BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G27920.1

Length=687
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg347167 jgi|Araly1|347167|fgenesh1_pg.C_scaffold_5000559          1164    0.0  


> Ahg347167 jgi|Araly1|347167|fgenesh1_pg.C_scaffold_5000559
Length=687

 Score = 1164 bits (630),  Expect = 0.0
 Identities = 668/687 (97%), Gaps = 0/687 (0%)
 Strand=Plus/Plus

Query  1    ATGAGAATAAGGAGAAGAGATGAAAAAGAGAATCAAGAATACAAGAAAGGTTTATGGACA  60
            |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| 
Sbjct  1    ATGAGAATAAGGAGAAGAGAGGAAAAAGAGAATCAAGAATACAAGAAAGGTTTATGGACT  60

Query  61   GTTGAAGAAGACAACATCCTTATGGACTATGTTCTTAATCATGGCACTGGCCAATGGAAC  120
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  61   GTTGAAGAAGACAACATCCTTATGGACTATGTTCTTAATCATGGCACTGGCCAATGGAAC  120

Query  121  CGCATCGTCAGAAAAACTGGGCTAAAGAGATGTGGGAAAAGTTGTAGACTGAGATGGATG  180
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  121  CGCATCGTCAGAAAAACTGGGCTAAAGAGATGTGGGAAAAGTTGTAGACTGAGATGGATG  180

Query  181  AATTATTTGAGCCCTAATGTGAACAAAGGCAATTTCACTGAACAAGAAGAAGACCTCATT  240
            ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct  181  AATTATTTGAGCCCTAATGTGAATAAAGGCAATTTCACTGAACAAGAAGAAGACCTCATT  240

Query  241  ATTCGTCTCCACAAGCTCCTCGGCAATAGATGGTCTTTGATAGCTAAAAGAGTACCGGGA  300
            |||||||||||||||||||| ||||||||||||||||| ||||| |||||||| ||||||
Sbjct  241  ATTCGTCTCCACAAGCTCCTTGGCAATAGATGGTCTTTAATAGCCAAAAGAGTGCCGGGA  300

Query  301  AGAACAGATAACCAAGTCAAGAACTACTGGAACACTCATCTCAGCAAAAAACTCGTCGGA  360
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  301  AGAACAGATAACCAAGTCAAGAACTACTGGAACACTCATCTCAGCAAAAAACTCGTCGGA  360

Query  361  GATTACTCCTCCGCCGTCAAAACCACCGGAGAAGACGACGACTCTCCACCGTCATTGTTC  420
            ||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||
Sbjct  361  GATTACTCCTCCGCCGTCAAAACCACCGGAGAAGACGACGACTCTCTGCCGTCATTGTTC  420

Query  421  ATCACTGCCGCCACACCTTCTTCTTGTCATCATCAACAAGAAAATATCTACGAGAATATA  480
            ||||||||||||||| |||||||| |||||||||||||||||||| ||||||||||||||
Sbjct  421  ATCACTGCCGCCACAACTTCTTCTCGTCATCATCAACAAGAAAATGTCTACGAGAATATA  480

Query  481  GCCAAGAGCTTTAACGGCGTCGTATCAGCTTCGTACGAGGATAAACCAAAACAAGAACTG  540
            |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  481  GCCAAGAGCTTTGACGGCGTCGTATCAGCTTCGTACGAGGATAAACCAAAACAAGAACTG  540

Query  541  GCTCAAAAAGATGTCCTAATGGCAACTACTAATGATCCAAGTCACTATTATGGCAATAAC  600
            ||||| || |||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct  541  GCTCACAACGATGTCTTAATGGCAACTACTAATGATCCAAGTCACTATTATGGCAATAAC  600

Query  601  GCTTTATGGGTTCATGACGACGATTTTGAGCTTAGTTCACTCGTAATGATGAATTTTGCT  660
            |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct  601  GCTTTATGGGTTCATGACGACGATTTTGAGCTGAGTTCACTCGTAATGATGAATTTTGCT  660

Query  661  TCTGGTGATGTTGAGTACTGCCTTTAG  687
            ||||||||| ||||||||||||| |||
Sbjct  661  TCTGGTGATATTGAGTACTGCCTCTAG  687



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 25237371054


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5