BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G27865.1 Length=92 Score E Sequences producing significant alignments: (Bits) Value Ahg936555 jgi|Araly1|936555|scaffold_500746.1 132 4e-31 > Ahg936555 jgi|Araly1|936555|scaffold_500746.1 Length=190 Score = 132 bits (71), Expect = 4e-31 Identities = 84/90 (93%), Gaps = 2/90 (2%) Strand=Plus/Minus Query 4 GATGATG-ATCAATGCTTAATTTCTGACACCTCTTGTATGAGAAGAGCTTGATAACCTCT 62 ||||||| || |||||| |||||||||||||||||||||||| |||| |||||||||||| Sbjct 123 GATGATGAAT-AATGCTAAATTTCTGACACCTCTTGTATGAGGAGAGATTGATAACCTCT 65 Query 63 TCTTTGAGCACATTATGCAATACTCTGAGC 92 ||||||||||||||||||||||||||||| Sbjct 64 CCTTTGAGCACATTATGCAATACTCTGAGC 35 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 2675465310 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5