BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G27925.1 Length=1649 Score E Sequences producing significant alignments: (Bits) Value Ahg484581 jgi|Araly1|484581|fgenesh2_kg.5__573__AT3G27925.1 2115 0.0 > Ahg484581 jgi|Araly1|484581|fgenesh2_kg.5__573__AT3G27925.1 Length=1358 Score = 2115 bits (1145), Expect = 0.0 Identities = 1307/1381 (95%), Gaps = 27/1381 (2%) Strand=Plus/Plus Query 41 AATGGCGACGACGACGAGTTGTTCGcttctcctttcttccactctcttccttcactctcc 100 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 1 AATGGCGACGACGACGAGTTGTTCGCTTCTCCTTTCTTCTACTCTCTTCCTTCACTCTCC 60 Query 101 tccttcttctcacctctccttcttcaatctctcttcttcacgatcctctccaatttctct 160 |||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 61 TCCTTCTTCTCAACTCTCCTTCTTCAACCTCTCTTCTTCACGATCCTCTCCAATTTCTCT 120 Query 161 tTACCCAATCCGATCCAAACGCTATTTCCGAATCCTCTCGAAGCTTTCACTAAACGACAA 220 |||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||| Sbjct 121 CTACCCAATCCGATCCAAACGCTATTTCCGAATTCTCTCGAAGCTTCCACTAAACGACAA 180 Query 221 CAACAGAGACGACGATGATGATACTCTTCATT-TTACTCCGTTCTCCGCCGTTAAACCTT 279 |||| | |||||||||||||||||| || || ||||||||||||||||||| |||| Sbjct 181 CAAC----A--ACGATGATGATACTCTTC-TTCTTCCTCCGTTCTCCGCCGTTAAGCCTT 233 Query 280 TCTTCCTCCTCTGTACCTCCGTCGCGTTATCGTTTTCACTCTTCGCCGCTTCTCCCGCCG 339 |||||||||||||||||||||||||||||||||| ||||| |||||||||||| || Sbjct 234 TCTTCCTCCTCTGTACCTCCGTCGCGTTATCGTTCTCACTATTCGCCGCTTCT----CC- 288 Query 340 TTGAATCTGCCTCGGCGTTTGTAGTTAGTACTCCGAAGAAACTTCAAACTGATGAGCTCG 399 | ||| |||||||||||||| |||||||||| ||||||||||||||||||||||| Sbjct 289 -T---TCT---TCGGCGTTTGTAGTCAGTACTCCGAGGAAACTTCAAACTGATGAGCTCG 341 Query 400 CGACGGTTCGTTTGTTTCAAGAGAACACTCCTTCCGTTGTTTACATCACTAATCTCGCCG 459 | || |||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 342 CCACTGTTCGTTTGTTTCAAGAGAATACTCCTTCCGTTGTTTACATCACTAATCTCGCCG 401 Query 460 TGAGGCAGGACGCGTTTACATTGGACGTTCTTGAGGTACCTCAAGGCTCTGGTTCAGGAT 519 | ||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||| Sbjct 402 TCAGGCAGGACGCGTTTACATTGGATGTTCTTGAGGTACCACAAGGCTCTGGTTCAGGAT 461 Query 520 TTGTGTGGGATAAGCAAGGTCATATTGTTACCAATTACCATGTTATTCGTGGTGCTTCTG 579 |||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||| Sbjct 462 TTGTGTGGGATAAGCAAGGTCACATTGTTACCAATTATCATGTTATTCGTGGTGCTTCTG 521 Query 580 ATCTCAGGGTCACTCTTGCTGATCAAACAACATTTGATGCAAAAGTTGTTGGATTTGACC 639 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 522 ATCTCAGGGTGACTCTTGCTGATCAAACAACATTTGATGCAAAAGTTGTTGGATTTGATC 581 Query 640 AAGATAAGGATGTTGCAGTAT-TACGTATTGATGCACCGAAAAACAAATTAAGACCTATA 698 |||||||||||||||| || | ||||||||||||| |||||||||||||||||||||||| Sbjct 582 AAGATAAGGATGTTGCGGT-TCTACGTATTGATGCGCCGAAAAACAAATTAAGACCTATA 640 Query 699 CCTG-TTGGAGTCTCTGCTGATCTGCTTGTTGGCCAGAAAGTCTTTGCCATTGGCAATCC 757 || | ||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| Sbjct 641 CC-GATTGGAGTCTCTGCGGATCTTCTTGTTGGCCAGAAAGTCTTTGCCATTGGCAATCC 699 Query 758 ATTTGGACTTGATCATACTCTCACAACTGGTGTTATAAGTGGTTTGCGAAGAGAAATTAG 817 ||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||| Sbjct 700 TTTTGGACTTGATCATACTCTCACAACTGGTGTTATTAGTGGTTTACGAAGAGAAATTAG 759 Query 818 TTCTGCTGCAACTGGTCGTCCAATTCAAGATGTGATACAGACAGATGCAGCCATTAACCC 877 |||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 760 TTCTGCTGCAACTGGTCGTCCAATTCAAGATGTGATACAGACAGATGCTGCTATTAACCC 819 Query 878 TGGTAACAGCGGAGGACCTCTTCTAGATAGCTCAGGAACGTTAATTGGTATAAACACAGC 937 |||||| || |||||||||||||||||||| ||||||||| ||||||||||||||||||| Sbjct 820 TGGTAATAGTGGAGGACCTCTTCTAGATAGTTCAGGAACGCTAATTGGTATAAACACAGC 879 Query 938 CATTTATTCTCCTTCTGGTGCATCTTCTGGAGTGGGCTTTTCGATCCCAGTTGATACAGT 997 |||||||||||||||||||||||||||||||||||||||||||||||||||||| || || Sbjct 880 CATTTATTCTCCTTCTGGTGCATCTTCTGGAGTGGGCTTTTCGATCCCAGTTGACACCGT 939 Query 998 TGGTGGTATCGTTGATCAGCTGGTGAGATTTGGTAAAGTCACCAGACCAATCTTAGGTAT 1057 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 940 TGGTGGTATCGTTGATCAGCTGGTGAGATTTGGTAAAGTCACAAGACCAATCTTAGGTAT 999 Query 1058 CAAATTCGCACCGGACCAATCTGTTGAGCAATTGGGAGTGAGCGGTGTGCTCGTCTTGGA 1117 ||||||||| ||||||||||||||||| |||||||||||||| ||||||||||||||||| Sbjct 1000 CAAATTCGCGCCGGACCAATCTGTTGAACAATTGGGAGTGAGTGGTGTGCTCGTCTTGGA 1059 Query 1118 TGCTCCTCCAAGTGGTCCAGCCGGCAAAGCCGGACTTCAGTCAACAAAACGTGATGGTTA 1177 |||||||||||||||||||||||| |||||||||||||||||||| |||||||| ||||| Sbjct 1060 TGCTCCTCCAAGTGGTCCAGCCGGGAAAGCCGGACTTCAGTCAACGAAACGTGACGGTTA 1119 Query 1178 CGGGAGACTAGTACTAGGAGACATAATCACGTCGGTGAACGGTACAAAAGTCTCTAACGG 1237 |||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 1120 CGGGAGACTAATACTAGGAGACATAATCACGTCAGTGAACGGTACAAAAGTCTCTAACGG 1179 Query 1238 GAGTGATCTGTACCGGATTCTCGATCAATGCAAAGTCGGCGATGAGGTGACCGTAGAGGT 1297 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1180 GAGTGATCTGTACCGGATTCTCGATCAATGCAAAGTCGGCGATGAGGTGACCGTAGAGGT 1239 Query 1298 TCTAAGAGGCGATCACAAGGAGAAAATCTCTGTAACTCTCGAACCAAAGCCGGACGAGTC 1357 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 1240 TCTAAGAGGCGATCACAAGGAGAAAATCTCTGTAACTCTCGAACCAAAACCGGACGAGTC 1299 Query 1358 TTAGAAACGTCGTTGAAAGAAGTAAATATACATAACGTGTAGaaaaaaa-GTCCGGTGGG 1416 |||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||| Sbjct 1300 TTAGAAACGTCGTTGAAAGAAGTAAATATA--TAACGTGTAGAAAAAAAAGTCCGGTGGG 1357 Query 1417 T 1417 | Sbjct 1358 T 1358 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 61820467635 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5