BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G27900.1
Length=735
Score E
Sequences producing significant alignments: (Bits) Value
Ahg922689 jgi|Araly1|922689|scaffold_103970.1 809 0.0
Ahg913393 jgi|Araly1|913393|Al_scaffold_0001_3647 318 3e-86
Ahg922694 jgi|Araly1|922694|scaffold_103975.1 278 5e-74
Ahg314017 jgi|Araly1|314017|fgenesh1_pm.C_scaffold_1002797 130 2e-29
> Ahg922689 jgi|Araly1|922689|scaffold_103970.1
Length=769
Score = 809 bits (438), Expect = 0.0
Identities = 647/745 (87%), Gaps = 26/745 (3%)
Strand=Plus/Plus
Query 1 ATGGAATCTATGTCAATGAATCACCGTGTTGTGCGTCACTGTCACAACAAGAAATTACAA 60
||||||||||||||| ||| |||||||| | |||| | ||||||||||||||||||||
Sbjct 21 ATGGAATCTATGTCACTGAGTCACCGTG-T-TGCG---C-GTCACAACAAGAAATTACAA 74
Query 61 CAGTCTAGATATTCTCCGTACAGTAAAGAGAATATCATCAGTACCATTGAGAAGGAGATG 120
|||||||||||||||| ||||||||||||| || | || || ||||||||||||||||
Sbjct 75 AAGTCTAGATATTCTCCTTACAGTAAAGAGACTA--A-CATTATCATTGAGAAGGAGATG 131
Query 121 CAGAAAGATGAGGCTATACGATTGGGAGTTGAGCTCTCGCTCTTTGTGGCTGAAACAATG 180
||||||||||||||||||||| | ||||||||| |||||||||||||||||||| |||||
Sbjct 132 CAGAAAGATGAGGCTATACGACTCGGAGTTGAGTTCTCGCTCTTTGTGGCTGAAGCAATG 191
Query 181 GTCTTATTATCTGACAACCTACGTTCTATGTTACTGTTCTGTCTTTGGGTATTGACGAAT 240
|||||||||||||| || ||||||||||||||||||||||||||||| || ||| | ||
Sbjct 192 GTCTTATTATCTGATGACATACGTTCTATGTTACTGTTCTGTCTTTGGCTACTGAAGGAT 251
Query 241 GCAGAGTGCACATATTTCACCGATCCCGTGGTAGGAAGGTTGCATTGT-GTTATGCTATA 299
|||| | | |||| |||| |||||||||||||||| || ||| | |||| | ||||
Sbjct 252 GCAG-GAAAAGGTATT--ACCGCTCCCGTGGTAGGAAGGCTG-ATTTTTGTTACGATATA 307
Query 300 TGTGTTAGAAACATATATCAAACCTAAGAATGGTGTCTATCTGGCTGATGTCAAATCGAA 359
|||||| ||||||||||||||||| |||||||| ||||||| ||||| || |||||||||
Sbjct 308 TGTGTTTGAAACATATATCAAACCCAAGAATGGAGTCTATCAGGCTGGTGGCAAATCGAA 367
Query 360 CCAATGGGAAGTTTTCGTAAAGTCTTGCAAGAGTTTTGTTTTTGGAATCAGAGAATTGGA 419
||||||||| || ||||||| ||| || ||| |||||||||||||||| ||||||||||
Sbjct 368 ACAATGGGAACTTATCGTAAACTCTAGCCAGAATTTTGTTTTTGGAATCGGAGAATTGGA 427
Query 420 TCGCATTGTATTGATTCTC-GGAAAGAGAGAAAGCTCTTCTTG-TGAGGTAGTGAAAACG 477
||||||||| |||||||| |||| |||||||||||||| ||| |||| ||||||||||
Sbjct 428 TCGCATTGTTTTGATTCTTAGGAA-GAGAGAAAGCTCTT-TTGGTGAGTTAGTGAAAACA 485
Query 478 TCTGATTTTGAACACTGTAACCAAGAGCTGAAGAAGCTAGAGGAGACGTTGAGGTCTGCC 537
|| ||||||||||||| |||||||||||||| |||||||||||||||||||||||||||
Sbjct 486 TCGGATTTTGAACACTACAACCAAGAGCTGAAAAAGCTAGAGGAGACGTTGAGGTCTGCC 545
Query 538 AAAGATGTTTCAGAAGCGAATGGATTCGCGAGAGAAGTGATAAAGTCTAACATACTTTGT 597
||| |||||||||| ||| ||||||| ||||||||| ||||||||||||||| |||| |
Sbjct 546 AAAAATGTTTCAGAGGCGTATGGATTTTCGAGAGAAGCGATAAAGTCTAACATTCTTTAT 605
Query 598 TTGTGGAAGTCTCTCTTTGAAACATCACAACCCAAGGTGA---T-A--AACCTTAAGAAT 651
||||||||| ||||||||||||| |||| ||| ||||||| | | |||| ||| |||
Sbjct 606 TTGTGGAAGCCTCTCTTTGAAACCTCACCACCTAAGGTGAAAGTGATCAACCCTAAAAAT 665
Query 652 AGAACTCTTGATATGTTTAAGCCTCTCTTGAACCAAGCAAGGGAG-ATTACTTGCTCTAG 710
|||| |||||| ||||||||||||||||||| |||||| |||||| || |||||||| |
Sbjct 666 AGAATTCTTGAGATGTTTAAGCCTCTCTTGATCCAAGCCAGGGAGGATG-CTTGCTCTCG 724
Query 711 TCTTATTGCTTCATTACACATATGA 735
|||||||||||| ||||| ||||||
Sbjct 725 TCTTATTGCTTCTTTACATATATGA 749
> Ahg913393 jgi|Araly1|913393|Al_scaffold_0001_3647
Length=582
Score = 318 bits (172), Expect = 3e-86
Identities = 257/297 (87%), Gaps = 10/297 (3%)
Strand=Plus/Plus
Query 444 GAGAGAAAGCTCTTCTT-GTGAGGTAGTGAAA--AC-GTCTGATTTTGAACACTGTAACC 499
|||||||||||||| || |||| ||||| ||| || | ||||||||||||||| ||||
Sbjct 291 GAGAGAAAGCTCTT-TTGGTGATGTAGTAAAATTACAGACTGATTTTGAACACTACAACC 349
Query 500 AAGAGCTGAAGAAGCTAGAGGAGACGTTGAGGTCTGCCAAAGATGTTTCAGAAGCGAATG 559
||||||||||||||||||||||||| ||||| |||||||||||||||||||| ||||| |
Sbjct 350 AAGAGCTGAAGAAGCTAGAGGAGACATTGAGCTCTGCCAAAGATGTTTCAGAGGCGAACG 409
Query 560 GATTCGCGAGAGAAGTGATAAAGTCTAACATACTTTGTTTGTGGAAGTCTCTCTTTGAAA 619
|||| |||||||||| ||||||||||||||| ||| | ||||| |||||||||||||||
Sbjct 410 GATTTGCGAGAGAAGCGATAAAGTCTAACATTCTTCATATGTGGGAGTCTCTCTTTGAAA 469
Query 620 CATCACAACCCAAGGTGATAAACCTTAAGAATAGAACT-CTTGATATGTTTAAGCCTCTC 678
|| | || || ||| ||||| ||| |||| ||||| | ||||| ||||||| ||||||
Sbjct 470 CA-C-CATCC-AAGTTGATACACCCTAAGGTTAGAA-TGCTTGAGATGTTTAGGCCTCTG 525
Query 679 TTGAACCAAGCAAGGGAGATTACTTGCTCTAGTCTTATTGCTTCATTACACATATGA 735
||||||||| ||||||||| || ||||||| ||||||||||||| ||||||||||||
Sbjct 526 TTGAACCAATCAAGGGAGAATATTTGCTCTCGTCTTATTGCTTCTTTACACATATGA 582
Score = 148 bits (80), Expect = 4e-35
Identities = 113/129 (88%), Gaps = 2/129 (2%)
Strand=Plus/Plus
Query 115 GAGATGCAGAAAGATGAGGCTATACGATTGGGAGTTGAGCTCTCGCTCTTTGTGGCTGAA 174
|||| |||||||||||||||||||||| | ||||||||||||||||||||||||||||||
Sbjct 133 GAGAGGCAGAAAGATGAGGCTATACGACTCGGAGTTGAGCTCTCGCTCTTTGTGGCTGAA 192
Query 175 ACAATGGTCTTATTATCTGACAACCTACGTTCTATGTTACTGTTCTGTC-TTTGGGTATT 233
||||| || ||||||| || ||||||||||||||||||| |||| || ||||| || |
Sbjct 193 GCAATGTTCATATTATCCGATGACCTACGTTCTATGTTACTCTTCTTTCCTTTGG-TAGT 251
Query 234 GACGAATGC 242
|| | ||||
Sbjct 252 GAAGTATGC 260
> Ahg922694 jgi|Araly1|922694|scaffold_103975.1
Length=841
Score = 278 bits (150), Expect = 5e-74
Identities = 487/641 (76%), Gaps = 58/641 (9%)
Strand=Plus/Plus
Query 121 CAGAAAGATGAGGCTATA-CGATTGGGAGTTGAGCTCTCGCTCTTTGTGGCTGAAACAAT 179
||||||||||||||| | ||| | ||||||||||||||| | |||||||||||| ||||
Sbjct 213 CAGAAAGATGAGGCT-GAGCGACTCGGAGTTGAGCTCTCGGTATTTGTGGCTGAAGCAAT 271
Query 180 GGTCTTATTATCTGACAACCTACGTTCTATGTTACTGTTCTGTCTT-TG--GGTATTGAC 236
| ||||||||||||| |||||||||||||||||| |||||| || | ||||||
Sbjct 272 GTTCTTATTATCTGATGACCTACGTTCTATGTTACACTTCTGTGTTCAGATAATATTGAA 331
Query 237 G-A-A-T-GCA-GAGTGCACATATTTCA-CCG-AT----CCC--GTGGTAGGAAGGTTGC 283
| | | | | || | ||| | | | || ||| |||||| || ||
Sbjct 332 GTATATTATTACTAG-GAACAAAGAAAAGAAGAATCCCACCCAAGTGGTAAAAATACTG- 389
Query 284 A-TTGTGTTATGCTATATGTGTTAGAAACATATATCAAACCTAAGAATGGTGTCTATCTG 342
| || ||| |||||||||||||| ||||||||||||||||| |||||||| || |||| |
Sbjct 390 ATTTATGTCATGCTATATGTGTTTGAAACATATATCAAACCAAAGAATGGAGTGTATCAG 449
Query 343 GCTGATGTCAAATCGAACC-AATGGGAAGTTTTCGTAAA--GTCTTGCAAG-AGTTTTGT 398
||||||| |||||| ||| ||| ||| | || ||| |||| | || | |||||
Sbjct 450 GCTGATGGCAAATC-CACCAAATTGGATCTGATC--AAATCGTCTACCCAGCA-TTTTGC 505
Query 399 TTTTGGAATCA-GAGAATTGGATCGCATTGTATTGATTCTCGGAAAGAGAGAAAGCTCTT 457
|| || |||| ||| ||||| | |||||| ||| ||||| |||| | | |
Sbjct 506 TTACGGGATCAGGAG-TTTGGAGCACATTGTTTTGGTTCTC-GAAA-A-TG---G----- 553
Query 458 CTTGTGAGGTAGTGAAAACG-TCTGATTTTGAACACTGTAACCAAGAGCTGAAGAAGCTA 516
| | | || || | || | | |||||||||||| |||||||||||||||||||||
Sbjct 554 C--G-GCTCTA-TGCCACCGAT-TTATTTTGAACACTACAACCAAGAGCTGAAGAAGCTA 608
Query 517 GAGGAGACGTTGAGGTCTGCCAAAGATGTTTCAGAAGCGAATGGATTCGCGAGAGAAGTG 576
||||||| |||||||||| |||||||||||| ||| |||||||| || | |||||||| |
Sbjct 609 GAGGAGAAGTTGAGGTCTTCCAAAGATGTTTTAGAGGCGAATGGTTTTGTGAGAGAAGCG 668
Query 577 ATAAAGTCTAACATACTTTGTTTGTGGAAGTCTCTCTTTGAAACATCACAACCCAAGGTG 636
|| ||||||||||| ||| ||||||||||||||| |||| |||| | | ||| ||
Sbjct 669 ATGAAGTCTAACATTCTTCATTTGTGGAAGTCTCTATTTGTAACA-CT-A-CCCT---TG 722
Query 637 ATAAACCTTAAGAATAGAACTCTTGATATGTTTAAGCCTCTCTTGAACCAAGCAAGGGAG 696
||| || || | ||||| || ||||||||||| |||||||||||||||||||||| ||
Sbjct 723 ATATTCCCTAGGGTTAGAATTCATGATATGTTTAGGCCTCTCTTGAACCAAGCAAGGCAG 782
Query 697 -AT-TACTTGCTCTAGTCTTATTGCTTCATTACACATATGA 735
|| | ||||||| ||||||||||||| ||||||||||||
Sbjct 783 GATGT--TTGCTCTCGTCTTATTGCTTCTTTACACATATGA 821
> Ahg314017 jgi|Araly1|314017|fgenesh1_pm.C_scaffold_1002797
Length=414
Score = 130 bits (70), Expect = 2e-29
Identities = 90/100 (90%), Gaps = 0/100 (0%)
Strand=Plus/Plus
Query 109 GAGAAGGAGATGCAGAAAGATGAGGCTATACGATTGGGAGTTGAGCTCTCGCTCTTTGTG 168
|||||||||| ||||||||| ||| |||||||| | ||||||||||||||||||||||||
Sbjct 73 GAGAAGGAGAAGCAGAAAGAAGAGACTATACGACTCGGAGTTGAGCTCTCGCTCTTTGTG 132
Query 169 GCTGAAACAATGGTCTTATTATCTGACAACCTACGTTCTA 208
|||||| ||||| || |||||||||| ||||||||||||
Sbjct 133 GCTGAAGCAATGTTCATATTATCTGATGACCTACGTTCTA 172
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 27067271070
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5