BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G27884.1

Length=738
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg355403 jgi|Araly1|355403|fgenesh1_pg.C_scaffold_7002576           171    9e-42
  Ahg936558 jgi|Araly1|936558|scaffold_500749.1                        143    2e-33


> Ahg355403 jgi|Araly1|355403|fgenesh1_pg.C_scaffold_7002576
Length=351

 Score =  171 bits (92),  Expect = 9e-42
 Identities = 163/196 (83%), Gaps = 9/196 (5%)
 Strand=Plus/Plus

Query  114  ATGGCGATCTCTCACGTTCATCTTTTTCTTCTCCTCATCCTATCACTCTTCTTATTACCT  173
            |||||||||||| |||  |||||| |||||||||||||||||||  ||||||  || |||
Sbjct  1    ATGGCGATCTCTTACGGCCATCTTCTTCTTCTCCTCATCCTATCTTTCTTCTGGTTGCCT  60

Query  174  ACTTTGCGGGCCAT-CGATT-ATTCTGACTGCGGTGATGTAAGTTCTCCTGTTGAAGTCA  231
            | ||||| |||||| |  || |  | ||||| ||||||| ||||||||||||||||||||
Sbjct  61   AATTTGCTGGCCATCCCTTTCA-GC-GACTGTGGTGATGGAAGTTCTCCTGTTGAAGTCA  118

Query  232  CTAGTGTGGAGGAGATACTT-AAGGATAAGGACAAGGCAAGCTTTAAAATATCCGGTTCA  290
            ||||||||||  |  ||| | ||| |||||| || |||||||||| | ||||||||||| 
Sbjct  119  CTAGTGTGGAT-A--TACGTGAAG-ATAAGGGCATGGCAAGCTTTCAGATATCCGGTTCT  174

Query  291  ACAAGTAAAAATATCA  306
            |||||||||| |||||
Sbjct  175  ACAAGTAAAAGTATCA  190


> Ahg936558 jgi|Araly1|936558|scaffold_500749.1
Length=419

 Score =  143 bits (77),  Expect = 2e-33
 Identities = 135/163 (83%), Gaps = 3/163 (2%)
 Strand=Plus/Plus

Query  295  GTAAAAATATCACTGGAGGAGATATTTACGTGGATGTTA-AAGAGGCCTGATTCGTTACT  353
            ||||||||||||||||||||| | |||| |||||||||| || || | ||| || ||  |
Sbjct  112  GTAAAAATATCACTGGAGGAGTTTTTTATGTGGATGTTATAATAGACATGACTCATTTGT  171

Query  354  CTACT-AGCAACTACGACTTATGTGCATGTATGGCATGCCCTGTTGCACCTGGTGCCTTC  412
            ||| | |  || |||||||||||| ||| ||||||||||||| |||||||||||||||||
Sbjct  172  CTAATTATAAA-TACGACTTATGTACATATATGGCATGCCCTATTGCACCTGGTGCCTTC  230

Query  413  GTGCTTCCCCTAGACAATCTTTTTCGTTCATATCCAATGGTGA  455
            ||||||||||| |||||| |  ||| ||  |||||| || |||
Sbjct  231  GTGCTTCCCCTTGACAATATCATTCCTTTTTATCCACTGTTGA  273



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 27181639821


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5