BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G27865.1

Length=92
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg936555 jgi|Araly1|936555|scaffold_500746.1                        132    4e-31


> Ahg936555 jgi|Araly1|936555|scaffold_500746.1
Length=190

 Score =  132 bits (71),  Expect = 4e-31
 Identities = 84/90 (93%), Gaps = 2/90 (2%)
 Strand=Plus/Minus

Query  4    GATGATG-ATCAATGCTTAATTTCTGACACCTCTTGTATGAGAAGAGCTTGATAACCTCT  62
            ||||||| || |||||| |||||||||||||||||||||||| |||| ||||||||||||
Sbjct  123  GATGATGAAT-AATGCTAAATTTCTGACACCTCTTGTATGAGGAGAGATTGATAACCTCT  65

Query  63   TCTTTGAGCACATTATGCAATACTCTGAGC  92
             |||||||||||||||||||||||||||||
Sbjct  64   CCTTTGAGCACATTATGCAATACTCTGAGC  35



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 2675465310


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5