BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G27910.1
Length=885
Score E
Sequences producing significant alignments: (Bits) Value
Ahg936560 jgi|Araly1|936560|scaffold_500751.1 946 0.0
> Ahg936560 jgi|Araly1|936560|scaffold_500751.1
Length=809
Score = 946 bits (512), Expect = 0.0
Identities = 668/745 (90%), Gaps = 4/745 (1%)
Strand=Plus/Plus
Query 143 AGATCTATGTTTTTGGTGGATGTATCAATGGCGATATGACTTCTAATGTGTTTGTTATCG 202
||||||||||| | |||||||| |||||||| || |||| |||||||||||||||||||
Sbjct 46 AGATCTATGTTCTCGGTGGATGCATCAATGGTGAGCTGACCTCTAATGTGTTTGTTATCG 105
Query 203 ATTGCCTACATGGAACATTTCAATTTCTTCCTAGTATGCGTGTGCCACGTGGCTGTGCGG 262
||||||||||| | || |||| |||||||||||||||||||||| |||||||||||||||
Sbjct 106 ATTGCCTACATAGCACGTTTCGATTTCTTCCTAGTATGCGTGTGTCACGTGGCTGTGCGG 165
Query 263 CGTTTGGTATCGTAGATGGGAAGATTTATGTAATTGGAGGGTATAATAAGGCAGATTCGT 322
|||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 166 CGTTTGGTATTGTAGATGGGAAGATTTATGTAATCGGAGGGTATAATAAGGCAGATTCGT 225
Query 323 TGGATAATTGGGTTGAGGTTTTTGACCTCGAGAAGCAAACTTGGGAGTCTTTTTCAGGAT 382
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 226 TGGATAATTGGGTTGAGGTTTTTGACCTCGAGAAGCAAACTTGGGAGTCTTTTTCAGGTT 285
Query 383 TGTGTAATGAAGAGTTGTCCAAGATAACGCTCAAGAGTGTTGTGATGAACAAGAAGATTT 442
||||||||||||| || | ||||||||||||||||||||||||||||||| |||||||||
Sbjct 286 TGTGTAATGAAGATTTATACAAGATAACGCTCAAGAGTGTTGTGATGAACGAGAAGATTT 345
Query 443 ACATAATGGATCGTGGAAATGGCATTGTTTTCGATCCTAAGAAAGGTGTATGGGAGAGGG 502
||||||||||||| ||| | | |||||| ||||||||| |||||||||||||||| ||
Sbjct 346 ACATAATGGATCGAAGAACTAACGTTGTTTACGATCCTAAAAAAGGTGTATGGGAGAAGG 405
Query 503 ACTTCTTATTGGATAGAGATTGGGTAGTTGGTTCGTGCGTTATTGACAACATGTTGTATA 562
||||||||||| |||| |||||| ||||||||||||||||||||| ||||||||||| |
Sbjct 406 ACTTCTTATTGAATAGTGATTGGAAAGTTGGTTCGTGCGTTATTGATAACATGTTGTACA 465
Query 563 CTTTTGGTTTTGACAGTGTAAAACGTATTTATCGAGTACGTGTCTATGATCCAAGTGTTA 622
| ||||||||||| || |||| || |||||||| ||| |||||||||||||| || |
Sbjct 466 CATTTGGTTTTGATTGTCAAAAAAGTGTTTATCGAATACACGTCTATGATCCAAGAGTGA 525
Query 623 GGGTGTGGAGTTTCGTGAAAGGTATTGAAGA-TATACCAAAAATGGATGGAACTCTTGGG 681
||||||||||||||||||||||| |||| || ||||||||| ||| ||| || || ||
Sbjct 526 GGGTGTGGAGTTTCGTGAAAGGTGTTGA-GAATATACCAAAGATGCATGAAATTCAAGGA 584
Query 682 TCTAGAATGGCAAATCATGGCGGAAAGCTCGTAATTTTGCTCAACCTTGATAAAAATGGA 741
||||||||||| |||||||||||| | ||| | ||||||||||||||||||||| ||||
Sbjct 585 TCTAGAATGGCGAATCATGGCGGAGATCTCACAGTTTTGCTCAACCTTGATAAAAGTGGA 644
Query 742 GGAACAGAGCTTTGGTGTATAAAAATTGCACTGGAAAGGCGAGGACAACA-AGGAGAGAT 800
||||||||| ||||||||||| || ||||| |||||||||||||| |||| || ||||||
Sbjct 645 GGAACAGAGATTTGGTGTATACAAGTTGCATTGGAAAGGCGAGGAGAACACAG-AGAGAT 703
Query 801 TTGGGGAAAGATTTTGTGGTATAATCTTGTGCTAACTTTGGAAAATTCATCAACAATTGT 860
|||||||||| ||||||||| |||||||||||||||||||||||||||||| ||||||||
Sbjct 704 TTGGGGAAAGGTTTTGTGGTCTAATCTTGTGCTAACTTTGGAAAATTCATCGACAATTGT 763
Query 861 TGAATGTTTCGATATAACGATTTGA 885
| ||||||| ||| |||| ||||||
Sbjct 764 TCAATGTTTGGATGTAACAATTTGA 788
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32785708620
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5