BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G27840.1
Length=597
Score E
Sequences producing significant alignments: (Bits) Value
Ahg484574 jgi|Araly1|484574|fgenesh2_kg.5__566__AT3G27840.1 756 0.0
> Ahg484574 jgi|Araly1|484574|fgenesh2_kg.5__566__AT3G27840.1
Length=573
Score = 756 bits (409), Expect = 0.0
Identities = 530/586 (90%), Gaps = 17/586 (3%)
Strand=Plus/Plus
Query 1 ATGGCAGCTACGACTCTTTCCATCGCAACCACAATCCGTTCCTCATCTTTTTCTTCCGGT 60
|||||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct 1 ATGGCAGCTACGACTCTTTCCATCGCAACCACGATCCG------------TTCTTCCGGT 48
Query 61 CTTGCTTCCGCACATCACTTCCCTTCTCGACCCCTCTCGATAGAATTCCCCTTTAGCTTT 120
|| ||||| ||||||||||||||||||||||| || | |||||||| || |||||||||
Sbjct 49 CTAGCTTCTACACATCACTTCCCTTCTCGACCCGTCGCTATAGAATTTCCGTTTAGCTTT 108
Query 121 GGTGTTTCTTCTTCTTC-T--ACGCTCAGCCACCGTGCAATCTACCTCCATCCTATATCC 177
||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||
Sbjct 109 GGTGTTTCTTCTTCTTCTTCCACGCTCAGCCACCGTGCAATCTACCTCCATCCTATATCC 168
Query 178 GCTGTCAAAACTCCTAAGAAAATTAAGAAGATTGGATCCGAGATCTCGTCTCTAACCCTC 237
|| |||||| |||| |||||||| ||||| |||||||| || ||||||||||| |||||
Sbjct 169 GCAGTCAAAGCTCCGAAGAAAATAAAGAAAATTGGATCTGAAATCTCGTCTCTGACCCTT 228
Query 238 GAAGAATCCCGCATCCTCGTCGACTATGTCCAGGACAAGTTCGGTGTTTCAATACTCTTT 297
|||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 229 GAAGAAGCCCGCATCCTCGTCGACTATGTCCAGGACAAATTCGGTGTTTCAATACTCTTT 288
Query 298 TCAGCACCTGCTGCAGCGGCTTTACCTCCTCCCCTTGACAATGGTGGTGCGACGGCTTCT 357
||||||||||||||||||||||| |||||||||| ||||||||||||||| ||||| ||
Sbjct 289 TCAGCACCTGCTGCAGCGGCTTTCCCTCCTCCCCCAGACAATGGTGGTGCGGCGGCTGCT 348
Query 358 GTGGAGAGGCAGACCACATTCGATGTGGTTATCAATGACGTTCCACGTGGTAATCGTATT 417
|||||||||||||||| |||||||||||||||||||||||||| | |||||||||||||
Sbjct 349 GTGGAGAGGCAGACCAAATTCGATGTGGTTATCAATGACGTTCTAATTGGTAATCGTATT 408
Query 418 GCCGTGATCACAGCCATTAGGGCTATGACTAGCTTGT-CGTTGAGTGAATCGAAAGAGCT 476
|||||||||| ||| |||||||||||||||||||||| | |||| |||||||||||||||
Sbjct 409 GCCGTGATCAAAGCGATTAGGGCTATGACTAGCTTGTGC-TTGAATGAATCGAAAGAGCT 467
Query 477 AATAGAAGGGTTTCCGAAGAAGTTTAAAGAAGGCGTGACCAAAGATGAAGCAGAAGAAGA 536
| ||||||||||||||| |||||||||||||||||||| |||||||||||||||||||
Sbjct 468 CACAGAAGGGTTTCCGAAAAAGTTTAAAGAAGGCGTGACGAAAGATGAAGCAGAAGAAGC 527
Query 537 CAAGACACAGCTCGAAGAAGCTGGTGCCAAGGTTTCCATTGTTTAA 582
||||| |||||||||||||||||| |||||||||||||||||||||
Sbjct 528 CAAGAAACAGCTCGAAGAAGCTGGCGCCAAGGTTTCCATTGTTTAA 573
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 21863152497
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5