BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G27870.1
Length=3587
Score E
Sequences producing significant alignments: (Bits) Value
Ahg484577 jgi|Araly1|484577|fgenesh2_kg.5__569__AT3G27870.1 3498 0.0
Ahg471476 jgi|Araly1|471476|fgenesh2_kg.1__1430__AT1G13210.1 289 1e-76
Ahg341522 jgi|Araly1|341522|fgenesh1_pg.C_scaffold_3001285 119 2e-25
> Ahg484577 jgi|Araly1|484577|fgenesh2_kg.5__569__AT3G27870.1
Length=3528
Score = 3498 bits (1894), Expect = 0.0
Identities = 2181/2318 (94%), Gaps = 25/2318 (1%)
Strand=Plus/Plus
Query 1 ATGGCTGGAGAGAGGAGAAAAGGGATGAAATTCAGTAAATTATATTCTTTCAAGTGTTTT 60
|||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct 1 ATGGCTGGAGAGAGGAGAAAAGGGATGAAATTTAGTAAATTATATTCTTTTAAGTGTTTA 60
Query 61 AAACCATTCTCTAGAGAAGATCATTCTCAGATTGGTTCAAGAGGTTACTCAAGAGTTGTG 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 AAACCATTCTCTAGAGAAGATCATTCTCAGATTGGTTCAAGAGGTTACTCAAGAGTTGTG 120
Query 121 TTCTGTAATGATCCTGATAATCCTGAAGCTCTTCAGCTTAATTACAGAGGAAATTATGTG 180
||||||||||| |||||||||||||| || |||||||||||||||||||| ||||||||
Sbjct 121 TTCTGTAATGACCCTGATAATCCTGAGGCACTTCAGCTTAATTACAGAGGGAATTATGTA 180
Query 181 TCAACCACTAAGTATACTGCTGCTAATTTCATCCCAAAGTCTTTGTTTGAGCAGTTTAGA 240
||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||
Sbjct 181 TCAACCACTAAGTATACTGCTGCTAGTTTCATCCCAAAGTCTTTGTTTGAGCAATTTAGA 240
Query 241 AGAGTTGCAAATATATATTTCCTCGTTGTTGCTTTCGTTTCTTTTAGTCCTTTGGCTCCT 300
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 241 AGAGTTGCAAATATATATTTCCTCGTTGTTGCTTTCGTTTCGTTTAGTCCTTTGGCTCCT 300
Query 301 TATACCGCTCCTAGCGTTCTTGCACCGCTCTTGATTGTTATCGGTGCTACCATGGTTAAA 360
|||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct 301 TATACCGCTCCTAGCGTTCTTGCACCGCTCTTGATTGTGATCGGTGCTACGATGGTTAAA 360
Query 361 GAAGGTGTTGAAGATTTGAGGAGAAGAAAACAAGATGTTGAAGCTAACAATAGGAAAGTT 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 GAAGGTGTTGAAGATTTGAGGAGAAGAAAACAAGATGTTGAAGCTAACAATAGGAAAGTT 420
Query 421 GAAGTTCTTGGTAAAACCGGAACATT-TGTCGAAACGAAGTGGAAAAATCTCCGTGTTGG 479
|||||||||||||||| |||||| || || |||||||||||||||||||||||| |||||
Sbjct 421 GAAGTTCTTGGTAAAAACGGAAC-TTATGGCGAAACGAAGTGGAAAAATCTCCGAGTTGG 479
Query 480 TGATCTTGTGAAGGTTCATAAAGATGAGTACTTCCCTGCTGATCTTCTACTGCTTTCATC 539
|||||||||||||||||||||||||||||| || || ||||||||||| |||||||||||
Sbjct 480 TGATCTTGTGAAGGTTCATAAAGATGAGTATTTTCCAGCTGATCTTCTTCTGCTTTCATC 539
Query 540 TAGCTATGAAGATGGGATTTGTTATGTTGAAACTATGAATCTTGATGGAGAGACTAACTT 599
||| ||||||||||||||||||||||||||||| |||||||||||||| |||||||| ||
Sbjct 540 TAGTTATGAAGATGGGATTTGTTATGTTGAAACAATGAATCTTGATGGGGAGACTAATTT 599
Query 600 GAAGCTTAAGCACGCGTTGGAGATAACATCGGACGAAGAATCGATCAAGAACTTCAGAGG 659
|||||| ||||||||||||||||| |||||||| ||||| ||||||||||||||||| ||
Sbjct 600 GAAGCTAAAGCACGCGTTGGAGATCACATCGGATGAAGAGTCGATCAAGAACTTCAG-GG 658
Query 660 -AATGATCAAATGTGAGGATCCTAATGAGCATCTTTATTCCTTTGTGGGAACACTTTACT 718
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 659 CGGTGATCAAATGTGAGGATCCTAATGAGCATCTTTATTCTTTTGTGGGAACACTTTACT 718
Query 719 TTGAAGGAAAGCAATATCCTTTATCTCCTCAGCAGATACTATTGAGAGATTCCAAACTGA 778
|||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct 719 TTGAAGGAAAGCAATATCCTTTATCTCCTCAGCAGATACTATTGAGGGATTCTAAACTGA 778
Query 779 AAAATACGGATTATGTATACGGCGTGGTTGTTTTTACCGGTCATGACACTAAAGTGATGC 838
|||||||||||||||| |||||||||||||||||||| ||||||||||| ||||||||||
Sbjct 779 AAAATACGGATTATGTTTACGGCGTGGTTGTTTTTACGGGTCATGACACGAAAGTGATGC 838
Query 839 AGAATGCTACCGATCCTCCTTCTAAGAGGAGTAAGATTGAGaaaaaaaTGGATCAGATTA 898
|||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 839 AGAATGCTACTGATCCTCCTTCTAAGAGGAGCAAGATTGAGAAAAAAATGGATCAGATTA 898
Query 899 TTTACATTCTCTTCAGTATCTTGATTGTGATAGCGTTTACTGGATCTGTATTCTTCGGGA 958
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
Sbjct 899 TTTACATTCTCTTCAGTATCTTGATTGTGATAGCGTTTACTGGATCTGTGTTCTTCGGTA 958
Query 959 TTGCAACGAGAAGGGATATGAGTGATAATGGGAAGCTAAGAAGATGGTATCTTAGACCAG 1018
||| ||||||||| |||||||||||| |||||||| |||||||||||||||||||||| |
Sbjct 959 TTGTAACGAGAAGAGATATGAGTGATGATGGGAAGTTAAGAAGATGGTATCTTAGACCTG 1018
Query 1019 ATCATACTACTGTTTTCTATGATCCTCGGAGAGCGGTTGCTGCTGCTTTCTTTCATTTCT 1078
|||| |||||||||||||||||||| ||||||||||||||||||| ||||||||||||||
Sbjct 1019 ATCAGACTACTGTTTTCTATGATCCGCGGAGAGCGGTTGCTGCTGGTTTCTTTCATTTCT 1078
Query 1079 TGACCGCTTTAATGCTATACGGTTACTTAATACCGATATCTTTATATGTGTCTATTGAAG 1138
|||| ||| ||||||||||||||||||||||||| ||||| || || ||||||||||| |
Sbjct 1079 TGACAGCTCTAATGCTATACGGTTACTTAATACCTATATCGTTGTACGTGTCTATTGAGG 1138
Query 1139 TTGTGAAGGTGTTACAGAGTATTTTCATTAACCAAGATCAAGAAATGTACCATGAAGAAA 1198
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1139 TTGTGAAGGTGTTACAGAGTATTTTCATTAACCAAGATCAAGAAATGTACCATGAGGAAA 1198
Query 1199 CAGATAGGCCTGCTCGTGCAAGAACGTCGAATCTTAATGAAGAGCTTGGACAAGTTGATA 1258
|||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||
Sbjct 1199 CAGATAGGCCTGCTCGTGCAAGAACGTCTAATCTTAATGAAGAACTTGGACAAGTTGATA 1258
Query 1259 CAATTCTCTCGGATAAAACAGGTACTTTGACTTGCAACTCAATGGAGTTTGTGAAATGTT 1318
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1259 CAATTCTCTCGGATAAAACAGGTACTTTGACTTGCAACTCAATGGAGTTTGTGAAATGTT 1318
Query 1319 CGATTGCTGGAACAGCTTATGGTCGCGGTATGACCGAAGTAGAAGTGGCTTTGAGAAAGC 1378
||||||||||||| ||||||||||| |||||||| ||||||||| |||| ||||| |||
Sbjct 1319 CGATTGCTGGAACCGCTTATGGTCGTGGTATGACGGAAGTAGAAATGGCCTTGAGGAAGA 1378
Query 1379 AAAAGGGTCTTATGACTCAAGAAGAAGTTGGTGATAATGAATCTTTATCCATTAAGGAGC 1438
||||||| | | |||||||||||||||||||| || |||||||||||||||||||
Sbjct 1379 AAAAGGGAATGGTCCCTCAAGAAGAAGTTGGTGATGAT---TCTTTATCCATTAAGGAGC 1435
Query 1439 AAAAAGCGGTTAAAGGTTTTAACTTCTGGGATGAGAGAATAGTTGATGGACAATGGATTA 1498
||||| |||||||||||||||| |||||||||||||||||||| | || ||||||||||
Sbjct 1436 AAAAATCGGTTAAAGGTTTTAATTTCTGGGATGAGAGAATAGTCAACGGGCAATGGATTA 1495
Query 1499 ATCAACCAAATGCAGAACTTATTCAGAAGTTCTTTCGTGTGTTGGCTATTTGCCACACTG 1558
||||||| |||||||||| ||||||||||||||||| || |||||||||||||||||||
Sbjct 1496 ATCAACCGCATGCAGAACTCATTCAGAAGTTCTTTCGGGTATTGGCTATTTGCCACACTG 1555
Query 1559 CTATTCCTGATGTTAACAGCGATACAGGAGAGATCACATATGAAGCTGAGTCTCCGGATG 1618
||||||||||||| || | || |||||||||||||||||||||||||||||||||||||
Sbjct 1556 CTATTCCTGATGTGAATAATGAAACAGGAGAGATCACATATGAAGCTGAGTCTCCGGATG 1615
Query 1619 AAGCGGCTTTTGTTATAGCTTCTCGAGAGCTTGGATTTGAATTCTTTTCAAGGTCCCAAA 1678
||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1616 AAGCGGCTTTTGTCATAGCTTCTCGAGAGCTTGGATTTGAATTCTTTTCAAGGTCTCAAA 1675
Query 1679 CTAGTATTTCCTTGCATGAAATAGACCACATGACCGGTGAAAAAGTTGATAGAGTATATG 1738
|||||||||||||||||||||| ||||||||||||| | | | || |||
Sbjct 1676 CTAGTATTTCCTTGCATGAAATTGACCACATGACCG-T-A-----T--AT-GAG------ 1719
Query 1739 AGCTTCTTCATGTCCTAGAGTTCAGCAGTTCACGGAAAAGAATGTCGGTGATTGTCCGAA 1798
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1720 --CTTCTTCATGTCCTAGAGTTCAGCAGTTCACGGAAAAGAATGTCGGTGATTGTTCGAA 1777
Query 1799 ATCCCGAAAACCGGTTGTTGTTGCTTTCGAAAGGCGCAGACAGTGTAATGTTTAAAAGAC 1858
|||||||||||||||||||||| ||||| |||||||||||||||||||||||| ||||||
Sbjct 1778 ATCCCGAAAACCGGTTGTTGTTACTTTCAAAAGGCGCAGACAGTGTAATGTTTGAAAGAC 1837
Query 1859 TTGCGAAACATGGACGGCAAAATGAGAGAGAGACAAAGGAACATATCAAGAAGTATGCAG 1918
|||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1838 TTGCGAAACACGGACGGCAAAATGAGAGAGAGACAAAGGAACACATCAAGAAGTATGCAG 1897
Query 1919 AGGCGGGTTTAAGAACATTAGTGATTACATATAGAGAAATCGATGAAGACGAGTACATAG 1978
|||| |||||||||||||| ||||||||||| ||||||||||||||||||||||||| |
Sbjct 1898 AGGCAGGTTTAAGAACATTGGTGATTACATACAGAGAAATCGATGAAGACGAGTACAGAA 1957
Query 1979 TGTGGGAAGAGGAGTTTCTGAATGCCAAAACTTTGGTTACTGAAGATAGAGATGCTTTAA 2038
| |||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||
Sbjct 1958 TATGGGAAGAGGAGTTTCTGAATGCCAAGGCTTTGGTCACTGAAGATAGAGATGCTTTAA 2017
Query 2039 TTGATGCAGCTGCTGATAAGATTGAGAAAGATTTGATTCTTCTTGGTTCTACTGCAGTGG 2098
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2018 TTGATGCAGCTGCTGATAAGATTGAGAAAGATTTGATTCTTCTTGGTTCTACTGCAGTGG 2077
Query 2099 AAGACAAACTGCAGAAAGGTGTTCCAGATTGTATTGAGAAGTTATCTCAGGCTGGAGTCA 2158
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2078 AAGACAAACTCCAGAAAGGTGTTCCAGATTGTATTGAGAAGTTATCTCAGGCTGGAGTCA 2137
Query 2159 AGATTTGGGTTTTAACCGGCGATAAGACAGAAACCGCGATAAATATCGGATATGCTTGTA 2218
|||| ||||||||||||||||||||||||||||| |||||||||||||| ||||||||||
Sbjct 2138 AGATATGGGTTTTAACCGGCGATAAGACAGAAACTGCGATAAATATCGGGTATGCTTGTA 2197
Query 2219 GTCTCTTAAGAGAAGGCATGAAACAGATTTTGGTAACTCTAGATTCATCTGACATTGAAG 2278
||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct 2198 GTCTCTTAAGAGAAGGCATGAAAAAGATTTTGATAACTCTAGATTCATCTGACATTGAAG 2257
Query 2279 CATTGGAAAAACAAGGAGACAAGGAGGCTGTTGCAAAG 2316
||||||||||||||||||||||||||||||||||||||
Sbjct 2258 CATTGGAAAAACAAGGAGACAAGGAGGCTGTTGCAAAG 2295
Score = 1910 bits (1034), Expect = 0.0
Identities = 1169/1236 (95%), Gaps = 2/1236 (0%)
Strand=Plus/Plus
Query 2342 AGTTACGAGAAGGAATGTCACAAACTGCTGCAGTAACCGATAATTCAGCTAAAGAAAACT 2401
||||||||||||||||| ||||||||||||||||||| ||| |||||| ||||||||| |
Sbjct 2294 AGTTACGAGAAGGAATGACACAAACTGCTGCAGTAACGGATGATTCAGTTAAAGAAAA-T 2352
Query 2402 -CGGAAATGTTTGGTTTAGTGATTGATGGAAAGTCTTTAACTTATGCATTGGACTCAAAG 2460
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 2353 CCGGAAATGTTTGGTTTAGTGATTGATGGAAAGTCTTTAACTTTTGCATTGGACTCAAAG 2412
Query 2461 CTGGAGAAAGAGTTCTTGGAACTTGCGATTCGATGTAATTCTGTTATATGTTGTCGGTCT 2520
||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||
Sbjct 2413 CTGGAGAAAGAGTTCTTAGAACTTGCGATTCGATGTAATTCTGTTATATGTTGCCGGTCT 2472
Query 2521 TCGCCAAAACAAAAGGCGCTCGTTACAAGATTGGTAAAGAATGGGACAGGTAGAACAACA 2580
||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||
Sbjct 2473 TCGCCAAAACAAAAGGCTCTCGTTACAAGATTGGTAAAGAACGGGACAGGTAGAACAACA 2532
Query 2581 CTGGCCATTGGAGATGGCGCAAATGATGTTGGAATGCTTCAAGAAGCCGATATTGGAGTT 2640
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2533 CTGGCTATTGGAGATGGCGCAAATGATGTTGGAATGCTTCAAGAAGCCGATATTGGAGTG 2592
Query 2641 GGTATAAGTGGTGCTGAAGGAATGCAGGCGGTGATGGCTAGTGATTTTGCGATTGCTCAG 2700
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 2593 GGTATAAGTGGTGCTGAAGGAATGCAGGCAGTGATGGCTAGTGATTTTGCGATTGCTCAG 2652
Query 2701 TTTCGGTTTCTGGAACGTTTATTACTTGTTCACGGTCATTGGTGTTATAGACGAATCACA 2760
||||||||||||||||||||||| |||||||| |||||||||||||||||| ||||| ||
Sbjct 2653 TTTCGGTTTCTGGAACGTTTATTGCTTGTTCATGGTCATTGGTGTTATAGAAGAATCGCA 2712
Query 2761 TTGATGATATGTTACTTCTTCTACAAGAACCTCGCATTCGGGTTCACGCTGTTTTGGTAT 2820
||||||||||| ||||||||||||||||||||| | |||||||||||||||||||||||
Sbjct 2713 TTGATGATATGCTACTTCTTCTACAAGAACCTCACGTTCGGGTTCACGCTGTTTTGGTAC 2772
Query 2821 GAAGCTTATGCTTCTTTCTCTGGAAAACCGGCGTATAACGATTGGTACATGTCGTGCTAC 2880
|||||||||||||||||||||||||||||||| ||||| |||||||| ||||||||||||
Sbjct 2773 GAAGCTTATGCTTCTTTCTCTGGAAAACCGGCTTATAATGATTGGTATATGTCGTGCTAC 2832
Query 2881 AACGTCTTCTTCACTTCACTTCCTGTTATCGCCCTTGGAGTCTTCGATCAAGACGTCTCT 2940
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 2833 AACGTCTTCTTCACTTCACTTCCTGTCATCGCCCTTGGAGTCTTCGATCAAGACGTCTCT 2892
Query 2941 GCTCGCCTTTGTCTCAAGTATCCGTTGCTATACCAAGAAGGAGTACAAAACGTATTATTC 3000
|||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct 2893 GCTCGCCTTTGTCTCAAGTATCCGTTACTGTACCAAGAAGGAGTACAAAACGTATTATTC 2952
Query 3001 AGCTGGGAACGGATCCTAGGATGGATGTTGAATGGAGTCATAAGCTCAATGATCATTTTC 3060
||||||||||||||||| |||||||||||||||||| |||||||||||||||| ||||||
Sbjct 2953 AGCTGGGAACGGATCCTCGGATGGATGTTGAATGGAATCATAAGCTCAATGATTATTTTC 3012
Query 3061 TTCCTCACTATCAACACAATGGCAACTCAAGCTTTTAGGAAAGATGGACAAGTAGTTGAT 3120
|||||||| ||||||||||||||| |||||||||| |||| ||||| ||||||||||||
Sbjct 3013 TTCCTCACAATCAACACAATGGCAGCTCAAGCTTTCCGGAAGGATGGCCAAGTAGTTGAT 3072
Query 3121 TACTCGGTCCTCGGAGTCACAATGTACTCTTCCGTGGTCTGGACTGTGAATTGCCAAATG 3180
|||||||| || |||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 3073 TACTCGGTTCTTGGAGTCACAATGTACTCTTCCGTGGTCTGGACGGTGAATTGCCAAATG 3132
Query 3181 GCGATTTCGATAAACTACTTCACTTGGATCCAACATTGCTTCATATGGGGAAGCATTGGG 3240
||||||||||||||||||||||||||||| ||||||||||| || ||||||||||| |||
Sbjct 3133 GCGATTTCGATAAACTACTTCACTTGGATACAACATTGCTTTATCTGGGGAAGCATCGGG 3192
Query 3241 GTTTGGTATTTGTTTCTTGTCATCTACGGTTCCCTTCCTCCGACGTTTTCCACTACCGCG 3300
||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct 3193 GTTTGGTATTTGTTTCTTGTCATCTACGGTTCCCTTCCTCCAACGTTTTCCACAACCGCA 3252
Query 3301 TTTCAGGTCTTCGTCGAGACTTCAGCACCGAGTCCGATCTATTGGCTCGTTCTTTTCCTT 3360
|||||||||||||||||||| ||||| |||||||| |||| ||||||| ||||||||||
Sbjct 3253 TTTCAGGTCTTCGTCGAGACATCAGCGCCGAGTCCAATCTGTTGGCTCATTCTTTTCCTC 3312
Query 3361 GTGGTGTTCTCTGCTCTCTTGCCTTATTTCACTTACAGGGCGTTTCAGATTAAGTTCAGA 3420
||||||||||||||||||||||| |||||| |||||||||| |||||||||||||| |||
Sbjct 3313 GTGGTGTTCTCTGCTCTCTTGCCGTATTTCGCTTACAGGGCATTTCAGATTAAGTTTAGA 3372
Query 3421 CCAATGTACCACGATATTATTGTTGAACAGAGGAGAACAGAACGGACAGAGACCGCGCCA 3480
|| |||||||||||||| |||||||||||||||||||||||||||| |||||| || ||
Sbjct 3373 CCGATGTACCACGATATCATTGTTGAACAGAGGAGAACAGAACGGATAGAGACTGCACCG 3432
Query 3481 AATGCGGTTCTTGGTGAGCTTCCGGTGCAAGTTGAGTTTACTTTGCATCATCTTAGGGCA 3540
| ||||||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3433 AGTGCGGTTCTAGGCGAGCTTCCGGTGCAAGTTGAGTTTACTTTGCATCATCTTAGGGCA 3492
Query 3541 AATTTGTCTAGAAGAGATTCTTGGAATTGATTCGTA 3576
|||||||||||||||||||| |||||||||||||||
Sbjct 3493 AATTTGTCTAGAAGAGATTCATGGAATTGATTCGTA 3528
> Ahg471476 jgi|Araly1|471476|fgenesh2_kg.1__1430__AT1G13210.1
Length=3834
Score = 289 bits (156), Expect = 1e-76
Identities = 447/584 (77%), Gaps = 34/584 (6%)
Strand=Plus/Plus
Query 2500 TCTGTTATATGTTGTC-GGTCTTCGCCAAAACAAAAGGCGCTCGTTACAAGATTGGT-AA 2557
|||||||| || || | | || || || |||||||||||| | ||||| | ||||| ||
Sbjct 2567 TCTGTTATTTGCTG-CAGATCATCTCCTAAACAAAAGGCGTTGGTTACGCGGTTGGTCAA 2625
Query 2558 AGAATGGGA-CAGGTAGAACAACACTGGCCATTGGAGATGGCGCAAATGATGTTGGAATG 2616
| ||| | | || || ||||| | || ||||||||||| ||||||||||||||||||
Sbjct 2626 A-TCTGGAACCGGGAAG-ACAACTTTAGCGATTGGAGATGGAGCAAATGATGTTGGAATG 2683
Query 2617 CTTCAAGAAGCCGATATTGGAGTTGGTATAAGTGGTGCTGAAGGAATGCAGGCGGTGATG 2676
||||||||||| ||||| || ||||| || || |||| ||| |||||||| ||||| |||
Sbjct 2684 CTTCAAGAAGCGGATATCGGTGTTGGAATCAGCGGTGTTGAGGGAATGCAAGCGGTTATG 2743
Query 2677 GCTAGTGATTTTGCGATTGCTCAGTTTCGGTTTC-TGGAACGTTTATTACTTGTTCACGG 2735
|||| ||| | || |||||||| || || || | | || || | || || || || ||
Sbjct 2744 TCTAGCGATATAGCCATTGCTCAATTCCG-TTACCTAGAGCGCCTCTTGCTCGTCCATGG 2802
Query 2736 TCATTGGTGTTATAG-ACGAATCACATTGATGATATGTTACTTCTTCTACAAGAACCTCG 2794
||| ||||| || || | ||||| ||| |||||||||||||||||||||||||| ||
Sbjct 2803 TCACTGGTGCTACAGCA-GAATCTCATCAATGATATGTTACTTCTTCTACAAGAATATCA 2861
Query 2795 CATTCGG-GTTCAC-GCTGTT-TTGGTATGAAGCTTATGCTTCTTTCTCTGGAAAACCGG 2851
| || || || ||| | |||| || || ||||| || | || ||||||| |||| |
Sbjct 2862 CTTTTGGTGT-CACCG-TGTTCTTA-TACGAAGCCTACACATCCTTCTCTGCTCAACCTG 2918
Query 2852 CGTATAACGATTGGTACATGTCG-TGCTACAACGTCTTCTTCACTTCACTTCCTGTTATC 2910
| ||||| || |||| | | ||| | | |||||| |||||| |||||||||| || ||
Sbjct 2919 CATATAATGACTGGTTCTTATCGCTTTT-CAACGTTTTCTTCTCTTCACTTCCAGTCATT 2977
Query 2911 GCCCTTGGAGTCTTCGATCAAGACGTCTCTGCTCGCCTT--TGTC-TCAAGTATCC-GTT 2966
|| || ||||| || |||||||||||||| ||||| || ||| | |||| ||| |||
Sbjct 2978 GCTCTCGGAGTTTTTGATCAAGACGTCTCAGCTCG--TTACTGTTAT-AAGT-TCCCGTT 3033
Query 2967 GCTATACCAAGAAGGAGTACAAAA-CGTATTATTCAGCTGGGAACG-GA-TCCTAGGATG 3023
|||||||||||||||||| ||||| | | | ||||||||| || | || || | |||||
Sbjct 3034 GCTATACCAAGAAGGAGTTCAAAATCTTCTC-TTCAGCTGG-AA-GAGAATCATCGGATG 3090
Query 3024 GATGTTGAATGGAGTCATAAGCTCAAT-GATCATTTTCTTCCTC 3066
|||||| || |||||| | | | || | | | ||||||||||||
Sbjct 3091 GATGTTCAACGGAGTCTTCACCGCACTAGCT-ATTTTCTTCCTC 3133
> Ahg341522 jgi|Araly1|341522|fgenesh1_pg.C_scaffold_3001285
Length=3732
Score = 119 bits (64), Expect = 2e-25
Identities = 154/198 (78%), Gaps = 4/198 (2%)
Strand=Plus/Plus
Query 2051 CTGATAAGATTGAGAAAGATTTGATTCTTCTTGGTTCTACTGCAGTGGAAGACAAACTGC 2110
|||||| ||| ||||| || ||||||||| | ||| ||||||||||||||||||||||||
Sbjct 2150 CTGATATGATGGAGAAGGAATTGATTCTTGTCGGTGCTACTGCAGTGGAAGACAAACTGC 2209
Query 2111 AGAAAGGTGTTCCAGATTGTATTGAGAAG-TTATCTCAGGCTGGAGTCAAGATTTGGGTT 2169
||||||| ||||| | || || || || || | || ||||| | ||||| ||||||
Sbjct 2210 AGAAAGGGGTTCCTCAATGCATAGATAAACTTGCC-CAAGCTGGTCTTAAGATATGGGTT 2268
Query 2170 TTAACCGGCGATAAGACAGAAACCGCGATAAATATCGGATATGCTTGTAGTCT-CTTAAG 2228
|| || || ||||||| || || ||||| || || |||||||| || ||| | || | |
Sbjct 2269 TTGACAGGAGATAAGATGGAGACAGCGATTAACATAGGATATGCCTGCAGTTTGCTGA-G 2327
Query 2229 AGAAGGCATGAAACAGAT 2246
| | || ||||| |||||
Sbjct 2328 ACAGGGTATGAAGCAGAT 2345
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 135484959880
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5