BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G27880.1
Length=1225
Score E
Sequences producing significant alignments: (Bits) Value
Ahg484578 jgi|Araly1|484578|fgenesh2_kg.5__570__AT3G27880.1 808 0.0
> Ahg484578 jgi|Araly1|484578|fgenesh2_kg.5__570__AT3G27880.1
Length=1082
Score = 808 bits (437), Expect = 0.0
Identities = 656/753 (87%), Gaps = 49/753 (7%)
Strand=Plus/Plus
Query 204 AAAAATCTGATCCAATGGAGAAAGAC---G-A--T-G--C--A-ACGGCGTCGTTTTCAC 251
|||||||||||||||||||||||||| | | | | | | ||||||||||||||||
Sbjct 119 AAAAATCTGATCCAATGGAGAAAGACGATGAATCTAGTCCTTACACGGCGTCGTTTTCAC 178
Query 252 CTAGCTTCAGTACTTATTCCGGCGATAGACTCGTCGAAATCGCCGAACGAGTCTGTTACA 311
||||||||||||||||||| |||||| ||||||| |||||||||||| |||| |||||||
Sbjct 179 CTAGCTTCAGTACTTATTCTGGCGATCGACTCGTAGAAATCGCCGAAAGAGTTTGTTACA 238
Query 312 AAGAGAAATCAGACGCCGAATTCGAGTTTTCGACGGCGGC-GACTTCTTCTTCCGGTGAC 370
||||||||||||| | ||| ||||||||| | | | || | || ||||||||||| ||
Sbjct 239 AAGAGAAATCAGATGACGAGTTCGAGTTTGCAATGACGACAGA-GTCTTCTTCCGGCAAC 297
Query 371 GGTGGACTAGTTTTCCCTGTATTTAACAAGAATCTAATCTCCGGAGA--TGTTTCTCCG- 427
|||||||||||||||||||| ||||||||||||||||||||| || | |||||
Sbjct 298 GGTGGACTAGTTTTCCCTGTTTTTAACAAGAATCTAATCTCC-GAAACCAAAACCTCCGC 356
Query 428 -G-AGAA-A----G-T--AATTCCGTTGAAGGATCTATTCCTCCGTGAACGTAACGATCA 477
| ||| | | | ||||||||||||||||||||||||||||||||||||||||
Sbjct 357 CGTGGAAGAGGCGGTTACAATTCCGTTGAAGGATCTATTCCTCCGTGAACGTAACGAT-- 414
Query 478 ACAACCACCGCAACAAACATACTCATCGTCTTCCGACGAAGAAGAAGAAGACGACGAGTT 537
| |||||||||||||||||| |||||||||||||||||||| ||||||||||| |||||
Sbjct 415 -CTACCACCGCAACAAACATATTCATCGTCTTCCGACGAAGACGAAGAAGACGATGAGTT 473
Query 538 TGATTCGATCCCGAGCGAGATCTATTGTCCATGGACACCAGCGAGATCTACGGCGGATAT 597
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 474 TGATTCGATCCCAAGCGAGATCTATTGTCCATGGACACCAGCGAGATCTACGGCGGAGAT 533
Query 598 GTCACCAAGTGGAGGATGTAGAAAAAGCAAATCTACAGGATCATCATCAACCTCTA-CAT 656
|||||||||||| || ||||||||||| ||||||||||||||||| |||||||| | |||
Sbjct 534 GTCACCAAGTGGTGGTTGTAGAAAAAGTAAATCTACAGGATCATCTTCAACCTC-ATCAT 592
Query 657 GGTCAACGAAACGATGGCGTTTGAGAGACTTTCTCAAGAGAAGTAAAAGTGATGGTAAAC 716
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 593 GGTCAACGAAACGATGGCGTTTGAGAGACTTTCTCAAGAGAAGTAAAAGTGATGGTAAAC 652
Query 717 AATCACTTAAATTCTTGAACCCAACAAAC---AG-AG-ATGATGATGATGAATCTTCCAA 771
||||||||||||||||||| ||||||||| | | | || ||||||||||||||
Sbjct 653 AATCACTTAAATTCTTGAATCCAACAAACTCCATTAACA-GA-GATGATGAATCTTCT-- 708
Query 772 ATCGAAGAAGAAAGTTTCAGTTTCAGTTACAGTTTCTGCACATGAGAAGTTTTATCTGAG 831
||||||||||| | || |||| |||||||||||||||||||||||||| ||||
Sbjct 709 -TCGAAGAAGAAGG----AGAA--AGTTTCAGTTTCTGCACATGAGAAGTTTTATTTGAG 761
Query 832 GAATAAAGCGATTAAAGAAGAAGACAAGAGAAAGTCATATTTACCGTACAAGCAAGATCT 891
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 762 GAATAAAGCGATTAAAGAAGAAGACAAGAGAAAATCATATTTACCGTACAAGCAAGATCT 821
Query 892 TGTTGGTCTTTTTTCTAATATTCATCGTTATGG 924
|||||| |||||||| |||||| |||||| |||
Sbjct 822 TGTTGGACTTTTTTCCAATATTAATCGTTTTGG 854
Score = 159 bits (86), Expect = 3e-38
Identities = 114/126 (90%), Gaps = 8/126 (6%)
Strand=Plus/Plus
Query 42 TTAATTACCAAAATTGCCATTTCCATGTGCCCCCAACCACTTCCTCCTATATATACGGCT 101
||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1 TTAATTACCAATATTGCCATTTCCATGTG-CCCCAACCACTTCCTCCTATATATACGGCT 59
Query 102 ATTTATACAACAAGACaaaaaaaaaaaaactccattaaagcaaaaaactccaaaaCCTCT 161
||||| |||||||||||||||| | ||||||||||||| || |||||||||||||
Sbjct 60 ATTTACACAACAAGACAAAAAACA-----CTCCATTAAAGCACAA--CTCCAAAACCTCT 112
Query 162 CTCTCT 167
||||||
Sbjct 113 CTCTCT 118
Score = 158 bits (85), Expect = 1e-37
Identities = 126/144 (88%), Gaps = 9/144 (6%)
Strand=Plus/Plus
Query 955 TTTGGATCTATTCGGTGAAAATTATGATTTTAAATTCGTATTTAATAAATTATGTAAGAT 1014
||||||||||||||||| | ||||||| |||||||||||||||||||| |||||
Sbjct 850 TTTGGATCTATTCGGTG------ACGATTTTATATTCGTATTTAATAAATTATAAAAGAT 903
Query 1015 GTAGATTTGTATTTTTAATAATTACATCTTAAATTATGTTTTTATTAGTTTGTAAACAAT 1074
|||||| ||||||||||||||||||||||||||||||||||||| ||||||| |||||
Sbjct 904 GTAGATGTGTATTTTTAATAATTACATCTTAAATTATGTTTTTA---GTTTGTACACAAT 960
Query 1075 TTTGATTATTTTCGTAATCATATA 1098
|||||| ||||| ||||||||||
Sbjct 961 TTTGATCATTTTAATAATCATATA 984
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45747500400
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5