BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G27930.1
Length=1692
Score E
Sequences producing significant alignments: (Bits) Value
Ahg484582 jgi|Araly1|484582|fgenesh2_kg.5__574__AT3G27930.1 2344 0.0
> Ahg484582 jgi|Araly1|484582|fgenesh2_kg.5__574__AT3G27930.1
Length=1557
Score = 2344 bits (1269), Expect = 0.0
Identities = 1470/1567 (94%), Gaps = 14/1567 (1%)
Strand=Plus/Plus
Query 1 ATATTCAAACGTGAAGCAAAAGCAGAAGCGAGACTATCGCCGAGAGCTCTCACTAACTAT 60
||||||||||||||||||||||||||||||| ||||||||| ||||||| |||||||
Sbjct 1 ATATTCAAACGTGAAGCAAAAGCAGAAGCGACACTATCGCC----GCTCTCAGTAACTAT 56
Query 61 TGAATTCATCGAAGAAGCTCTCTCGTTGTCGCAGAATCTCTTCTTCTCCGTTCTAGAACA 120
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 57 TG-ATTCATCGAAGAAGCTCTCTCGTTGTCGCAGAATCTCTTCTTCTCCGTTCTAGAGTA 115
Query 121 ATGGGGAATGCTCTTGTCAAAAAAGAACCACCGCCTCCGGTGGTACTCGTTCCTCCGCTC 180
|||||||||||||| ||||||||||||||||||||||| ||||| || ||||||||||||
Sbjct 116 ATGGGGAATGCTCTGGTCAAAAAAGAACCACCGCCTCCTGTGGTCCTAGTTCCTCCGCTC 175
Query 181 TTTGATTACCCTCCTCTCTCCGCCCGCACTAGGATGTTGGAATCATCATATAATTTGTTG 240
||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 176 TTTGATTTCCCTCCTCTCTCCGCCCGTACTAGGATGTTGGAATCATCATATAATTTGTTG 235
Query 241 TTTGGGAAGCTTGCATTGAGATGTCTATTTGAGGATTACTTTGAAGAAGCTAATCGA-TT 299
||||||||||||||||||| |||||||||||||||||||||||||||||| ||| | ||
Sbjct 236 TTTGGGAAGCTTGCATTGAAATGTCTATTTGAGGATTACTTTGAAGAAGCAAAT-AATTT 294
Query 300 CACGGGC-AAGTTTTTGTTGAAGCCTACTGATGATCCTCATGTGGATTTGGTTGCATCTG 358
| | ||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 295 CTC-GGCGAAGTTTTTGTTGAAGCCTATTGATGATCCTCATGTGGATTTGGTTGCATCTG 353
Query 359 TTTCGGGTGCTGTAGATGGTAGAGTGGAAGGAGATTTTGTTGGGAATGCGGAGTTTCGCT 418
| |||||||| ||||||||||||| ||| |||||||||||||| || |||||||||||||
Sbjct 354 TATCGGGTGCAGTAGATGGTAGAGCGGATGGAGATTTTGTTGGAAAAGCGGAGTTTCGCT 413
Query 419 GGCAAAGTGATGTTGATGATCCTCATACTTTTGTTGATCTCTCTGTGTCAACCTCGAATC 478
|||||||||||||||||||||||||||||||||| || |||||||||||||| |||||||
Sbjct 414 GGCAAAGTGATGTTGATGATCCTCATACTTTTGTGGACCTCTCTGTGTCAACATCGAATC 473
Query 479 CGGTTCTTCTAATGAGGTCTTCTGCTTACTATCCTAAATATGGAATCGGGGCATTTGCGG 538
||||||||||||||||||||||||||||||| ||||| ||||| |||||||||||||| |
Sbjct 474 CGGTTCTTCTAATGAGGTCTTCTGCTTACTACCCTAAGTATGGGATCGGGGCATTTGCAG 533
Query 539 TCTACCCTTTGATTTCAAAAATTACTGGAAAATCATCTGAAGAATATAGAATCATGGGGT 598
||||||||||||||||||||| |||||||| | ||||||||||||||||||||||||||
Sbjct 534 TCTACCCTTTGATTTCAAAAAAGACTGGAAACTTATCTGAAGAATATAGAATCATGGGGT 593
Query 599 TGAGATATGGCTCAACGAATTTGTCTGTCGGAGCTACTGTCACTCCTTTTAGTGCGAATA 658
|||||||||||||||||||||||||| |||||||||||||||||||||||| |||| |||
Sbjct 594 TGAGATATGGCTCAACGAATTTGTCTCTCGGAGCTACTGTCACTCCTTTTACTGCGGATA 653
Query 659 ACGAATTGCCAAAGCATGCATGGCTTGTAAGCAAGATGGGAA-GTCTTACAGTAGGAGTA 717
|||||| ||||||||| ||||||||||||||||||||||||| || |||||||||||||
Sbjct 654 ACGAATCGCCAAAGCAGGCATGGCTTGTAAGCAAGATGGGAAGGT-TTACAGTAGGAGTG 712
Query 718 CAATATGAGCCGCTACATGGAAGCAAAGATTTGGCAAAGTACACAGACCCAAGAAACTGG 777
|| ||||||||||||||||||||| |||||||||| ||||||||||||| ||||||||||
Sbjct 713 CAGTATGAGCCGCTACATGGAAGCGAAGATTTGGCCAAGTACACAGACCTAAGAAACTGG 772
Query 778 AGTTGTGCTGCTGGCTATGGAGTAGGGTCACAAAGCCCCTTGACTCCTTCTTTTAACATT 837
||||||||||||||||||||||||||||||||||||||| ||| |||||| |||||||||
Sbjct 773 AGTTGTGCTGCTGGCTATGGAGTAGGGTCACAAAGCCCCCTGAGTCCTTCGTTTAACATT 832
Query 838 GGCATTGAACTAGCAAGAAGCTCTCAGTTTATTGCTTCGTTCTACCAACACGTAGTGGTC 897
|||||||||||||||||||||||||||||||| ||| |||||||||||||| | |||||
Sbjct 833 GGCATTGAACTAGCAAGAAGCTCTCAGTTTATCGCTACGTTCTACCAACACATCGTGGTA 892
Query 898 CAAAGACGGGTGCAAAATCCTTTCGAAGAAAACCAAGTAGTTGGAATCACAAACTACATT 957
|||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 893 CAAAGACGGGTGAAAAATCCTTTTGAAGAAAACCAAGTAGTTGGAATCACAAACTACATT 952
Query 958 GATTTTGGTTTTGAGCTACAATCGAGGGTTGATGATTCCAAGACGCCACCCAATGCCCCA 1017
||||| ||||||||| |||||||||||||||||||||||| |||||||| ||||||||||
Sbjct 953 GATTTAGGTTTTGAGTTACAATCGAGGGTTGATGATTCCACGACGCCACACAATGCCCCA 1012
Query 1018 GATTCTTTATTGCAGGTGGCTGCGTCTTGGCAGGCCAACAAGAACTTTTTGCTGAAGGGT 1077
||||||||||||||| |||||||||||||||||||||| |||||||| ||||| ||||||
Sbjct 1013 GATTCTTTATTGCAGATGGCTGCGTCTTGGCAGGCCAATAAGAACTTCTTGCTAAAGGGT 1072
Query 1078 AAAGTCGGAGCTCATAGCTCAACATTGTCATTAGCATTCAAGTCGTGGTGGAAACCGTCT 1137
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1073 AAAGTCGGAGCTCATAGCTCAACATTGTCATTAGCATTCAAGTCGTGGTGGAAACCGTCT 1132
Query 1138 TTCGCATTCAATATTTCAGCAACAACTAATCATAGGACTGGAAATGTCCAATGTGGGTTC 1197
||||||||||||||||||||||||||||||||| | |||||||||||| ||||||||||
Sbjct 1133 TTCGCATTCAATATTTCAGCAACAACTAATCATCGCACTGGAAATGTCGAATGTGGGTTT 1192
Query 1198 GGTCTACGTGTTGATAACTTAAGAGAAGCCAGTTACCAAAGAGCTGATCCAAACTTTGTA 1257
||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1193 GGTCTCCGTGTTGATAACATAAGAGAAGCCAGTTACCAAAGAGCTGATCCAAACTTTGTA 1252
Query 1258 ATGCTGACACCGAACAAAGAACATTTAGCTGAAGGGATTGTGTGGAAAATGGGGAAGAGA 1317
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1253 ATGCTAACACCGAACAAAGAACATTTAGCTGAAGGGATTGTGTGGAAAATGGGGAAGAGG 1312
Query 1318 CCAATGTATCAAGCCGATGTGGACGCAGAGAATTTTAGTGAGCTGCCAAAAGAACTTAGA 1377
||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct 1313 CCAATGTATCAAGCCGATGTGGACGCAGAGAATTTCAGTGAACTGCCAAAAGAACTTAGA 1372
Query 1378 CCGTCCCAGAAGATTCTCTAAACTACACCATTAATCTTTTTGCACTTTTATCTAGTAGAT 1437
||||||||||||||||||||||||| ||| ||||| ||||||||||||||||||||||||
Sbjct 1373 CCGTCCCAGAAGATTCTCTAAACTAAACCTTTAATTTTTTTGCACTTTTATCTAGTAGAT 1432
Query 1438 TTAGATATCAACCAAGTCAAGTATTTAATAAGTTCGACGAAAGAAGA-ATTACTTAGGAA 1496
|||||| || |||||||||||| |||||||||||||||||||||||| || | |||| ||
Sbjct 1433 TTAGATCTCTACCAAGTCAAGTTTTTAATAAGTTCGACGAAAGAAGATAT-ATTTAGTAA 1491
Query 1497 TAACCATTTTTACTCTTATGGAGTACAAGTGTTTAGTGTTCAAAATTAGGAGTGGATTAT 1556
||||||||||||||| ||||||| |||||||||| ||||||||| ||||||| | |||||
Sbjct 1492 TAACCATTTTTACTCATATGGAGCACAAGTGTTTTGTGTTCAAA-TTAGGAGCGAATTAT 1550
Query 1557 CTGGTTT 1563
|||||||
Sbjct 1551 CTGGTTT 1557
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63458348170
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5