BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G27840.1 Length=597 Score E Sequences producing significant alignments: (Bits) Value Ahg484574 jgi|Araly1|484574|fgenesh2_kg.5__566__AT3G27840.1 756 0.0 > Ahg484574 jgi|Araly1|484574|fgenesh2_kg.5__566__AT3G27840.1 Length=573 Score = 756 bits (409), Expect = 0.0 Identities = 530/586 (90%), Gaps = 17/586 (3%) Strand=Plus/Plus Query 1 ATGGCAGCTACGACTCTTTCCATCGCAACCACAATCCGTTCCTCATCTTTTTCTTCCGGT 60 |||||||||||||||||||||||||||||||| ||||| |||||||||| Sbjct 1 ATGGCAGCTACGACTCTTTCCATCGCAACCACGATCCG------------TTCTTCCGGT 48 Query 61 CTTGCTTCCGCACATCACTTCCCTTCTCGACCCCTCTCGATAGAATTCCCCTTTAGCTTT 120 || ||||| ||||||||||||||||||||||| || | |||||||| || ||||||||| Sbjct 49 CTAGCTTCTACACATCACTTCCCTTCTCGACCCGTCGCTATAGAATTTCCGTTTAGCTTT 108 Query 121 GGTGTTTCTTCTTCTTC-T--ACGCTCAGCCACCGTGCAATCTACCTCCATCCTATATCC 177 ||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||| Sbjct 109 GGTGTTTCTTCTTCTTCTTCCACGCTCAGCCACCGTGCAATCTACCTCCATCCTATATCC 168 Query 178 GCTGTCAAAACTCCTAAGAAAATTAAGAAGATTGGATCCGAGATCTCGTCTCTAACCCTC 237 || |||||| |||| |||||||| ||||| |||||||| || ||||||||||| ||||| Sbjct 169 GCAGTCAAAGCTCCGAAGAAAATAAAGAAAATTGGATCTGAAATCTCGTCTCTGACCCTT 228 Query 238 GAAGAATCCCGCATCCTCGTCGACTATGTCCAGGACAAGTTCGGTGTTTCAATACTCTTT 297 |||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 229 GAAGAAGCCCGCATCCTCGTCGACTATGTCCAGGACAAATTCGGTGTTTCAATACTCTTT 288 Query 298 TCAGCACCTGCTGCAGCGGCTTTACCTCCTCCCCTTGACAATGGTGGTGCGACGGCTTCT 357 ||||||||||||||||||||||| |||||||||| ||||||||||||||| ||||| || Sbjct 289 TCAGCACCTGCTGCAGCGGCTTTCCCTCCTCCCCCAGACAATGGTGGTGCGGCGGCTGCT 348 Query 358 GTGGAGAGGCAGACCACATTCGATGTGGTTATCAATGACGTTCCACGTGGTAATCGTATT 417 |||||||||||||||| |||||||||||||||||||||||||| | ||||||||||||| Sbjct 349 GTGGAGAGGCAGACCAAATTCGATGTGGTTATCAATGACGTTCTAATTGGTAATCGTATT 408 Query 418 GCCGTGATCACAGCCATTAGGGCTATGACTAGCTTGT-CGTTGAGTGAATCGAAAGAGCT 476 |||||||||| ||| |||||||||||||||||||||| | |||| ||||||||||||||| Sbjct 409 GCCGTGATCAAAGCGATTAGGGCTATGACTAGCTTGTGC-TTGAATGAATCGAAAGAGCT 467 Query 477 AATAGAAGGGTTTCCGAAGAAGTTTAAAGAAGGCGTGACCAAAGATGAAGCAGAAGAAGA 536 | ||||||||||||||| |||||||||||||||||||| ||||||||||||||||||| Sbjct 468 CACAGAAGGGTTTCCGAAAAAGTTTAAAGAAGGCGTGACGAAAGATGAAGCAGAAGAAGC 527 Query 537 CAAGACACAGCTCGAAGAAGCTGGTGCCAAGGTTTCCATTGTTTAA 582 ||||| |||||||||||||||||| ||||||||||||||||||||| Sbjct 528 CAAGAAACAGCTCGAAGAAGCTGGCGCCAAGGTTTCCATTGTTTAA 573 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 21863152497 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5