BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G27860.1
Length=1959
Score E
Sequences producing significant alignments: (Bits) Value
Ahg484576 jgi|Araly1|484576|fgenesh2_kg.5__568__AT3G27860.1 2388 0.0
Ahg922928 jgi|Araly1|922928|scaffold_104209.1 351 8e-96
> Ahg484576 jgi|Araly1|484576|fgenesh2_kg.5__568__AT3G27860.1
Length=1986
Score = 2388 bits (1293), Expect = 0.0
Identities = 1786/2010 (89%), Gaps = 90/2010 (4%)
Strand=Plus/Plus
Query 1 ATGGGGAATATTCTACCGACTGGGTCTAGGGTTTCTGAGAACGAGGGTTCTGATGACAAC 60
||||||||||||||||||||||| ||||||||||||||||| || ||||||||||| ||
Sbjct 1 ATGGGGAATATTCTACCGACTGGTTCTAGGGTTTCTGAGAATGATGGTTCTGATGATGAC 60
Query 61 AAATTGAAGGAGCACGATGTTAAGATGGAGAATGTTAA-G--GAAGACTCTGAACAAATT 117
|||||||||| ||||||||||||||||||||||||| | || |||||||||||||||
Sbjct 61 CAATTGAAGGAAAACGATGTTAAGATGGAGAATGTTAACGAAGACGACTCTGAACAAATT 120
Query 118 GGAGATAATGTGAGGAGTGGGGTTTCTTCATTGAGAGATAATTTT---G----A-A-GAA 168
| |||| |||||| ||||| |||||| |||||||||||||||||| | | | |||
Sbjct 121 GAAGATTATGTGATGAGTGAGGTTTCGTCATTGAGAGATAATTTTGAAGAACAAGAGGAA 180
Query 169 TTAGAAAATGGGTTTCATGTGGGAGATTTTGTTTGGGGAGAAGAAGCCAATAGTCAACAA 228
|||||||||||||||||||| || ||||||||||||||| |||||| ||||||||||||
Sbjct 181 TTAGAAAATGGGTTTCATGTTGGTGATTTTGTTTGGGGAAAAGAAGTTAATAGTCAACAA 240
Query 229 TGGTGGCCAGGTCAGATTTATGATTCTTTAGATGCTTCAGACTTGGCTTTGAAGACAATG 288
||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 241 TGGTGGCCAGGTCAGATTTATGATTCTTTAGATGCTTCAGATTTGGCATTGAAGACAATG 300
Query 289 CAGAAAGG-TAAATTACTTGTGGCGTATTTTGGAGATGGGA-GCTTTTTTGGTTGGTGTA 346
|| ||||| ||||||||||||||| |||||||||||||||| | |||| | ||||||||
Sbjct 301 CA-AAAGGGTAAATTACTTGTGGCTTATTTTGGAGATGGGAAG-TTTT--G-TTGGTGTA 355
Query 347 ATCCATTGGAATTGAAACCGTTTCTTGAGAATTTCAAAGAGTTTTCGAAGATGAGTGATT 406
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
Sbjct 356 ATCCATTGGAATTGAAACCGTTTCTTGAGAATTTTAAAGAGTTTTCGAAGATGAGTGAAT 415
Query 407 CGAGAAGGTTTCTTCTTGCTGTGGAAGATGCTGTGAGAGAGATTGGTGAGCATGTTGAG- 465
| | |||||||||| |||||||||||| |||||||||||||||||||| |||||||||
Sbjct 416 CTAAAAGGTTTCTTAGTGCTGTGGAAGAAGCTGTGAGAGAGATTGGTGAACATGTTGAGC 475
Query 466 AAGTTTTTGGTTTGTGATGACGCTGCTTTAGTTAGTTCTGTAGCTTTGAATTTGGGGATT 525
|| |||||||||||||||||||| ||||| |||||||||||||||||||||| |||||||
Sbjct 476 AA-TTTTTGGTTTGTGATGACGCGGCTTTGGTTAGTTCTGTAGCTTTGAATTCGGGGATT 534
Query 526 AAGGATGGTGTTGTTGTGCCTGATGTTAGAAGAAAGATTATATCGTCTTTGGTTCTTGAA 585
||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 535 AAGGAAGGTGTTGTTGTGCCTGATGTTAGAAGAGAGATTATATCGTCTTTGGTTCTTGAA 594
Query 586 AACCCCGGTGTTGTTCTTGAAGATGTTAAAAGACTTGCCATGACGGTTAGATTT-GATGA 644
|| || || ||||||||||||||||||||||||||||| | ||| ||||| ||| | |||
Sbjct 595 AATCCTGGAGTTGTTCTTGAAGATGTTAAAAGACTTGCGAAGACAGTTAGTTTTAG-TGA 653
Query 645 TTTGTTAGAGATTGAGGTTTTGAGGAGGAAGATATCGGCGTTTTATCGGTGTAAAGGAAG 704
|||| |||||||||||||||||| |||||||||||| |||||||||||||||||||||||
Sbjct 654 TTTGCTAGAGATTGAGGTTTTGAAGAGGAAGATATCTGCGTTTTATCGGTGTAAAGGAAG 713
Query 705 GTTTGATTTAGCTAAGTTTGATGAACATCGATATATTATAGGACTTGAAGACAAAGAGCA 764
||||||||||||||||||||||||||||| ||||||||| ||||||||| |||||||| |
Sbjct 714 GTTTGATTTAGCTAAGTTTGATGAACATCAATATATTATTGGACTTGAACACAAAGAGGA 773
Query 765 TGAATCTTGTCAGAGATTATTGAGAAAGTGTTCAGGTTTTGCTA-GCAAAAAGAGGAAAT 823
||||||||||||||||| ||||||||||||| |||| ||||||| | |||||||||||||
Sbjct 774 TGAATCTTGTCAGAGATCATTGAGAAAGTGTACAGGGTTTGCTATG-AAAAAGAGGAAAT 832
Query 824 GTGGTGATGTAGCAACCACTGGTTCTACTACTTTGAGGAAGAAAAGACTGAGTGAAGTTT 883
|||||||||| |||||||||||||||||||||||||||| || ||||||||||||||| |
Sbjct 833 GTGGTGATGTGGCAACCACTGGTTCTACTACTTTGAGGAGGAGAAGACTGAGTGAAGTAT 892
Query 884 CGAAGATTGAA-ACCGCTGAGAAAGAAATTAGTAACGGGAAGAGTTTGTCGTCGAGGAAG 942
||||||||||| || |||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 893 CGAAGATTGAACAC-GCTGAGGAAGAAATTAGTAACGGGAAGAGTTTGTCGTCGAGGAAG 951
Query 943 AGAAAGAGCAAAAGGGGTTTGGATGAGAATGATGATGATGGGATTGAGAAAAGAGAAGAG 1002
|| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 952 AGGAAGAGCAAAATGGGTTTGGATGAGAATGATGATGATGGGATTGAGAAAAGAGAAGAG 1011
Query 1003 TCGAACGACTCAAACCATTTAGAAGAGA--G----------TG----AGA-A--GAAA-- 1041
|| ||||||||||||||||||||||||| | || ||| | ||||
Sbjct 1012 TCAAACGACTCAAACCATTTAGAAGAGACTGAGAAAAAAGATGGTTCAGATATCGAAATT 1071
Query 1042 GATG---ATTTAGCAACTCCATTGGCTTCAATCTGCAAAAGGCTCAATGTTGATGTTTCT 1098
|||| |||||||||||||||||||||||||||||||||||||||| ||||||||| ||
Sbjct 1072 GATGTTGATTTAGCAACTCCATTGGCTTCAATCTGCAAAAGGCTCAAGGTTGATGTTACT 1131
Query 1099 TCATGTGTTAAAAGGTGTAATGGAAATGGCGAGGCAATATTGCAGACAGGTAAAAGAGAG 1158
||| ||||||||||| | ||||||||||||||| | |||||||| ||| |||||||||||
Sbjct 1132 TCAAGTGTTAAAAGGAGCAATGGAAATGGCGAGACGATATTGCAAACATGTAAAAGAGAG 1191
Query 1159 AGGAAGAAAAGCAAGTATCTTTCTCCTGAATACATGACAGATTTTAGTTGCAGAGCGAGA 1218
||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1192 AGGAAGAAAAGTAAGTATCTTTCGCCTGAATACATGACAGATTTTAGTTGCAGAGCGAGA 1251
Query 1219 AAGATCAAAATAGAATCTGCTGAATCAAGTCAGATCCAAGTAGCAGTGCGAATGACAACG 1278
|||| |||||||||||||||||||||||||||||||| |||||||| |||||| | | ||
Sbjct 1252 AAGAGCAAAATAGAATCTGCTGAATCAAGTCAGATCCGAGTAGCAGAGCGAAT-A-A-CG 1308
Query 1279 CCT-AATACAGCCATCGATGTTGTGAAACTGGGAGCTACACCAGAGGAAATGCTGGCTCT 1337
|| || | ||| |||||| ||||||||||||||| |||| ||||||||||||||| |||
Sbjct 1309 ACTGAAAA-AGCTATCGATTTTGTGAAACTGGGAGTTACATCAGAGGAAATGCTGGATCT 1367
Query 1338 AATCCGTGCGGCTGCTCTCAATGCACAATATCCAAAAGACTATAATAGTACCTCATGTGA 1397
||||||||| || |||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1368 AATCCGTGCAGCGGCTCTCAATGCACAATATCCAAAAGACTATAATA---CCTCATGTGA 1424
Query 1398 CATGGTAAGAGAGTTTGTGTCCAATTATCGAAGCTTCAATAACAAGAGGAACCTTTCAGA 1457
||||||||||||||||||||||| |||||||||||||||||||||||| ||| |||||||
Sbjct 1425 CATGGTAAGAGAGTTTGTGTCCACTTATCGAAGCTTCAATAACAAGAGAAACATTTCAGA 1484
Query 1458 TGTAGAGAAGCAGCCTGAAGT-GAA-AC-AGGAAATAGTGGATGAGAAA-GAGA--AAAC 1511
||||||||||||||||||||| | | || ||| || | ||||| || | |||
Sbjct 1485 TGTAGAGAAGCAGCCTGAAGTAGTGGATGAG-AAAGAGCAAACCAGAAATGA-ACCAAAT 1542
Query 1512 CAGAA--A-TGAACCAGGTGTTGAGCTATATATCAAGACTGGTTTTGGTTCTACTCTGCC 1568
|||| | | | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1543 GAGAAGCAATTTTC-AGGTGTTGAGCTATATATCAAGACTGGTTTTGGTTCTACTCTGCC 1601
Query 1569 TTCAAAAGATGATTTGATCAAAACATACGAAAAGTTTGGAGCTTTAGACAAAGAGAGAAG 1628
|||||||||||||||||| | | ||||||||||||||||||||| ||||||||||||||
Sbjct 1602 TTCAAAAGATGATTTGATTGATATATACGAAAAGTTTGGAGCTTTGGACAAAGAGAGAAG 1661
Query 1629 CTATATGTTCAACAATAACTCATGCTCATGCGTTGCCTT-TGTGAATGCATCTGATGGAG 1687
|||||| ||| |||| ||||||||| || |||||||||| | | ||||||||||||||||
Sbjct 1662 CTATATCTTCGACAACAACTCATGCGCACGCGTTGCCTTCT-TCAATGCATCTGATGGAG 1720
Query 1688 AAGAAGCTTTTAACAGGTCATTAGAGAAATGTCCATTTGCCACTACTTCCACAGTAACAT 1747
|| |||| ||||||| ||| ||||||||||| |||||||| |||||||||||||||||||
Sbjct 1721 AACAAGCATTTAACAAGTCGTTAGAGAAATGCCCATTTGCTACTACTTCCACAGTAACAT 1780
Query 1748 TCAAGCTCGAGTATCCATCTTCTGCTTCATCTGAGAAGAAGGAAGCTGAAACAAGAAAGG 1807
|||||||| |||||||||||||||||||| |||| || | || || ||| |
Sbjct 1781 TCAAGCTCAAGTATCCATCTTCTGCTTCACCTGA-AA-AT-----CTTAATGG-GAA-GA 1831
Query 1808 GCGTAACAGAAATCGAGTGTTTGAAAGAGAAGCTCGAGGGGATAAGAGCATTGTTAGATC 1867
|| |||||||||||||||||||||||||| |||| ||||| | ||||| | || |
Sbjct 1832 -CG-----GAAATCGAGTGTTTGAAAGAGAAGCTTGAGGAGATAAAATCATTGCTGGAAC 1885
Query 1868 AATCAGAGGGAAAGATTACGGAAGAATTGAAAATGAAACTTGAAGATGAA-TCAAGAAAC 1926
||||||||||||||||||| ||||||||||| ||||||||||||||| || |||||||||
Sbjct 1886 AATCAGAGGGAAAGATTACAGAAGAATTGAAGATGAAACTTGAAGAT-AAGTCAAGAAAC 1944
Query 1927 TTGCTTGACAAGGTAAGGAAGATGATTATT 1956
||||||||||||||||||||||||||||||
Sbjct 1945 TTGCTTGACAAGGTAAGGAAGATGATTATT 1974
> Ahg922928 jgi|Araly1|922928|scaffold_104209.1
Length=786
Score = 351 bits (190), Expect = 8e-96
Identities = 282/325 (87%), Gaps = 12/325 (4%)
Strand=Plus/Plus
Query 396 GATGAGTGATTCGAGAAG-GTTTCTTCT-TGCTGTGGAAGATGCTGTGAGAGAGATTGGT 453
|||||||||||| | ||| |||||| | ||| |||||||| | |||||||||||| |||
Sbjct 25 GATGAGTGATTCTA-AAGCCTTTCTT-TGTGCCGTGGAAGAAGATGTGAGAGAGATCGGT 82
Query 454 GAGCATGTTGAG-AAGTTTTTGGTTTGTGATGACGCTGCTTTAGTTAGTTCTGTAGCTTT 512
|| ||||||||| || |||||||||||||||||||| |||| ||||||||| |||||||
Sbjct 83 GAACATGTTGAGCAA-TTTTTGGTTTGTGATGACGCGGCTTCGGTTAGTTCTATAGCTTT 141
Query 513 GAATTTGGGGATTAAGGATGGTGTT-GTTGTGCCTGATGTTAGAAGAAAGATTATATCGT 571
||||| ||||||| ||| ||| || | ||||||||||||||||||| ||||||||||||
Sbjct 142 GAATTCGGGGATTCTGGAAGGTATTAG-TGTGCCTGATGTTAGAAGAGAGATTATATCGT 200
Query 572 CTTTGGTTCTTGAAAACCCCGGTGTTGTTCTTGAAGATGTTAAAAGACTTGCCATGACGG 631
|||||||||| ||||| | || ||||||||||||||||||||||||||||| | || ||
Sbjct 201 CTTTGGTTCTGGAAAATCATGGAGTTGTTCTTGAAGATGTTAAAAGACTTGCGAAGATGG 260
Query 632 TTAGATTT-GATGATTTGTTAGAGATTGAGGTTTTGAGGAGGAAGATATCG-GCGTTTTA 689
|||| ||| | ||||||||||||||||||| |||||| |||||| ||||| | ||||||
Sbjct 261 TTAGTTTTAG-TGATTTGTTAGAGATTGAGTTTTTGAAGAGGAAAATATCTAG-GTTTTA 318
Query 690 TCGGTGTAAAGGAAGGTTTGATTTA 714
||||||||| |||||||||||||||
Sbjct 319 TCGGTGTAATGGAAGGTTTGATTTA 343
Score = 276 bits (149), Expect = 5e-73
Identities = 357/449 (80%), Gaps = 47/449 (10%)
Strand=Plus/Plus
Query 784 TTGAGAAAGTGTTCAGGTTTTGCTAGCAAAAAGAGGAAATGTGGTGATGTAGC-AACCAC 842
|||| |||||||||||| |||||||| ||||||||||||| ||| ||| ||| || |
Sbjct 350 TTGACAAAGTGTTCAGGGTTTGCTAGGAAAAAGAGGAAATTTGGCAATGAAGCTAATC-T 408
Query 843 TGGT--TCTA-CTA-CTTTGAGGAAGAAAAGACTGAGTGAAGTTTCGAAGATTGAAACCG 898
|||| | || | | | || | | | | ||| |||||||||||||||||| |
Sbjct 409 TGGTGATGTAGCAACCACTG-GTTTTACTACTTTTAGTAAAGTTTCGAAGATTGAAAATG 467
Query 899 CTGAGAAAGAAATTAGTAACGGGAAGAGTTTGTCGTCGAGGAAGA-GAAAGAGCAAAAGG 957
|| || ||||||||||||| |||||||||||||| |||||||||| |||| |||||||||
Sbjct 468 CTAAGGAAGAAATTAGTAATGGGAAGAGTTTGTCCTCGAGGAAGAGGAAA-AGCAAAAGG 526
Query 958 GGTTTGGATGAGAATGATGATGATGGGATTGAGAAAAGAGAAGAGTCGAACGACTCAAAC 1017
|||||| || | ||| ||||||||||||||| ||||||||||||||| || |||||||||
Sbjct 527 GGTTTGAATTATAATAATGATGATGGGATTGGGAAAAGAGAAGAGTCAAAGGACTCAAAC 586
Query 1018 CATTTAGAAGAGAGT--G-AG--A-A-GA---A---A--G--A-------TGATTTAGCA 1053
||||||||||||||| | || | | || | | | | |||||||| |
Sbjct 587 CATTTAGAAGAGAGTGAGAAGAAAGATGATTCATGTATCGAAATTGGTGTTGATTTAGGA 646
Query 1054 ACTCCATTGGCTTCAATCTGCAAAAGGCTCAATGTTGATGTTTCTTCATGTGTTAAAAGG 1113
|||||||||||||||||||||||||||||||| ||| ||||||||||| |||||||||||
Sbjct 647 ACTCCATTGGCTTCAATCTGCAAAAGGCTCAAGGTTTATGTTTCTTCAAGTGTTAAAAGG 706
Query 1114 TGTAATGGAAATGGCGAGGCAATATTGCAGACAGGTAAAAGAGAGAGGAAGAAAAGCAAG 1173
| ||||||||||||||| | ||| |||||||||||||||||||||||||
Sbjct 707 AGCAATGGAAATGGCGAG--A------CAGT----TAAAAGAGAGAGGAAGAAAAGCAAG 754
Query 1174 TATCTTTCTCCTGAATACATGACAGATTT 1202
|||||||| ||||||||||||||||||
Sbjct 755 TATCTTTCA--TGAATACATGACAGATTT 781
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 73628443585
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5