BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G27860.1 Length=1959 Score E Sequences producing significant alignments: (Bits) Value Ahg484576 jgi|Araly1|484576|fgenesh2_kg.5__568__AT3G27860.1 2388 0.0 Ahg922928 jgi|Araly1|922928|scaffold_104209.1 351 8e-96 > Ahg484576 jgi|Araly1|484576|fgenesh2_kg.5__568__AT3G27860.1 Length=1986 Score = 2388 bits (1293), Expect = 0.0 Identities = 1786/2010 (89%), Gaps = 90/2010 (4%) Strand=Plus/Plus Query 1 ATGGGGAATATTCTACCGACTGGGTCTAGGGTTTCTGAGAACGAGGGTTCTGATGACAAC 60 ||||||||||||||||||||||| ||||||||||||||||| || ||||||||||| || Sbjct 1 ATGGGGAATATTCTACCGACTGGTTCTAGGGTTTCTGAGAATGATGGTTCTGATGATGAC 60 Query 61 AAATTGAAGGAGCACGATGTTAAGATGGAGAATGTTAA-G--GAAGACTCTGAACAAATT 117 |||||||||| ||||||||||||||||||||||||| | || ||||||||||||||| Sbjct 61 CAATTGAAGGAAAACGATGTTAAGATGGAGAATGTTAACGAAGACGACTCTGAACAAATT 120 Query 118 GGAGATAATGTGAGGAGTGGGGTTTCTTCATTGAGAGATAATTTT---G----A-A-GAA 168 | |||| |||||| ||||| |||||| |||||||||||||||||| | | | ||| Sbjct 121 GAAGATTATGTGATGAGTGAGGTTTCGTCATTGAGAGATAATTTTGAAGAACAAGAGGAA 180 Query 169 TTAGAAAATGGGTTTCATGTGGGAGATTTTGTTTGGGGAGAAGAAGCCAATAGTCAACAA 228 |||||||||||||||||||| || ||||||||||||||| |||||| |||||||||||| Sbjct 181 TTAGAAAATGGGTTTCATGTTGGTGATTTTGTTTGGGGAAAAGAAGTTAATAGTCAACAA 240 Query 229 TGGTGGCCAGGTCAGATTTATGATTCTTTAGATGCTTCAGACTTGGCTTTGAAGACAATG 288 ||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||| Sbjct 241 TGGTGGCCAGGTCAGATTTATGATTCTTTAGATGCTTCAGATTTGGCATTGAAGACAATG 300 Query 289 CAGAAAGG-TAAATTACTTGTGGCGTATTTTGGAGATGGGA-GCTTTTTTGGTTGGTGTA 346 || ||||| ||||||||||||||| |||||||||||||||| | |||| | |||||||| Sbjct 301 CA-AAAGGGTAAATTACTTGTGGCTTATTTTGGAGATGGGAAG-TTTT--G-TTGGTGTA 355 Query 347 ATCCATTGGAATTGAAACCGTTTCTTGAGAATTTCAAAGAGTTTTCGAAGATGAGTGATT 406 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| | Sbjct 356 ATCCATTGGAATTGAAACCGTTTCTTGAGAATTTTAAAGAGTTTTCGAAGATGAGTGAAT 415 Query 407 CGAGAAGGTTTCTTCTTGCTGTGGAAGATGCTGTGAGAGAGATTGGTGAGCATGTTGAG- 465 | | |||||||||| |||||||||||| |||||||||||||||||||| ||||||||| Sbjct 416 CTAAAAGGTTTCTTAGTGCTGTGGAAGAAGCTGTGAGAGAGATTGGTGAACATGTTGAGC 475 Query 466 AAGTTTTTGGTTTGTGATGACGCTGCTTTAGTTAGTTCTGTAGCTTTGAATTTGGGGATT 525 || |||||||||||||||||||| ||||| |||||||||||||||||||||| ||||||| Sbjct 476 AA-TTTTTGGTTTGTGATGACGCGGCTTTGGTTAGTTCTGTAGCTTTGAATTCGGGGATT 534 Query 526 AAGGATGGTGTTGTTGTGCCTGATGTTAGAAGAAAGATTATATCGTCTTTGGTTCTTGAA 585 ||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 535 AAGGAAGGTGTTGTTGTGCCTGATGTTAGAAGAGAGATTATATCGTCTTTGGTTCTTGAA 594 Query 586 AACCCCGGTGTTGTTCTTGAAGATGTTAAAAGACTTGCCATGACGGTTAGATTT-GATGA 644 || || || ||||||||||||||||||||||||||||| | ||| ||||| ||| | ||| Sbjct 595 AATCCTGGAGTTGTTCTTGAAGATGTTAAAAGACTTGCGAAGACAGTTAGTTTTAG-TGA 653 Query 645 TTTGTTAGAGATTGAGGTTTTGAGGAGGAAGATATCGGCGTTTTATCGGTGTAAAGGAAG 704 |||| |||||||||||||||||| |||||||||||| ||||||||||||||||||||||| Sbjct 654 TTTGCTAGAGATTGAGGTTTTGAAGAGGAAGATATCTGCGTTTTATCGGTGTAAAGGAAG 713 Query 705 GTTTGATTTAGCTAAGTTTGATGAACATCGATATATTATAGGACTTGAAGACAAAGAGCA 764 ||||||||||||||||||||||||||||| ||||||||| ||||||||| |||||||| | Sbjct 714 GTTTGATTTAGCTAAGTTTGATGAACATCAATATATTATTGGACTTGAACACAAAGAGGA 773 Query 765 TGAATCTTGTCAGAGATTATTGAGAAAGTGTTCAGGTTTTGCTA-GCAAAAAGAGGAAAT 823 ||||||||||||||||| ||||||||||||| |||| ||||||| | ||||||||||||| Sbjct 774 TGAATCTTGTCAGAGATCATTGAGAAAGTGTACAGGGTTTGCTATG-AAAAAGAGGAAAT 832 Query 824 GTGGTGATGTAGCAACCACTGGTTCTACTACTTTGAGGAAGAAAAGACTGAGTGAAGTTT 883 |||||||||| |||||||||||||||||||||||||||| || ||||||||||||||| | Sbjct 833 GTGGTGATGTGGCAACCACTGGTTCTACTACTTTGAGGAGGAGAAGACTGAGTGAAGTAT 892 Query 884 CGAAGATTGAA-ACCGCTGAGAAAGAAATTAGTAACGGGAAGAGTTTGTCGTCGAGGAAG 942 ||||||||||| || |||||| |||||||||||||||||||||||||||||||||||||| Sbjct 893 CGAAGATTGAACAC-GCTGAGGAAGAAATTAGTAACGGGAAGAGTTTGTCGTCGAGGAAG 951 Query 943 AGAAAGAGCAAAAGGGGTTTGGATGAGAATGATGATGATGGGATTGAGAAAAGAGAAGAG 1002 || |||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 952 AGGAAGAGCAAAATGGGTTTGGATGAGAATGATGATGATGGGATTGAGAAAAGAGAAGAG 1011 Query 1003 TCGAACGACTCAAACCATTTAGAAGAGA--G----------TG----AGA-A--GAAA-- 1041 || ||||||||||||||||||||||||| | || ||| | |||| Sbjct 1012 TCAAACGACTCAAACCATTTAGAAGAGACTGAGAAAAAAGATGGTTCAGATATCGAAATT 1071 Query 1042 GATG---ATTTAGCAACTCCATTGGCTTCAATCTGCAAAAGGCTCAATGTTGATGTTTCT 1098 |||| |||||||||||||||||||||||||||||||||||||||| ||||||||| || Sbjct 1072 GATGTTGATTTAGCAACTCCATTGGCTTCAATCTGCAAAAGGCTCAAGGTTGATGTTACT 1131 Query 1099 TCATGTGTTAAAAGGTGTAATGGAAATGGCGAGGCAATATTGCAGACAGGTAAAAGAGAG 1158 ||| ||||||||||| | ||||||||||||||| | |||||||| ||| ||||||||||| Sbjct 1132 TCAAGTGTTAAAAGGAGCAATGGAAATGGCGAGACGATATTGCAAACATGTAAAAGAGAG 1191 Query 1159 AGGAAGAAAAGCAAGTATCTTTCTCCTGAATACATGACAGATTTTAGTTGCAGAGCGAGA 1218 ||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 1192 AGGAAGAAAAGTAAGTATCTTTCGCCTGAATACATGACAGATTTTAGTTGCAGAGCGAGA 1251 Query 1219 AAGATCAAAATAGAATCTGCTGAATCAAGTCAGATCCAAGTAGCAGTGCGAATGACAACG 1278 |||| |||||||||||||||||||||||||||||||| |||||||| |||||| | | || Sbjct 1252 AAGAGCAAAATAGAATCTGCTGAATCAAGTCAGATCCGAGTAGCAGAGCGAAT-A-A-CG 1308 Query 1279 CCT-AATACAGCCATCGATGTTGTGAAACTGGGAGCTACACCAGAGGAAATGCTGGCTCT 1337 || || | ||| |||||| ||||||||||||||| |||| ||||||||||||||| ||| Sbjct 1309 ACTGAAAA-AGCTATCGATTTTGTGAAACTGGGAGTTACATCAGAGGAAATGCTGGATCT 1367 Query 1338 AATCCGTGCGGCTGCTCTCAATGCACAATATCCAAAAGACTATAATAGTACCTCATGTGA 1397 ||||||||| || |||||||||||||||||||||||||||||||||| |||||||||| Sbjct 1368 AATCCGTGCAGCGGCTCTCAATGCACAATATCCAAAAGACTATAATA---CCTCATGTGA 1424 Query 1398 CATGGTAAGAGAGTTTGTGTCCAATTATCGAAGCTTCAATAACAAGAGGAACCTTTCAGA 1457 ||||||||||||||||||||||| |||||||||||||||||||||||| ||| ||||||| Sbjct 1425 CATGGTAAGAGAGTTTGTGTCCACTTATCGAAGCTTCAATAACAAGAGAAACATTTCAGA 1484 Query 1458 TGTAGAGAAGCAGCCTGAAGT-GAA-AC-AGGAAATAGTGGATGAGAAA-GAGA--AAAC 1511 ||||||||||||||||||||| | | || ||| || | ||||| || | ||| Sbjct 1485 TGTAGAGAAGCAGCCTGAAGTAGTGGATGAG-AAAGAGCAAACCAGAAATGA-ACCAAAT 1542 Query 1512 CAGAA--A-TGAACCAGGTGTTGAGCTATATATCAAGACTGGTTTTGGTTCTACTCTGCC 1568 |||| | | | ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1543 GAGAAGCAATTTTC-AGGTGTTGAGCTATATATCAAGACTGGTTTTGGTTCTACTCTGCC 1601 Query 1569 TTCAAAAGATGATTTGATCAAAACATACGAAAAGTTTGGAGCTTTAGACAAAGAGAGAAG 1628 |||||||||||||||||| | | ||||||||||||||||||||| |||||||||||||| Sbjct 1602 TTCAAAAGATGATTTGATTGATATATACGAAAAGTTTGGAGCTTTGGACAAAGAGAGAAG 1661 Query 1629 CTATATGTTCAACAATAACTCATGCTCATGCGTTGCCTT-TGTGAATGCATCTGATGGAG 1687 |||||| ||| |||| ||||||||| || |||||||||| | | |||||||||||||||| Sbjct 1662 CTATATCTTCGACAACAACTCATGCGCACGCGTTGCCTTCT-TCAATGCATCTGATGGAG 1720 Query 1688 AAGAAGCTTTTAACAGGTCATTAGAGAAATGTCCATTTGCCACTACTTCCACAGTAACAT 1747 || |||| ||||||| ||| ||||||||||| |||||||| ||||||||||||||||||| Sbjct 1721 AACAAGCATTTAACAAGTCGTTAGAGAAATGCCCATTTGCTACTACTTCCACAGTAACAT 1780 Query 1748 TCAAGCTCGAGTATCCATCTTCTGCTTCATCTGAGAAGAAGGAAGCTGAAACAAGAAAGG 1807 |||||||| |||||||||||||||||||| |||| || | || || ||| | Sbjct 1781 TCAAGCTCAAGTATCCATCTTCTGCTTCACCTGA-AA-AT-----CTTAATGG-GAA-GA 1831 Query 1808 GCGTAACAGAAATCGAGTGTTTGAAAGAGAAGCTCGAGGGGATAAGAGCATTGTTAGATC 1867 || |||||||||||||||||||||||||| |||| ||||| | ||||| | || | Sbjct 1832 -CG-----GAAATCGAGTGTTTGAAAGAGAAGCTTGAGGAGATAAAATCATTGCTGGAAC 1885 Query 1868 AATCAGAGGGAAAGATTACGGAAGAATTGAAAATGAAACTTGAAGATGAA-TCAAGAAAC 1926 ||||||||||||||||||| ||||||||||| ||||||||||||||| || ||||||||| Sbjct 1886 AATCAGAGGGAAAGATTACAGAAGAATTGAAGATGAAACTTGAAGAT-AAGTCAAGAAAC 1944 Query 1927 TTGCTTGACAAGGTAAGGAAGATGATTATT 1956 |||||||||||||||||||||||||||||| Sbjct 1945 TTGCTTGACAAGGTAAGGAAGATGATTATT 1974 > Ahg922928 jgi|Araly1|922928|scaffold_104209.1 Length=786 Score = 351 bits (190), Expect = 8e-96 Identities = 282/325 (87%), Gaps = 12/325 (4%) Strand=Plus/Plus Query 396 GATGAGTGATTCGAGAAG-GTTTCTTCT-TGCTGTGGAAGATGCTGTGAGAGAGATTGGT 453 |||||||||||| | ||| |||||| | ||| |||||||| | |||||||||||| ||| Sbjct 25 GATGAGTGATTCTA-AAGCCTTTCTT-TGTGCCGTGGAAGAAGATGTGAGAGAGATCGGT 82 Query 454 GAGCATGTTGAG-AAGTTTTTGGTTTGTGATGACGCTGCTTTAGTTAGTTCTGTAGCTTT 512 || ||||||||| || |||||||||||||||||||| |||| ||||||||| ||||||| Sbjct 83 GAACATGTTGAGCAA-TTTTTGGTTTGTGATGACGCGGCTTCGGTTAGTTCTATAGCTTT 141 Query 513 GAATTTGGGGATTAAGGATGGTGTT-GTTGTGCCTGATGTTAGAAGAAAGATTATATCGT 571 ||||| ||||||| ||| ||| || | ||||||||||||||||||| |||||||||||| Sbjct 142 GAATTCGGGGATTCTGGAAGGTATTAG-TGTGCCTGATGTTAGAAGAGAGATTATATCGT 200 Query 572 CTTTGGTTCTTGAAAACCCCGGTGTTGTTCTTGAAGATGTTAAAAGACTTGCCATGACGG 631 |||||||||| ||||| | || ||||||||||||||||||||||||||||| | || || Sbjct 201 CTTTGGTTCTGGAAAATCATGGAGTTGTTCTTGAAGATGTTAAAAGACTTGCGAAGATGG 260 Query 632 TTAGATTT-GATGATTTGTTAGAGATTGAGGTTTTGAGGAGGAAGATATCG-GCGTTTTA 689 |||| ||| | ||||||||||||||||||| |||||| |||||| ||||| | |||||| Sbjct 261 TTAGTTTTAG-TGATTTGTTAGAGATTGAGTTTTTGAAGAGGAAAATATCTAG-GTTTTA 318 Query 690 TCGGTGTAAAGGAAGGTTTGATTTA 714 ||||||||| ||||||||||||||| Sbjct 319 TCGGTGTAATGGAAGGTTTGATTTA 343 Score = 276 bits (149), Expect = 5e-73 Identities = 357/449 (80%), Gaps = 47/449 (10%) Strand=Plus/Plus Query 784 TTGAGAAAGTGTTCAGGTTTTGCTAGCAAAAAGAGGAAATGTGGTGATGTAGC-AACCAC 842 |||| |||||||||||| |||||||| ||||||||||||| ||| ||| ||| || | Sbjct 350 TTGACAAAGTGTTCAGGGTTTGCTAGGAAAAAGAGGAAATTTGGCAATGAAGCTAATC-T 408 Query 843 TGGT--TCTA-CTA-CTTTGAGGAAGAAAAGACTGAGTGAAGTTTCGAAGATTGAAACCG 898 |||| | || | | | || | | | | ||| |||||||||||||||||| | Sbjct 409 TGGTGATGTAGCAACCACTG-GTTTTACTACTTTTAGTAAAGTTTCGAAGATTGAAAATG 467 Query 899 CTGAGAAAGAAATTAGTAACGGGAAGAGTTTGTCGTCGAGGAAGA-GAAAGAGCAAAAGG 957 || || ||||||||||||| |||||||||||||| |||||||||| |||| ||||||||| Sbjct 468 CTAAGGAAGAAATTAGTAATGGGAAGAGTTTGTCCTCGAGGAAGAGGAAA-AGCAAAAGG 526 Query 958 GGTTTGGATGAGAATGATGATGATGGGATTGAGAAAAGAGAAGAGTCGAACGACTCAAAC 1017 |||||| || | ||| ||||||||||||||| ||||||||||||||| || ||||||||| Sbjct 527 GGTTTGAATTATAATAATGATGATGGGATTGGGAAAAGAGAAGAGTCAAAGGACTCAAAC 586 Query 1018 CATTTAGAAGAGAGT--G-AG--A-A-GA---A---A--G--A-------TGATTTAGCA 1053 ||||||||||||||| | || | | || | | | | |||||||| | Sbjct 587 CATTTAGAAGAGAGTGAGAAGAAAGATGATTCATGTATCGAAATTGGTGTTGATTTAGGA 646 Query 1054 ACTCCATTGGCTTCAATCTGCAAAAGGCTCAATGTTGATGTTTCTTCATGTGTTAAAAGG 1113 |||||||||||||||||||||||||||||||| ||| ||||||||||| ||||||||||| Sbjct 647 ACTCCATTGGCTTCAATCTGCAAAAGGCTCAAGGTTTATGTTTCTTCAAGTGTTAAAAGG 706 Query 1114 TGTAATGGAAATGGCGAGGCAATATTGCAGACAGGTAAAAGAGAGAGGAAGAAAAGCAAG 1173 | ||||||||||||||| | ||| ||||||||||||||||||||||||| Sbjct 707 AGCAATGGAAATGGCGAG--A------CAGT----TAAAAGAGAGAGGAAGAAAAGCAAG 754 Query 1174 TATCTTTCTCCTGAATACATGACAGATTT 1202 |||||||| |||||||||||||||||| Sbjct 755 TATCTTTCA--TGAATACATGACAGATTT 781 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 73628443585 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5