BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G27925.1
Length=1649
Score E
Sequences producing significant alignments: (Bits) Value
Ahg484581 jgi|Araly1|484581|fgenesh2_kg.5__573__AT3G27925.1 2115 0.0
> Ahg484581 jgi|Araly1|484581|fgenesh2_kg.5__573__AT3G27925.1
Length=1358
Score = 2115 bits (1145), Expect = 0.0
Identities = 1307/1381 (95%), Gaps = 27/1381 (2%)
Strand=Plus/Plus
Query 41 AATGGCGACGACGACGAGTTGTTCGcttctcctttcttccactctcttccttcactctcc 100
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1 AATGGCGACGACGACGAGTTGTTCGCTTCTCCTTTCTTCTACTCTCTTCCTTCACTCTCC 60
Query 101 tccttcttctcacctctccttcttcaatctctcttcttcacgatcctctccaatttctct 160
|||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 61 TCCTTCTTCTCAACTCTCCTTCTTCAACCTCTCTTCTTCACGATCCTCTCCAATTTCTCT 120
Query 161 tTACCCAATCCGATCCAAACGCTATTTCCGAATCCTCTCGAAGCTTTCACTAAACGACAA 220
|||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||
Sbjct 121 CTACCCAATCCGATCCAAACGCTATTTCCGAATTCTCTCGAAGCTTCCACTAAACGACAA 180
Query 221 CAACAGAGACGACGATGATGATACTCTTCATT-TTACTCCGTTCTCCGCCGTTAAACCTT 279
|||| | |||||||||||||||||| || || ||||||||||||||||||| ||||
Sbjct 181 CAAC----A--ACGATGATGATACTCTTC-TTCTTCCTCCGTTCTCCGCCGTTAAGCCTT 233
Query 280 TCTTCCTCCTCTGTACCTCCGTCGCGTTATCGTTTTCACTCTTCGCCGCTTCTCCCGCCG 339
|||||||||||||||||||||||||||||||||| ||||| |||||||||||| ||
Sbjct 234 TCTTCCTCCTCTGTACCTCCGTCGCGTTATCGTTCTCACTATTCGCCGCTTCT----CC- 288
Query 340 TTGAATCTGCCTCGGCGTTTGTAGTTAGTACTCCGAAGAAACTTCAAACTGATGAGCTCG 399
| ||| |||||||||||||| |||||||||| |||||||||||||||||||||||
Sbjct 289 -T---TCT---TCGGCGTTTGTAGTCAGTACTCCGAGGAAACTTCAAACTGATGAGCTCG 341
Query 400 CGACGGTTCGTTTGTTTCAAGAGAACACTCCTTCCGTTGTTTACATCACTAATCTCGCCG 459
| || |||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 342 CCACTGTTCGTTTGTTTCAAGAGAATACTCCTTCCGTTGTTTACATCACTAATCTCGCCG 401
Query 460 TGAGGCAGGACGCGTTTACATTGGACGTTCTTGAGGTACCTCAAGGCTCTGGTTCAGGAT 519
| ||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||
Sbjct 402 TCAGGCAGGACGCGTTTACATTGGATGTTCTTGAGGTACCACAAGGCTCTGGTTCAGGAT 461
Query 520 TTGTGTGGGATAAGCAAGGTCATATTGTTACCAATTACCATGTTATTCGTGGTGCTTCTG 579
|||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||
Sbjct 462 TTGTGTGGGATAAGCAAGGTCACATTGTTACCAATTATCATGTTATTCGTGGTGCTTCTG 521
Query 580 ATCTCAGGGTCACTCTTGCTGATCAAACAACATTTGATGCAAAAGTTGTTGGATTTGACC 639
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 522 ATCTCAGGGTGACTCTTGCTGATCAAACAACATTTGATGCAAAAGTTGTTGGATTTGATC 581
Query 640 AAGATAAGGATGTTGCAGTAT-TACGTATTGATGCACCGAAAAACAAATTAAGACCTATA 698
|||||||||||||||| || | ||||||||||||| ||||||||||||||||||||||||
Sbjct 582 AAGATAAGGATGTTGCGGT-TCTACGTATTGATGCGCCGAAAAACAAATTAAGACCTATA 640
Query 699 CCTG-TTGGAGTCTCTGCTGATCTGCTTGTTGGCCAGAAAGTCTTTGCCATTGGCAATCC 757
|| | ||||||||||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct 641 CC-GATTGGAGTCTCTGCGGATCTTCTTGTTGGCCAGAAAGTCTTTGCCATTGGCAATCC 699
Query 758 ATTTGGACTTGATCATACTCTCACAACTGGTGTTATAAGTGGTTTGCGAAGAGAAATTAG 817
||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||
Sbjct 700 TTTTGGACTTGATCATACTCTCACAACTGGTGTTATTAGTGGTTTACGAAGAGAAATTAG 759
Query 818 TTCTGCTGCAACTGGTCGTCCAATTCAAGATGTGATACAGACAGATGCAGCCATTAACCC 877
|||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 760 TTCTGCTGCAACTGGTCGTCCAATTCAAGATGTGATACAGACAGATGCTGCTATTAACCC 819
Query 878 TGGTAACAGCGGAGGACCTCTTCTAGATAGCTCAGGAACGTTAATTGGTATAAACACAGC 937
|||||| || |||||||||||||||||||| ||||||||| |||||||||||||||||||
Sbjct 820 TGGTAATAGTGGAGGACCTCTTCTAGATAGTTCAGGAACGCTAATTGGTATAAACACAGC 879
Query 938 CATTTATTCTCCTTCTGGTGCATCTTCTGGAGTGGGCTTTTCGATCCCAGTTGATACAGT 997
|||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 880 CATTTATTCTCCTTCTGGTGCATCTTCTGGAGTGGGCTTTTCGATCCCAGTTGACACCGT 939
Query 998 TGGTGGTATCGTTGATCAGCTGGTGAGATTTGGTAAAGTCACCAGACCAATCTTAGGTAT 1057
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 940 TGGTGGTATCGTTGATCAGCTGGTGAGATTTGGTAAAGTCACAAGACCAATCTTAGGTAT 999
Query 1058 CAAATTCGCACCGGACCAATCTGTTGAGCAATTGGGAGTGAGCGGTGTGCTCGTCTTGGA 1117
||||||||| ||||||||||||||||| |||||||||||||| |||||||||||||||||
Sbjct 1000 CAAATTCGCGCCGGACCAATCTGTTGAACAATTGGGAGTGAGTGGTGTGCTCGTCTTGGA 1059
Query 1118 TGCTCCTCCAAGTGGTCCAGCCGGCAAAGCCGGACTTCAGTCAACAAAACGTGATGGTTA 1177
|||||||||||||||||||||||| |||||||||||||||||||| |||||||| |||||
Sbjct 1060 TGCTCCTCCAAGTGGTCCAGCCGGGAAAGCCGGACTTCAGTCAACGAAACGTGACGGTTA 1119
Query 1178 CGGGAGACTAGTACTAGGAGACATAATCACGTCGGTGAACGGTACAAAAGTCTCTAACGG 1237
|||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1120 CGGGAGACTAATACTAGGAGACATAATCACGTCAGTGAACGGTACAAAAGTCTCTAACGG 1179
Query 1238 GAGTGATCTGTACCGGATTCTCGATCAATGCAAAGTCGGCGATGAGGTGACCGTAGAGGT 1297
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1180 GAGTGATCTGTACCGGATTCTCGATCAATGCAAAGTCGGCGATGAGGTGACCGTAGAGGT 1239
Query 1298 TCTAAGAGGCGATCACAAGGAGAAAATCTCTGTAACTCTCGAACCAAAGCCGGACGAGTC 1357
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1240 TCTAAGAGGCGATCACAAGGAGAAAATCTCTGTAACTCTCGAACCAAAACCGGACGAGTC 1299
Query 1358 TTAGAAACGTCGTTGAAAGAAGTAAATATACATAACGTGTAGaaaaaaa-GTCCGGTGGG 1416
|||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||
Sbjct 1300 TTAGAAACGTCGTTGAAAGAAGTAAATATA--TAACGTGTAGAAAAAAAAGTCCGGTGGG 1357
Query 1417 T 1417
|
Sbjct 1358 T 1358
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61820467635
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5