BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G27890.1
Length=837
Score E
Sequences producing significant alignments: (Bits) Value
Ahg484579 jgi|Araly1|484579|fgenesh2_kg.5__571__AT3G27890.1 1048 0.0
> Ahg484579 jgi|Araly1|484579|fgenesh2_kg.5__571__AT3G27890.1
Length=751
Score = 1048 bits (567), Expect = 0.0
Identities = 697/758 (92%), Gaps = 16/758 (2%)
Strand=Plus/Plus
Query 18 TTTATGTATTCCTTCACCTAA--TCTCTCATCCTTTCTTCATCGGTCAACATTTTCTCAA 75
||| ||||||||||||||||| |||||||||| ||||| ||||||||||| ||||||||
Sbjct 1 TTTGTGTATTCCTTCACCTAATCTCTCTCATCC-TTCTTTATCGGTCAACACTTTCTCAA 59
Query 76 ACTCTCTCTAATCCA-TAAAAATGGAAGCAGTAACGGCGATTAAGCCACTT-ATCAGAGT 133
| ||||||||| || ||||||||||||||||||||||||||||||| || || |||||
Sbjct 60 A--CTCTCTAAT-CAGAAAAAATGGAAGCAGTAACGGCGATTAAGCCA-TTAATTAGAGT 115
Query 134 CGCTGCTCTCTCTGGTTCTCTCCGGAAAACCTCCTTCCATACTGGTCTCCTCCGCGCTGC 193
|||||||||||| ||||| ||||| |||||||| ||| | |||||||||||||| || ||
Sbjct 116 CGCTGCTCTCTCCGGTTCCCTCCGTAAAACCTCTTTCAACACTGGTCTCCTCCGTGCAGC 175
Query 194 GATTGATTTGACGAAAGAATCGGTTCCGGG-ATTGCAAATTGAGTATATAGATATATCAC 252
|||||||||||||||||||||||||||||| ||| |||||||||||||| |||||||| |
Sbjct 176 GATTGATTTGACGAAAGAATCGGTTCCGGGAATT-CAAATTGAGTATATTGATATATCTC 234
Query 253 CGTTACCGTTAATTAACACGGATCTTGAAGTCAACGGTACTTATCCTCCAGTTGTTGAAG 312
|||||||||| || ||||||||||||||||||||||||||||||||||| || |||||||
Sbjct 235 CGTTACCGTTGATAAACACGGATCTTGAAGTCAACGGTACTTATCCTCCGGTCGTTGAAG 294
Query 313 CTTTCCGACAGAAGATTCTTGAAGCTGATAGTATCTTGTTTGCTTCTCCTGAGTATAACT 372
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 295 CTTTCCGGCAGAAGATTCTTGAAGCTGATAGTATCTTGTTTGCTTCTCCTGAGTATAATT 354
Query 373 TCTCTGTTTCAGCTCCACTTAAGAATGCTCTTGACTGGGCTTCAAGACCACCTAATGTTT 432
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 355 TCTCTGTTTCAGCTCCACTTAAGAATGCTCTTGACTGGGCTTCAAGACCACCTAATGTTT 414
Query 433 GGGCGGACAAACCAGCTGCTATTATAAGCACCGGTGGAGGTTTTGGTGGAGGAAGATCGC 492
|||| |||||||| |||||| ||||||||||||||||||||||||||||||||||||| |
Sbjct 415 GGGCTGACAAACCCGCTGCTGTTATAAGCACCGGTGGAGGTTTTGGTGGAGGAAGATCAC 474
Query 493 AGTACCATCTTCGACAAATCGGAGTCTTCCTTGATCTTCATTTCATCAACAAACCCGAGT 552
| || |||||||||||||| ||||| ||| ||||||||||||||||||||||||||||||
Sbjct 475 AATATCATCTTCGACAAATTGGAGTATTCATTGATCTTCATTTCATCAACAAACCCGAGT 534
Query 553 TTACTCTCAATGCATTTCAGCCACCTCAGAAATTTGATGCAGAAGGAAACCTTGTCGATG 612
||||||||||||| |||||||| ||||||||||| ||||||||||||||||| |||||||
Sbjct 535 TTACTCTCAATGCGTTTCAGCCGCCTCAGAAATTCGATGCAGAAGGAAACCTAGTCGATG 594
Query 613 AAGTGACTAAGGAGAGGTTGAAACAAGTCCTTCTCTCGTTACAAGCATTCACACTT-CGA 671
||| | ||||||||||||||||||||||||| ||||||||||||||||| || ||| |||
Sbjct 595 AAGCGGCTAAGGAGAGGTTGAAACAAGTCCTGCTCTCGTTACAAGCATTTAC-CTTACGA 653
Query 672 CTTCAAGGTAAGTAAATGAAGTGGATTAATTCT-TGATCATTTG--AGATTGGTCGTGTG 728
||||||||||||||| | |||||| |||| ||| ||| |||||| |||| |||||||||
Sbjct 654 CTTCAAGGTAAGTAAGTTAAGTGGGTTAAATCTCTGAGCATTTGTGAGATCGGTCGTGTG 713
Query 729 ATAAAAATAATGCCAATTGTTGTGATAATAAACAGTGT 766
|| |||||||||||||||||||||||||||||||||||
Sbjct 714 ATGAAAATAATGCCAATTGTTGTGATAATAAACAGTGT 751
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30955808604
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5