCCTCGAAGAAGCTCGTATCCTCGTCGACTATCTCCAAGACAAATTCGGTGTCT 354
|||| ||||||||||| |||||||||||||||||||||||||||||||| ||||||||||
Sbjct 268 CCCTTACCCTCGAAGAGGCTCGTATCCTCGTCGACTATCTCCAAGACAAGTTCGGTGTCT 327
Query 355 CCCCACTCTCTTTAGCCCCCGCAGCAGCGGCGGTTGCTGCTCCAGCCGACGGTGGCGCGG 414
||||||||||||||||||| || |||||||| ||||| ||||| || |||||||||||||
Sbjct 328 CCCCACTCTCTTTAGCCCCTGCTGCAGCGGCTGTTGCAGCTCCGGCAGACGGTGGCGCGG 387
Query 415 CGGCTGTAGTGGAGGAGCAAACAGAGTTCGATGTGGTTATCAATGAAGTTCCGAGTAGTT 474
|||||||||||||||| || || || ||||||||||||||||||||||||||||||||||
Sbjct 388 CGGCTGTAGTGGAGGAACAGACCGAATTCGATGTGGTTATCAATGAAGTTCCGAGTAGTT 447
Query 475 CTCGTATTGCAGTAATTAAAGCTGTTAGGGCTTTGACTAGCTTGGCGTTGAAGGAAGCTA 534
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 448 CTCGTATTGCAGTGATTAAAGCTGTTAGGGCTTTGACTAGCTTGGCGTTGAAGGAAGCTA 507
Query 535 AGGAGCTAATCGAAGGATTACCAaagaagtttaaagaaggtatcactaaagatgaagctg 594
|||||||||| ||||||||||| |||||||||||||||||| | ||||||||||||||||
Sbjct 508 AGGAGCTAATTGAAGGATTACCCAAGAAGTTTAAAGAAGGTGTGACTAAAGATGAAGCTG 567
Query 595 aagaagctaagaagactcttgaagaagCTGGTGCTAAAGTCTCCATTGCTTAAGGTTTTT 654
|||||||||||||||| ||||||||||||||||||||||| ||||||||||||| ||| |
Sbjct 568 AAGAAGCTAAGAAGACCCTTGAAGAAGCTGGTGCTAAAGTTTCCATTGCTTAAG-TTTCT 626
Query 655 ATaaaaaaaaaa-aaaGAAGTTGTTATCTTTT-CTGGAATTTGATTGG-TCTTTT-GTGT 710
| || || | ||| || | || ||||||| | ||||||| || | |||||| ||||
Sbjct 627 -TCAACAATCGATAAA-AA-T-GTGATCTTTTTC-GGAATTT-AT-GAATCTTTTTGTGT 679
Query 711 TGTTTAGTATAGTTTGCGTCTGGAATTGTTGA----G-----A-AATT-GTTGTAATTTG 759
|||||||||||||||| || ||| |||||||| | | |||| |||||| ||||
Sbjct 680 TGTTTAGTATAGTTTGTGTTTGGTATTGTTGATTCAGCTTTGAGAATTTGTTGTACTTTG 739
Query 760 AATCACATTTGGTTTCCCATT-AGCTGATTTCGCCATTGATGTGAGCTTTTTGGT--AGC 816
||||| |||||||||| ||| | | ||||| | | || | || || || || ||
Sbjct 740 AATCA-ATTTGGTTTCGTATTTA-CGGATTTTGTC-TTCAACA-AG-TTCTTCGTTTAGA 794
Query 817 TGCACATAACATGTTTGTTGAAATGCCTA 845
|||||||||| |||||||| |||||||||
Sbjct 795 TGCACATAACGTGTTTGTTAAAATGCCTA 823
> Ahg899510 jgi|Araly1|899510|Al_scaffold_0004_160
Length=258
Score = 326 bits (176), Expect = 2e-88
Identities = 223/244 (91%), Gaps = 9/244 (4%)
Strand=Plus/Minus
Query 392 TGCTCCAGCCGACGGTGGCGCGGCGGCTGTAGTGGAGGAGCAAACAGAGTTCGATGTGGT 451
||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct 250 TGCTCCAGCCGACGGTGGCGCGGCGGCTGTAGTGGAGGAGCAAACCGAATTCGATGTGGT 191
Query 452 TA-T------CAATGAAGTTCCGAGTAGTTCTCGTATTGCAGTAATTAAAGCTGTTAGGG 504
|| | |||||||||||| ||||||||||||||||| || ||||||||||||||||
Sbjct 190 TACTGGTTATCAATGAAGTTCCAAGTAGTTCTCGTATTGCTGTGATTAAAGCTGTTAGGG 131
Query 505 CTTTGACTAGCTTGGCGTTGAAGGAAGCTAAG-GAGCTAATCGAAGGATTACCAaagaag 563
||||||||| ||||||||||||||||||| | |||||||| ||||||||||| ||||||
Sbjct 130 CTTTGACTACCTTGGCGTTGAAGGAAGCTT-GTGAGCTAATTGAAGGATTACCCAAGAAG 72
Query 564 tttaaagaaggtatcactaaagatgaagctgaagaagctaagaagactcttgaagaagCT 623
|||||||||||| | |||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 71 TTTAAAGAAGGTGTGACTAAAGATGAAGCTGAATAAGCTAAGAAGACTCTTGAAGAAGCT 12
Query 624 GGTG 627
||||
Sbjct 11 GGTG 8
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34424994051
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5