BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G27970.1
Length=1074
Score E
Sequences producing significant alignments: (Bits) Value
Ahg896718 jgi|Araly1|896718|Al_scaffold_0005_684 1674 0.0
> Ahg896718 jgi|Araly1|896718|Al_scaffold_0005_684
Length=1074
Score = 1674 bits (906), Expect = 0.0
Identities = 1019/1075 (95%), Gaps = 2/1075 (0%)
Strand=Plus/Plus
Query 1 ATGGATTACCGATCATCAATGGAGTCTTCGGAAACTCTAAGGAACAAGTGTGCCGCCTGT 60
||||||||| ||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 1 ATGGATTACAGATCATCAATGGAGTCTTCGGAAACCCTAAGGAACAAGTGTGCCGCTTGT 60
Query 61 TACAGGCAATTCAACAAACTGGAACATTTGGTGGAGCACATGAAGATCTCTTATCATTCG 120
|| ||||||||||||||| |||||||||| || |||||||||||||||||||||||||||
Sbjct 61 TATAGGCAATTCAACAAAATGGAACATTTAGTCGAGCACATGAAGATCTCTTATCATTCG 120
Query 121 GGTCATGAACCTACTTGTGGCGTTTGCAAGAAACATTGCAGGTCTTTTGAGTCCCTCCGA 180
||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||
Sbjct 121 GGTCATGAACCTACTTGTGGCGTTTGCAAGAAACATTGCCGATCTTTTGAGTCCCTCCGG 180
Query 181 GAACATCTCATAGGGCCATTGCCAAAACAAGAATGCAAGAACATTTTCAGCCTTCGTGGA 240
||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||
Sbjct 181 GAACATCTCATAGGGCCGTTGCCAAAACAAGAATGCAAGAACATTTTCAGCCTTCGCGGA 240
Query 241 TGCAGATTTTGCATGACGATACTCGAAAGCCCGAATTCTCGTAGAATCCATCAAGAGAGA 300
|||||||||||||||||||| ||||||||||||||| ||||||| |||||||||||||||
Sbjct 241 TGCAGATTTTGCATGACGATCCTCGAAAGCCCGAATGCTCGTAGGATCCATCAAGAGAGA 300
Query 301 TGCCAATTCTCGAGCGTCAACTCTGGATTGACGACTCGAATGGCAGCTTTAGGCT-TAAG 359
|||||||| |||||||| ||||||||| |||||||||| ||||| |||||||| | ||||
Sbjct 301 TGCCAATTTTCGAGCGTGAACTCTGGACTGACGACTCGCATGGCGGCTTTAGG-TCTAAG 359
Query 360 AGATAAGGCCATGATCGACTACACGTCATCACGGTCTCCAAGAGTGGTTGCACTCTCTTG 419
|||||||||||||||||||||||||| || ||||||||| |||||||||||||||||||
Sbjct 360 GGATAAGGCCATGATCGACTACACGTCCTCGCGGTCTCCACGAGTGGTTGCACTCTCTTG 419
Query 420 CAAGATGGTAGGAGGAGGAAGTGACGGGTCGTTGGATCTATGCGCGAGGGTTTGCATAAC 479
||||||||||||||||||||| ||||||||||||||||| || |||||||||||||||||
Sbjct 420 CAAGATGGTAGGAGGAGGAAGCGACGGGTCGTTGGATCTGTGTGCGAGGGTTTGCATAAC 479
Query 480 GGATGAGAGTGACAACGTTATCTTTCACACGTATGTGAAACCTTCGATGGCCGTGACTAG 539
||||||||||||||||||| | || |||||||||||||||||||||||| |||| || ||
Sbjct 480 GGATGAGAGTGACAACGTTGTGTTCCACACGTATGTGAAACCTTCGATGACCGTAACAAG 539
Query 540 CTATAGGTACGAGACGACAGGGATACGCCCGGAAAATCTAAGGGACGCAATGCCATTAAA 599
|||||||||||||||||| |||||||| ||||| |||||||||||||||||||| || ||
Sbjct 540 CTATAGGTACGAGACGACGGGGATACGTCCGGAGAATCTAAGGGACGCAATGCCGTTGAA 599
Query 600 ACAAGTACAAAGAAAGATTCAAGAGTTTCTTTGTAATGGAGAACCCATGTGGAAGATTCG 659
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 600 ACAAGTACAAAGAAAGATTCAAGAGTTTCTTTGTAATGGAGAACCTATGTGGAAGATTCG 659
Query 660 TCCAAGAGGTGGAAAAGCGAGGATTCTCGTGGGGCATGGCCTCGATCACGATCTTGACCG 719
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
Sbjct 660 TCCAAGAGGTGGAAAAGCGAGGATTCTCGTGGGACATGGCCTCGATCACGATCTTGACTG 719
Query 720 CCTTCAACTTGAATATCCTTCTTCCATGATAAGGGATACTGCGAAATACCCACCGTTGAT 779
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 720 CCTTCAACTTGAATATCCTTCTTCCATGATAAGGGATTCTGCGAAATACCCACCGTTGAT 779
Query 780 GAAAACAAGCAAGCTGAGCAACTCTCTCAAGTACTTAACCCAAGCCTATCTCGGGTATGA 839
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 780 GAAAACAAGCAAGCTGAGCAACTCTCTCAAGTACTTAACCCAAGCCTATCTCGGGTATGA 839
Query 840 TGTTCATTTTGGGATACAAGACCCTTATGAAGATTGTGTAGCGACGATGAGGCTTTACAC 899
|||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 840 TGTTCATTTTGGGATACAAGACCCGTATGAAGATTGTGTAGCGACAATGAGGCTTTACAC 899
Query 900 GAGAATGAGATATCAGAAACACAAGATTGAAGCTTACCCTTTAGCCGCCGATGCGCAGAA 959
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 900 GAGAATGAGATATCAGAAACACAAGATTGAAGCTTACCCTTTAGCCGCCGATGCGCAGAA 959
Query 960 CCGTAGCAACCAGGTGGCTTGGAGGCAGAGTGAGGCCGAGAGGATGTCTCCTGATGAAAT 1019
||||||||||||||||| |||||||||||| || | ||||||||||||||||||||||||
Sbjct 960 CCGTAGCAACCAGGTGGTTTGGAGGCAGAGCGAAGTCGAGAGGATGTCTCCTGATGAAAT 1019
Query 1020 GCTCTCAATCTCTCGTTCCGACTATTACTGCTGGTGCTTAGACTCACTAGCTTAA 1074
|||||| ||||||||||| |||||||| ||||||||||| ||||| || ||||||
Sbjct 1020 GCTCTCCATCTCTCGTTCTGACTATTATTGCTGGTGCTTGGACTCCCTCGCTTAA 1074
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39990939933
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5