BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G27850.1
Length=875
Score E
Sequences producing significant alignments: (Bits) Value
Ahg484575 jgi|Araly1|484575|fgenesh2_kg.5__567__AT3G27850.1 1170 0.0
Ahg484572 jgi|Araly1|484572|fgenesh2_kg.5__564__AT3G27830.1 691 0.0
Ahg899510 jgi|Araly1|899510|Al_scaffold_0004_160 324 8e-88
> Ahg484575 jgi|Araly1|484575|fgenesh2_kg.5__567__AT3G27850.1
Length=833
Score = 1170 bits (633), Expect = 0.0
Identities = 784/852 (92%), Gaps = 29/852 (3%)
Strand=Plus/Plus
Query 1 ACTCACAGAGACACACAAAACAAATCCCAAAGCTTCAGAGGAAGAAGAAGAAGAGAGTGA 60
|||||||||||||||||||||||||||||||| ||| || | |||||||||||||
Sbjct 1 ACTCACAGAGACACACAAAACAAATCCCAAAGATTC------AG-A-AAGAAGAGAGTGA 52
Query 61 GA-AACAATGGCGTCGACGACTCTCTCAATCGCAACAACAATCCGTTCCTCTTCTCCTCT 119
| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 53 AACAACAATGGCGTCGACGACTGTCTCAATCGCAACAACAATCCGTTCCTCTTCTCCTCT 112
Query 120 CACTTCCGCTTCCACTCATCACTTCCTTTCCAAACCCACCGCAATCGAATTCCCATTTCG 179
|||||||||| |||| |||||||||| |||||||||||||||||||||||||||||||||
Sbjct 113 CACTTCCGCTACCACCCATCACTTCCCTTCCAAACCCACCGCAATCGAATTCCCATTTCG 172
Query 180 TCTCAGCTCTTCTTCTAGCCACCGTGCAATCAACCTCCGTCCTATCTCCGCCGTCGAAGC 239
|||| | ||||||||||||||||||||||||||||||||| ||| |||||||||||||
Sbjct 173 TCTC-G--GTTCTTCTAGCCACCGTGCAATCAACCTCCGTCCAATCGCCGCCGTCGAAGC 229
Query 240 TCCGGAGAAAATCGAGAAAATCGGATCCGAAATCTCCT-CCTTAACCCTCGAAGAAGCTC 298
|||||||||||||||||||||||||||||||||||| | |||| ||||||||||| ||||
Sbjct 230 TCCGGAGAAAATCGAGAAAATCGGATCCGAAATCTCATCCCTT-ACCCTCGAAGAGGCTC 288
Query 299 GTATCCTCGTCGACTATCTCCAAGACAAATTCGGTGTCTCCCCACTCTCCTTAGCCCCCG 358
|||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| |
Sbjct 289 GTATCCTCGTCGACTATCTCCAAGACAAGTTCGGTGTCTCCCCACTCTCTTTAGCCCCTG 348
Query 359 CAGCAGCGGCCGTTGCAGCTCCAGCCGACGGTGGCGCGGCGGCTGTAGTGGAGGAGCAAA 418
| |||||||| ||||||||||| || ||||||||||||||||||||||||||||| || |
Sbjct 349 CTGCAGCGGCTGTTGCAGCTCCGGCAGACGGTGGCGCGGCGGCTGTAGTGGAGGAACAGA 408
Query 419 CAGAGTTCGATGTGGTTATCAATGAAGTTCCGAGTAGTTCTCGTATTGCAGTAATTAAAG 478
| || ||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 409 CCGAATTCGATGTGGTTATCAATGAAGTTCCGAGTAGTTCTCGTATTGCAGTGATTAAAG 468
Query 479 CTGTTAGGGCTTTGACTAGCTTGGCGTTGAAGGAAGCTAAGGAGCTAATCGAAGGATTAC 538
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 469 CTGTTAGGGCTTTGACTAGCTTGGCGTTGAAGGAAGCTAAGGAGCTAATTGAAGGATTAC 528
Query 539 CAaagaagtttaaagaaggtatcactaaagatgaagctgaagaagctaagaagactcttg 598
| |||||||||||||||||| | |||||||||||||||||||||||||||||||| ||||
Sbjct 529 CCAAGAAGTTTAAAGAAGGTGTGACTAAAGATGAAGCTGAAGAAGCTAAGAAGACCCTTG 588
Query 599 aagaagCTGGTGCTAAAGTCTCCATTGCTTAAGTTTCTTCAACAATCGGaaaaaaaaaaa 658
||||||||||||||||||| |||||||||||||||||||||||||||| | |||||
Sbjct 589 AAGAAGCTGGTGCTAAAGTTTCCATTGCTTAAGTTTCTTCAACAATCG-ATAAAAA---- 643
Query 659 TGTGATATTTT-CGGAATTTATGAGTCTTTTTGT-T-GTTTAGTATAGTTTGTGTTTGAG 715
|||||| |||| |||||||||||| ||||||||| | ||||||||||||||||||||| |
Sbjct 644 TGTGATCTTTTTCGGAATTTATGAATCTTTTTGTGTTGTTTAGTATAGTTTGTGTTTG-G 702
Query 716 T-TA-TTGATTCAGCTTTTGAGAAATTGTTGTACTTTGAATCAATTTGGTTTCGTATT-A 772
| | ||||||||||||| ||||| ||||||||||||||||||||||||||||||||| |
Sbjct 703 TATTGTTGATTCAGCTTT-GAGAATTTGTTGTACTTTGAATCAATTTGGTTTCGTATTTA 761
Query 773 CAG-TTTTAGTCTTCAACAAGTTCTTCCTCTAGATGCACATAACCTGTTTGTTGAAATGC 831
| | |||| |||||||||||||||||| | |||||||||||||| |||||||| ||||||
Sbjct 762 CGGATTTT-GTCTTCAACAAGTTCTTCGTTTAGATGCACATAACGTGTTTGTTAAAATGC 820
Query 832 CTAGCTCAAAAA 843
||||||||||||
Sbjct 821 CTAGCTCAAAAA 832
> Ahg484572 jgi|Araly1|484572|fgenesh2_kg.5__564__AT3G27830.1
Length=763
Score = 691 bits (374), Expect = 0.0
Identities = 520/587 (89%), Gaps = 23/587 (4%)
Strand=Plus/Plus
Query 66 AATGGCGTCGACGACTCTCTCAATCGCAACAACAATCCGTTCCTCTTCTCCT-CTCACTT 124
|||||||||||||||||||||||||||||| ||||||||||| || ||| | || || |
Sbjct 1 AATGGCGTCGACGACTCTCTCAATCGCAACCACAATCCGTTCTTCATCTTATCCT-AC-T 58
Query 125 C-CGCTTCCACTC-ATCACTT-CCTTTCCAAACCCACCGCAATCGAATTCCCATTTCG-- 179
| ||||||||| | | ||||| |||| || || ||||| | ||||||||||| | |||
Sbjct 59 CTCGCTTCCAC-CAACCACTTCCCTTCCCGAA-CCACCACCATCGAATTCCCCTCTCGCT 116
Query 180 TC--T-CAGC-TCTTCTT---C--T-AGCCACCGTGCAATCAACCTCCGTCCTATCTCCG 229
|| | || || |||| | | | ||||||||||| | | |||||||| ||| |||
Sbjct 117 TCGGTGGTGCTTCATCTTCCACATTGACCCACCGTGCAACCCATCTCCGTCCAATCGCCG 176
Query 230 CCGTCGAAGCTCCGGAGAAAATCGAGAAAATCGGATCCGAAATCTCCT-CCTTAACCCTC 288
|||||||||||||||||||||||||||||||||||||||||||||| | |||| ||||||
Sbjct 177 CCGTCGAAGCTCCGGAGAAAATCGAGAAAATCGGATCCGAAATCTCATCCCTT-ACCCTC 235
Query 289 GAAGAAGCTCGTATCCTCGTCGACTATCTCCAAGACAAATTCGGTGTCTCCCCACTCTCC 348
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 236 GAAGAAGCTCGTATCCTCGTCGACTATCTCCAAGACAAGTTCGGTGTCTCCCCACTCTCT 295
Query 349 TTAGCCCCCGCAGCAGCGGCCGTTGCAGCTCCAGCCGACGGTGGCGCGGCGGCTGTAGTG 408
||||| || || || ||||| || || ||||||||||||||||| ||||||||||||||
Sbjct 296 TTAGCTCCTGCTGCTGCGGCTGTAGCTGCTCCAGCCGACGGTGGTGCGGCGGCTGTAGTT 355
Query 409 GAGGAGCAAACAGAGTTCGATGTGGTTATCAATGAAGTTCCGAGTAGTTCTCGTATTGCA 468
|| || || || || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 356 GAAGAACAGACCGAATTCGATGTGGTTATCAATGAAGTTCCGAGTAGTTCTCGTATTGCA 415
Query 469 GTAATTAAAGCTGTTAGGGCTTTGACTAGCTTGGCGTTGAAGGAAGCTAAGGAGCTAATC 528
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 416 GTGATTAAAGCTGTTAGGGCTTTGACTAGCTTGGCGTTGAAGGAAGCTAAGGAGCTAATT 475
Query 529 GAAGGATTACCAaagaagtttaaagaaggtatcactaaagatgaagctgaagaagctaag 588
|||||||| || |||||||||||||||||| | |||||||||||||||||||||||||||
Sbjct 476 GAAGGATTGCCCAAGAAGTTTAAAGAAGGTGTGACTAAAGATGAAGCTGAAGAAGCTAAG 535
Query 589 aagactcttgaagaagCTGGTGCTAAAGTCTCCATTGCTTAAG-TTT 634
||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 536 AAGACTCTTGAAGAAGCTGGTGCTAAAGTCTCCATTGCTTAAGGTTT 582
> Ahg899510 jgi|Araly1|899510|Al_scaffold_0004_160
Length=258
Score = 324 bits (175), Expect = 8e-88
Identities = 222/243 (91%), Gaps = 9/243 (4%)
Strand=Plus/Minus
Query 376 GCTCCAGCCGACGGTGGCGCGGCGGCTGTAGTGGAGGAGCAAACAGAGTTCGATGTGGTT 435
|||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 249 GCTCCAGCCGACGGTGGCGCGGCGGCTGTAGTGGAGGAGCAAACCGAATTCGATGTGGTT 190
Query 436 A-T------CAATGAAGTTCCGAGTAGTTCTCGTATTGCAGTAATTAAAGCTGTTAGGGC 488
| | |||||||||||| ||||||||||||||||| || |||||||||||||||||
Sbjct 189 ACTGGTTATCAATGAAGTTCCAAGTAGTTCTCGTATTGCTGTGATTAAAGCTGTTAGGGC 130
Query 489 TTTGACTAGCTTGGCGTTGAAGGAAGCTAAG-GAGCTAATCGAAGGATTACCAaagaagt 547
|||||||| ||||||||||||||||||| | |||||||| ||||||||||| |||||||
Sbjct 129 TTTGACTACCTTGGCGTTGAAGGAAGCTT-GTGAGCTAATTGAAGGATTACCCAAGAAGT 71
Query 548 ttaaagaaggtatcactaaagatgaagctgaagaagctaagaagactcttgaagaagCTG 607
||||||||||| | |||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 70 TTAAAGAAGGTGTGACTAAAGATGAAGCTGAATAAGCTAAGAAGACTCTTGAAGAAGCTG 11
Query 608 GTG 610
|||
Sbjct 10 GTG 8
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32404479450
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5