BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G27950.1
Length=1211
Score E
Sequences producing significant alignments: (Bits) Value
Ahg484583 jgi|Araly1|484583|fgenesh2_kg.5__575__AT3G27950.1 1751 0.0
> Ahg484583 jgi|Araly1|484583|fgenesh2_kg.5__575__AT3G27950.1
Length=1113
Score = 1751 bits (948), Expect = 0.0
Identities = 1058/1113 (95%), Gaps = 0/1113 (0%)
Strand=Plus/Plus
Query 1 ATGGCTATTTCTAAAATAACCCTTGCAATCATCGTTTTACTTCTAGGGTTCACTGAGAAA 60
|||||||| |||||||||||||||| |||||||||||||||||| ||| ||| ||| ||
Sbjct 1 ATGGCTATCTCTAAAATAACCCTTGGAATCATCGTTTTACTTCTCGGGCTCATTGATAAG 60
Query 61 TTATCTGCCTTGTCGAGTAGTTGTAATTTTCCGGCAGTTTTTAACTTTGGAGATTCAAAT 120
||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 TTATCTGCCGTATCGAGTAGTTGTAATTTTCCGGCAGTTTTTAACTTTGGAGATTCAAAT 120
Query 121 TCTGACACCGGAGCTATCTCTGCGGCCATTGGAGAGGTTCCTCCACCTAATGGAGTTGCA 180
||||| ||||||||||||||||| ||||| ||||| ||||||||||| |||||||||||
Sbjct 121 TCTGATACCGGAGCTATCTCTGCAGCCATCGGAGAAGTTCCTCCACCAAATGGAGTTGCC 180
Query 181 TTTTTTGGAAGATCCGCCGGAAGACACTCCGATGGCCGTCTCATTATAGATTTCATTACC 240
||||||||||||||||||||| |||| ||||||||||| ||||||||||||||||| ||
Sbjct 181 TTTTTTGGAAGATCCGCCGGACGACATTCCGATGGCCGCCTCATTATAGATTTCATAACT 240
Query 241 GAAAATCTTACTTTGCCGTATTTAACACCATACTTGGATTCGGTTGGAGCTAATTACCGG 300
|||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 241 GAAAATCTCACTTTGCCGTATTTAACACCGTACTTGGATTCGGTTGGAGCTAATTACCGG 300
Query 301 CATGGTGCTAATTTTGCGACGGGCGGTTCTTGCATCCGCCCCACACTTGCTTGTTTTAGC 360
|||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||
Sbjct 301 CATGGTGCTAATTTTGCGACTGGCGGTTCTTGCATCCGCCCCACACTTTCTTGTTTTAGC 360
Query 361 CCATTCCATCTTGGGACTCAAGTGTCCCAATTCATTCACTTTAAGACTCGTACCTTGTCT 420
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 CAATTCCATCTTGGGACTCAAGTGTCCCAATTCATTCACTTTAAGACTCGTACCTTGTCT 420
Query 421 CTCTACAACCAAACCAACGATTTCTCAAAAGCTCTTTATACATTGGATATCGGCCAAAAC 480
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 421 CTCTACAACCAAACCAACGATTTCTCAAAAGCTCTTTATACATTGGATATTGGCCAGAAC 480
Query 481 GATCTCGCGATTGGGTTCCAAAACATGACAGAGGAACAACTCAAAGCAACTATACCCTTA 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 481 GATCTCGCGATTGGGTTCCAAAACATGACAGAGGAACAACTCAAAGCAACTATACCCGCA 540
Query 541 ATCATTGAAAACTTCACCATTGCCTTAAAATTGTTATACAAAGAAGGAGCAAGATTCTTC 600
|| || ||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 541 ATAATCGAAAACTTCACCATTGCCTTAAAATTGTTGTACAAAGAAGGAGCAAGATTCTTC 600
Query 601 TCAATTCATAACACCGGACCGACAGGCTGTTTACCGTATCTTCTGAAAGCTTTTCCCGCT 660
|||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 601 TCAATTCATAACACCGGACCGACAGGCTGTCTACCGTATCTTTTGAAAGCTTTTCCCGCT 660
Query 661 ATACCGCGAGATCCCTACGGTTGTTTGAAGCCTCTGAACAATGTGGCAATTGAGTTCAAC 720
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 ACACCGCGAGATCCCTACGGTTGTTTGAAGCCTCTGAACAATGTGGCAATTGAGTTCAAC 720
Query 721 AAACAACTCAAGAACAAAATCACTCAACTAAAGAAAGAGTTACCTTCTTCTTTCTTTACT 780
|||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||
Sbjct 721 AAACAACTCAAGAACAAAATCAATGAACTAAAGAAAGAGTTACCTTCTTCTTTCTTTACT 780
Query 781 TATGTTGATGTCTACTCGGCCAAATACAACTTGATCACCAAAGCAAAGGCTCTAGGTTTT 840
|||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||
Sbjct 781 TATGTTGATGTCTACTCGGCCAAATACAACTTGATCACCAAAGCAAAGACTCTCGGTTTT 840
Query 841 ATTGATCCTTTTGACTATTGTTGCGTTGGGGCGATCGGACGTGGAATGGGATGTGGGAAG 900
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 841 GTTGATCCTTTTGACTATTGTTGCGTTGGGGCGATCGGACGTGGAATGGGATGTGGGAAG 900
Query 901 ACAATATTTCTAAATGGGACAGAACTCTATAGTTCTTCCTGCCAAAACCGTAAAAATTTC 960
|||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 901 ACAATATTTCCAAATGGGACAGAACTCTATAGTTCTTCCTGCGAAAACCGTAAAAATTTC 960
Query 961 ATAAGTTGGGATGGCATACATTACACCGAAACCGCGAATATGCTAGTCGCAAACCGAATC 1020
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 961 ATAAGTTGGGATGGCATACATTACACCGAAACCGCGAATATGCTAGTCGCAAACCGCATC 1020
Query 1021 CTCGATGGTTCGATATCGGATCCACCTCTCCCTACCCAAAAAGCATGTAAACTCACGAAA 1080
|||||||| |||||||| |||||||||||||| |||||||||| || ||||| ||||||
Sbjct 1021 CTCGATGGGTCGATATCCGATCCACCTCTCCCAACCCAAAAAGGTTGCAAACTGACGAAA 1080
Query 1081 AAATAAGTTGCCATGATATAAACTAATAAATGT 1113
|||| |||||||| | ||| || ||||||||||
Sbjct 1081 AAATGAGTTGCCAAGCTATGAATTAATAAATGT 1113
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45213779562
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5