BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G27835.1

Length=240
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg484573 jgi|Araly1|484573|fgenesh2_kg.5__565__AT3G27835.1          219    1e-56


> Ahg484573 jgi|Araly1|484573|fgenesh2_kg.5__565__AT3G27835.1
Length=177

 Score =  219 bits (118),  Expect = 1e-56
 Identities = 155/172 (90%), Gaps = 5/172 (3%)
 Strand=Plus/Plus

Query  73   CACGCGAAATCTATGGTCGAAGTTAACGCTGCTCACAAATGGTACATTGTCGAAGGTCTA  132
            ||||| |||||||||||||||  ||| | |||||||||||||||||||||||||||||||
Sbjct  7    CACGCAAAATCTATGGTCGAAAATAAGGATGCTCACAAATGGTACATTGTCGAAGGTCTA  66

Query  133  TGCTCAAAATTTCCGGACTGCAATAAGCACTGCAAAGAACAA-AAATTTCC---AGGTGG  188
            |||||||||| |||||||||||||||||| ||||||||| || ||||||||   ||||||
Sbjct  67   TGCTCAAAATATCCGGACTGCAATAAGCATTGCAAAGAA-AACAAATTTCCATTAGGTGG  125

Query  189  AACATGTCTCAAACTTGGTGTTAATATGATGTGTACTTGTATTTATTCATAA  240
            || ||| |||||| |||||||||||||||||||||||||||||| | |||||
Sbjct  126  AAAATGCCTCAAATTTGGTGTTAATATGATGTGTACTTGTATTTCTACATAA  177



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 8286852637


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5