BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G27980.1
Length=1494
Score E
Sequences producing significant alignments: (Bits) Value
Ahg914035 jgi|Araly1|914035|Al_scaffold_0001_4289 1240 0.0
Ahg931451 jgi|Araly1|931451|scaffold_303908.1 1131 0.0
Ahg914026 jgi|Araly1|914026|Al_scaffold_0001_4280 891 0.0
Ahg914199 jgi|Araly1|914199|Al_scaffold_0001_4453 665 0.0
Ahg337083 jgi|Araly1|337083|fgenesh1_pg.C_scaffold_1003648 315 8e-85
Ahg907931 jgi|Araly1|907931|Al_scaffold_0002_1012 255 5e-67
> Ahg914035 jgi|Araly1|914035|Al_scaffold_0001_4289
Length=1533
Score = 1240 bits (671), Expect = 0.0
Identities = 1028/1197 (86%), Gaps = 38/1197 (3%)
Strand=Plus/Plus
Query 315 CCACACTTGGCTTAGTAGCGTTCTTACTAGCTACATCACATGTATCGACGAAATTGGTGA 374
|||||||||||| ||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct 336 CCACACTTGGCTCAGTGGTGTTCTTACTAGCTACATCACATGTATCGACGAAATTGGTGA 395
Query 375 AGGTGCCTATAAACGCCGGGTCGAGCCAAAGCTTGAAAACCTCATTTCTAGGGCAAGAGT 434
||||||||||||||| |||||||||||| |||||| ||||||||||||||||||||||
Sbjct 396 AGGTGCCTATAAACGTCGGGTCGAGCCAGTGCTTGAGGACCTCATTTCTAGGGCAAGAGT 455
Query 435 AGTTTTGGCTC-TTTTTATCTCCATTTCACTGAGAGACAACACCGAACTTATCTCGGTGA 493
|| |||||| | |||||||||| ||||| | || |||| |||||||||||| ||||||
Sbjct 456 AGCTTTGGC-CATTTTTATCTCTATTTCGCCGATAGACGACACCGAACTTAAGTCGGTGG 514
Query 494 TTCCCAATGGCCCTTCTTGGTTATTC-CATGTTGACAAGAAAGATCTATATCTCAA---T 549
||||||||||||| ||||||||| || | |||||||||||| ||||||||||||| |
Sbjct 515 TTCCCAATGGCCCATCTTGGTTA-TCTAACGTTGACAAGAAATATCTATATCTCAATCCT 573
Query 550 ---G--CT---G-AGATTGCTGATGTTGTGGTCGCGAAGGATGGGACCGGAAAGTACAGC 600
| || | ||||||| |||||||||||||| |||||||||| |||| | |||| |
Sbjct 574 GAGGTTCTAAAGAAGATTGCCGATGTTGTGGTCGCAAAGGATGGGATCGGAGATTACAAC 633
Query 601 ACAGTGAATGCGGCCATTGCAGCGGCACCTCAACACAGCCAAAAGAGATTCGTCATCTAT 660
||| |||||| ||||||||||| || |||| || |||| | |||||||||||||||||||
Sbjct 634 ACATTGAATGAGGCCATTGCAGTGGTACCTGAATACAGTCGAAAGAGATTCGTCATCTAT 693
Query 661 ATAAAGACAGGCATTTATGATGAAATCGT-CGTCATTGAGAATACGAAACCCAATTTAAC 719
|||||||||||| | ||||||||||| || ||| |||| || ||||||| ||||||||||
Sbjct 694 ATAAAGACAGGCGTCTATGATGAAATTGTCCGT-ATTGGGAGTACGAAAGCCAATTTAAC 752
Query 720 TCTTATAGGTGATGGTCAAGATTTAACCATCATCACAGGCAATTTAAGCGCTAGCAATGT 779
||| || |||||||||||||||| |||||||||||| |||||||||||| || |||
Sbjct 753 TCTCATCGGTGATGGTCAAGATTCAACCATCATCACGGGCAATTTAAGCTATAATGATGG 812
Query 780 TAGAAGAACG-TACAACACCGCAACTGTTGCTTCTAATGGTAATGGATTCATCGGAGTAG 838
|| || |||| | ||| ||||||||||||||||||||||||||||| ||||||||| |||
Sbjct 813 TAAAACAACGTTTCAA-ACCGCAACTGTTGCTTCTAATGGTAATGGTTTCATCGGAATAG 871
Query 839 ACATGTGCTTTCGAAACACGGCCGGACCGGCAAAAGGACCAGCTGTTGCCCTCCGTGTGA 898
|||||||||| || |||||||| ||||||||||| |||||||||||||||||||||||||
Sbjct 872 ACATGTGCTTCCGGAACACGGCTGGACCGGCAAAGGGACCAGCTGTTGCCCTCCGTGTGA 931
Query 899 GTGGTGATATGTCCGTCATTTATAGATGTCGTGTCGA-GGGATATCAGGATGCCTTGTAT 957
|||||||||||||||||||||| |||||||| |||| ||| ||||||||||| ||||||
Sbjct 932 GTGGTGATATGTCCGTCATTTACCGATGTCGTATCGATGGG-TATCAGGATGCGTTGTAT 990
Query 958 CCTCATAGTGACCGCCAGTTTTATAGGGAGTGCTTTATTACCGGCACTGTAGATTTTATA 1017
|||| || |||||||| |||||||||||||||||||||||||||||| |||||||||
Sbjct 991 TCTCAAAGAGACCGCCAATTTTATAGGGAGTGCTTTATTACCGGCACTACAGATTTTATC 1050
Query 1018 TGTGGAAACGCGGTGGCGGTCTTTCAATTCTGCCAGATTGTAGCAAGAC-AGCCTAAGAT 1076
||||||||||| | ||| ||||| ||||||||||| ||||||||||||| | || | ||
Sbjct 1051 TGTGGAAACGCCGCGGCCGTCTTCCAATTCTGCCAAATTGTAGCAAGACTA-CCGATGAA 1109
Query 1077 GGGGCAGAGCAATGTCATAACCGCTCAATCACGCGCGACTAAGGACGTCAAATCGGGCTT 1136
|| || |||||||| ||||||||||| |||||| | | || ||| | ||| ||||||||
Sbjct 1110 AGGACATAGCAATGTGATAACCGCTCAGTCACGCACAAGTATGGAAGACAACTCGGGCTT 1169
Query 1137 CTCAATTCAAAACTGCAACATCACAACAAGTTCGGATCTAGATAC----A--GCAACCGT 1190
||| |||||||| ||||| ||||| ||||||| ||||||||| | | ||||||||
Sbjct 1170 CTCCATTCAAAAATGCAATATCACTGCAAGTTCTGATCTAGATCCGGTTAAAGCAACCGT 1229
Query 1191 AAAAACGTATCTTGGAA-GACCTTGGAGGAGATT-TTCAACAGTCGCGGTTCTGCAATCT 1248
|| |||||| |||| | || ||||||| ||| ||||||||| | |||||| ||||||
Sbjct 1230 GAAGACGTAT-TTGGGTCGTCCATGGAGGA-ATTATTCAACAGTTGTGGTTCTACAATCT 1287
Query 1249 TTCATCGGTGATTTAGTTGATCCCGCAGGCTGGACTCCTTGGAAAGGAGAAACTGGTCTA 1308
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1288 TTCATCGGTGATTTAGTTGATCCCGCAGGCTGGACTCCTTGGAAAGGAGAAACTGGTCTA 1347
Query 1309 TCAACTCTCCACTACCGCGAATATCAAAATAGGGGTCCGGGAGCTGTGACTAGCAGAAGG 1368
||||||||| ||||| ||||||||||||| || |||| |||||||||||||||| ||||
Sbjct 1348 TCAACTCTCTACTACGGCGAATATCAAAACAGCGGTCTAGGAGCTGTGACTAGCAAAAGG 1407
Query 1369 GTGAAGTGGTCAGGATTTAAAGTTATGAAAGATCCTAAAAAGGCTACAGA-ATTCACTGT 1427
|| |||||| |||| |||| |||||| | |||||||||| |||||||| | ||| |||||
Sbjct 1408 GTAAAGTGGACAGGGTTTAGAGTTATTACAGATCCTAAAGAGGCTACA-ACATTTACTGT 1466
Query 1428 -AGCCAAGCTCTTAGATGGAGAAACTTGGCTGAAAGAAAGTCGAATTCCATATGAAA 1483
| ||||||| ||||| |||||| | |||||||||| |||| || |||| || ||||
Sbjct 1467 TA-CCAAGCTATTAGACGGAGAATCGTGGCTGAAAGCAAGTGGAGTTCCGTACGAAA 1522
Score = 320 bits (173), Expect = 2e-86
Identities = 234/263 (89%), Gaps = 5/263 (2%)
Strand=Plus/Plus
Query 43 ATGGTAATTGGCGTTAGCAAAGAATATTGTGATGACAAACAGTCATGTCAAAACCTTTTG 102
||||| || || ||| |||||| ||| ||| ||||||||||||||||||| ||||||
Sbjct 1 ATGGTGATCGGAGTTTGCAAAGGATA---TGACAACAAACAGTCATGTCAAAATCTTTTG 57
Query 103 TTGGAGCTTAAGGCGGGT-TCATCGTCACTCTCGGAGATTAGACGTCGTGACTTATTGAT 161
|||||||| ||| | ||| || |||||||||||| |||| ||| ||||||| ||||||||
Sbjct 58 TTGGAGCTCAAGAC-GGTATCCTCGTCACTCTCGAAGATGAGATGTCGTGATTTATTGAT 116
Query 162 CATCGTTTTGAAGAATTCCGTACGGAGGATCGACATGGCTATGATTGGTGTGATGGATGA 221
||||||||||||||||||||| |||||||||| ||||||||||||||||||||||| ||
Sbjct 117 CATCGTTTTGAAGAATTCCGTGTGGAGGATCGATATGGCTATGATTGGTGTGATGGAAGA 176
Query 222 TACAAAACAACATGAAGAGATGGAGAATGATATGCTTGGTGTGAAGGAGGACACAAATCT 281
|||||||| || ||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 177 TACAAAACTACTTGAGGAGATGGAGAATGATATGCTTGGTGTGAAGGAGGACACAAATCT 236
Query 282 ATTTGAGGAGATGATGGAGTCGG 304
|||||||| |||||||||||||
Sbjct 237 GTTTGAGGAAATGATGGAGTCGG 259
> Ahg931451 jgi|Araly1|931451|scaffold_303908.1
Length=1684
Score = 1131 bits (612), Expect = 0.0
Identities = 1003/1189 (84%), Gaps = 38/1189 (3%)
Strand=Plus/Plus
Query 315 CCACACTTGGCTTAGTAGCGTTCTTACTAGCTACATCACATGTATCGACGAAATTGGTGA 374
|||||||||| ||||| ||||||||||||||||||||||||||| |||||||||||||||
Sbjct 467 CCACACTTGGATTAGTGGCGTTCTTACTAGCTACATCACATGTACCGACGAAATTGGTGA 526
Query 375 AGGTGCCTATAAACGCCGGGTCGAGCCAAAGCTTGAAAACCTCATTTCTAGGGCAAGAGT 434
||||||||||||||| ||||| |||||| ||||||| ||||||||||||||||||||||
Sbjct 527 AGGTGCCTATAAACGTCGGGTTGAGCCAGAGCTTGAGGACCTCATTTCTAGGGCAAGAGT 586
Query 435 AGTTTTGGCTC-TTTTTATCTCCATTTCACTGAGAGACAACACCGAACTTATCTCGGTGA 493
|| |||||| | |||| ||||||||||||| ||||||| |||||||||||| ||||||
Sbjct 587 AGCTTTGGC-CATTTTCATCTCCATTTCACCGAGAGACGACACCGAACTTAAGTCGGTGG 645
Query 494 TTCCCAATGGCCCTTCTTGGTTATTCC-ATGTTGACAAGAAAGATCTATATC----TC-- 546
|| |||||||||| || |||||| ||| | |||||||| ||| ||||||||| ||
Sbjct 646 TTTCCAATGGCCCGTCGTGGTTA-TCCAACGTTGACAAAAAATATCTATATCTTTATCGT 704
Query 547 -A-A-TGCT---G-AGATTGCTGATGTTGTGGTCGCGAAGGATGGGACCGGAAAG-TACA 598
| | | || | ||||||| |||||||||||||||||||| |||| || ||| ||||
Sbjct 705 GAGACT-CTAAAGAAGATTGCCGATGTTGTGGTCGCGAAGGACGGGAGTGG-AAGTTACA 762
Query 599 GCACAGTGAATGCGGCCATTGCAGCGGCACCTCAACACAGCCAAAAGAGATTCGTCATCT 658
||||||||||||||||||||||||||||||| || ||||| |||||||||||||||||
Sbjct 763 ACACAGTGAATGCGGCCATTGCAGCGGCACCTAAATTCAGCCGAAAGAGATTCGTCATCT 822
Query 659 ATATAAAGACAGGCATTTATGATGAAATCGTCGTCATTGAGAATACGAAACCCAATTTAA 718
|||||||||||||| | ||||||||||||||| ||||| || || |||| |||||||||
Sbjct 823 ATATAAAGACAGGCGTCTATGATGAAATCGTCAACATTGGGATTAAGAAAGCCAATTTAA 882
Query 719 CTCTTATAGGTGATGGTCAAGATTTAACCATCATCACAGGCAATTTAAGCGCTAGCAATG 778
|||| || ||||| ||||||||| ||| |||||||| || ||||||||| |||| |||
Sbjct 883 CTCTCATCGGTGACAGTCAAGATTCAACTATCATCACGGGTAATTTAAGCTATAGCTATG 942
Query 779 TTAGAA-GAACGTACAACACCGCAACTGTTGCTTCTAATGGTAATGGATTCATCGGAGTA 837
|| || | || | | |||| ||||||||||||||||||||| | |||||||||||| ||
Sbjct 943 GTAAAACG-ACTTTCTACACTGCAACTGTTGCTTCTAATGGTGACGGATTCATCGGAATA 1001
Query 838 GACATGTGCTTTCGAAACACGGCCGGACCGGCAAAAGGACCAGCTGTTGCCCTCCGTGTG 897
|||||||||||||||||||||| ||| ||||| |||||||||||||||||||||||||||
Sbjct 1002 GACATGTGCTTTCGAAACACGGTCGGGCCGGCGAAAGGACCAGCTGTTGCCCTCCGTGTG 1061
Query 898 AGTGGTGATATGTCCGTCATTTATAGATGTCGTGTCGAGGGATATCAGGATGCCTTGTAT 957
|||||||||||||| ||||| | ||||| || ||||||| ||||||||||| ||||||
Sbjct 1062 AGTGGTGATATGTCTATCATTCACCGATGTTGTATCGAGGGGTATCAGGATGCGTTGTAT 1121
Query 958 CCTCATAGTGACCGCCAGTTTTATAGGGAGTGCTTTATTACCGGCACTGTAGATTTTATA 1017
|||| | |||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1122 TCTCACAAACACCGCCAGTTTTATAGGGAGTGCTTTATTACCGGCACTATAGATTTTATT 1181
Query 1018 TGTGGAAACGCGGTGGCGGTCTTTCAATTCTGCCAGATTGTAGCAAGACAGCCTAAGATG 1077
|||||||| || | ||||||||| ||||||||||| ||||| |||||| | |||| || |
Sbjct 1182 TGTGGAAATGCTGCGGCGGTCTTCCAATTCTGCCAAATTGTTGCAAGAAAACCTATGAGG 1241
Query 1078 GGGCAGAGCAATGTCATAACCGCTCAATCACGCGCGACTAAG-GACGTCAAATCGGGCTT 1136
||||| |||||||| ||||||||||| ||||||| | | || | || ||| || |||||
Sbjct 1242 GGGCATAGCAATGTGATAACCGCTCAGTCACGCGTAAGTGAGAG-CGACAACTCCGGCTT 1300
Query 1137 CTCAATTCA-AAACTGCAACATCACAACAAGTTCGGATCTAGATAC----AG--CAACCG 1189
||||||||| ||| ||||||||||| ||||||| ||| ||||| | | ||||||
Sbjct 1301 CTCAATTCAGAAA-TGCAACATCACTGCAAGTTCCGATATAGATCCTCTTAAATCAACCG 1359
Query 1190 TAAAAACGTATCTTGGAAGACCTTGGAGGAGATTTTCAACAGTCGCGGTTCTGCAATCTT 1249
| || || | |||||| | | ||||||| || ||||||||| || ||||| |||||||
Sbjct 1360 TGAAGACATTTCTTGGTCGTTCATGGAGGAAATATTCAACAGTTGCAGTTCTACAATCTT 1419
Query 1250 TCATCGGTGATTTAGTTGATCCCGCAGGCTGGACTCCTTGGAAAGGAGAAACTGGTCTAT 1309
||| ||||||||||||||||| ||||| |||||||||||| |||||||| ||||||||
Sbjct 1420 TCAACGGTGATTTAGTTGATCATGCAGGGTGGACTCCTTGGCAAGGAGAATTTGGTCTAT 1479
Query 1310 CAACTCTCCACTACCGCGAATATCAAAATAGGGGTCCGGGAGCTGTGACTAGCAGAAGGG 1369
|||||||| ||||| | ||||||||||| || ||||| |||||||||||||||| |||||
Sbjct 1480 CAACTCTCTACTACGGAGAATATCAAAACAGAGGTCCAGGAGCTGTGACTAGCAAAAGGG 1539
Query 1370 TGAAGTGGTCAGGATTTAAAGTTATGAAAGATCCTAAAAAGGCTACAGAATTCACTGT-A 1428
| |||||| |||| |||| |||||| | ||||||||| ||||| || |||||||||| |
Sbjct 1540 TAAAGTGGACAGGGTTTAGAGTTATTACGGATCCTAAAGAGGCTGCAAAATTCACTGTTA 1599
Query 1429 GCCAAGCTCTTAGATGGAGAAACT-TGGCTGAAAGA-AAGTCGAATTCC 1475
||||||| ||| ||| ||| | ||||||||| | |||| || ||||
Sbjct 1600 -CCAAGCTATTACTTGGGGAAT-TGTGGCTGAAA-ACAAGTGGAGTTCC 1645
Score = 204 bits (110), Expect = 2e-51
Identities = 208/254 (82%), Gaps = 11/254 (4%)
Strand=Plus/Plus
Query 55 GTTAGCAAAGAATATTGTGATGACAAACAGTCATGTCAAAACCTTTTGTTGGAGCTTAAG 114
||| |||||| ||| ||| |||||| | |||||||||||||||||||||||||| ||
Sbjct 144 GTTTGCAAAGGATA---TGACGACAAAAAATCATGTCAAAACCTTTTGTTGGAGCTCAA- 199
Query 115 GCGGGT-TCATCGTCACTCTCGGAGATTAGACGTCGTGACTTATTGATCATCGTTTTGAA 173
| ||| || |||||||| |||||||| ||| ||||||| |||||||| |||||| ||
Sbjct 200 GATGGTATCCTCGTCACTTTCGGAGATGAGATGTCGTGATTTATTGATTGCCGTTTTAAA 259
Query 174 GAATTCCGT-ACGGAGGATCGACA-TGGCTATGATTGGTGTGATGGATGATACAAAACAA 231
||| || || | ||||||| ||| ||| |||| ||||||||| ||| || || |||| |
Sbjct 260 GAACTCTGTGTC-GAGGATCAACATTGG-TATGCTTGGTGTGAGGGAAGACACGAAACTA 317
Query 232 CATGAAGAGATGGAGAA-TGATATGCTTGGTGTGAAGGAGGACACAAATCTATTTGAGGA 290
| ||| ||| |||| || | | ||||||||| ||| ||||||||||||||||||||||||
Sbjct 318 CTTGAGGAGGTGGA-AAGTAAAATGCTTGGTTTGAGGGAGGACACAAATCTATTTGAGGA 376
Query 291 GATGATGGAGTCGG 304
||||||| ||||||
Sbjct 377 GATGATGAAGTCGG 390
> Ahg914026 jgi|Araly1|914026|Al_scaffold_0001_4280
Length=1548
Score = 891 bits (482), Expect = 0.0
Identities = 708/815 (87%), Gaps = 24/815 (3%)
Strand=Plus/Plus
Query 315 CCACACTTGGCTTAGTAGCGTTCTTACTAGCTACATCACATGTATCGACGAAATTGGTGA 374
|||||||||||| ||| ||||||||||||||||||||||||||||||||| |||||||||
Sbjct 447 CCACACTTGGCTCAGTGGCGTTCTTACTAGCTACATCACATGTATCGACGGAATTGGTGA 506
Query 375 AGGTGCCTATAAACGCCGGGTCGAGCCAAAGCTTGAAAACCTCATTTCTAGGGCAAGAGT 434
||||||||||||||| |||||||||||| ||||||| |||| |||||||||||||||||
Sbjct 507 AGGTGCCTATAAACGTCGGGTCGAGCCAGAGCTTGAGGACCTTATTTCTAGGGCAAGAGT 566
Query 435 AGTTTTGGCTCTTTTTATCTCCATTTCACTGAGAGACAACACCGAACTTATCTCGGTGAT 494
|| |||||| ||||||| |||||||| | ||||||| |||||||||||| |||||| |
Sbjct 567 AGCTTTGGCAATTTTTATTTCCATTTCGCCGAGAGACGACACCGAACTTAAGTCGGTGGT 626
Query 495 TCCCAATGGCCCTTCTTGGTTATTCC-ATGTTGACAAGAAA-GATCTATATCTCAA---T 549
| |||||||||| ||||||||| ||| | |||||||| ||| | |||||||||||| |
Sbjct 627 TTCCAATGGCCCGTCTTGGTTA-TCCAACGTTGACAAAAAATG-TCTATATCTCAATCCT 684
Query 550 ---G--CT---G-AGATTGCTGATGTTGTGGTCGCGAAGGATGGGACCGGAAAGTACAGC 600
| || | ||| ||| |||||||||||||| |||||||||| |||| | |||| |
Sbjct 685 GAGGTTCTAAAGAAGAATGCCGATGTTGTGGTCGCAAAGGATGGGAGCGGACATTACAAC 744
Query 601 ACAGTGAATGCGGCCATTGCAGCGGCACCTCAACACAGCCAAAAGAGATTCGTCATCTAT 660
|||||||||||||||||||||||||||||| || ||| || ||||||||| |||||||||
Sbjct 745 ACAGTGAATGCGGCCATTGCAGCGGCACCTGAATACAACCGAAAGAGATTTGTCATCTAT 804
Query 661 ATAAAGACAGGCATTTATGATGAAATCGT-CGTCATTGAGAATACGAAACCCAATTTAAC 719
|||||||| ||| | |||||||||||||| || ||||| || ||||||| ||||||||||
Sbjct 805 ATAAAGACTGGCGTCTATGATGAAATCGTCCG-CATTGGGATTACGAAAACCAATTTAAC 863
Query 720 TCTTATAGGTGATGGTCAAGATTTAACCATCATCACAGGCAATTTAAG-CGCTAGCAATG 778
||| || |||||||||||||||| |||||||||||| ||||||||||| | || | ||
Sbjct 864 TCTCATCGGTGATGGTCAAGATTCAACCATCATCACGGGCAATTTAAGTTG-TAACGTTG 922
Query 779 TTAGAAGAACGTACAACACCGCAACTGTTGCTTCTAATGGTAATGGATTCATCGGAGTAG 838
|||| ||||| | |||||||||||||||||||||||||| |||| ||||||||| |||
Sbjct 923 GTAGATCAACGTTCTACACCGCAACTGTTGCTTCTAATGGTGATGGTTTCATCGGAATAG 982
Query 839 ACATGTGCTTTC-GAAACACGGCCGGACCGGCAAAAGGACCAGCTGTTGCCCTCCGTGTG 897
|||||||| ||| | ||||||||||||||| |||| |||| ||| |||||||||||||||
Sbjct 983 ACATGTGC-TTCAGGAACACGGCCGGACCGACAAAGGGACAAGCCGTTGCCCTCCGTGTG 1041
Query 898 AGTGGTGATATGTCCGTCATTTATAGATGTCGTGTCGAGGGATATCAGGATGCCTTGTAT 957
||||||||||||||||||||||| |||||||| ||||||| ||||||||| | ||||||
Sbjct 1042 AGTGGTGATATGTCCGTCATTTACCGATGTCGTATCGAGGGGTATCAGGATACGTTGTAT 1101
Query 958 CCTCA-TAGTGACCGCCAGTTTTATAGGGAGTGCTTTATTACCGGCACTGTAGATTTTAT 1016
||||| | | ||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1102 CCTCACCAAT-ACCGCCAATTTTATAGGGAGTGCTTTATTACCGGCACTGTAGATTTTAT 1160
Query 1017 ATGTGGAAACGCGGTGGCGGTCTTTCAATTCTGCCAGATTGTAGCAAGACAGCCTAAGAT 1076
|||||||| || ||||| ||||| ||||| ||||| |||||||||||||| || | ||
Sbjct 1161 CTGTGGAAAGGCCGTGGCTGTCTTCCAATTTTGCCAAATTGTAGCAAGACAACCGAGGAG 1220
Query 1077 GGGGCAGAGCAATGTCATAACCGCTCAATCACGCG 1111
||||||||||||||| ||||||||||| |||||||
Sbjct 1221 GGGGCAGAGCAATGTGATAACCGCTCAGTCACGCG 1255
Score = 309 bits (167), Expect = 4e-83
Identities = 237/270 (88%), Gaps = 7/270 (3%)
Strand=Plus/Plus
Query 37 ATAATAATGGTAATTGGCGTTAGCAAAGAATATTGTGATGACAAACAGTCATGTCAAAAC 96
|||| || ||| || || ||| |||||| ||| ||| ||||||||||||||||||||
Sbjct 106 ATAACAACGGTGATCGGGGTTTGCAAAGGATA---TGACGACAAACAGTCATGTCAAAAT 162
Query 97 CTTTTGTTGGAGCTTAAGGCGGGT-TCATCGTCACTCTCGGAGATTAGACGTCGTGACTT 155
||||||||||||| || | |||| || ||||||||||||||||| | | ||||||| ||
Sbjct 163 ATTTTGTTGGAGCTCAA-GAGGGTATCCTCGTCACTCTCGGAGATGAAATGTCGTGAGTT 221
Query 156 ATTGATCATCGTTTTGAAGAATTCCGTACGGAGGATCGACATGGCTATGATTGGTGTGAT 215
||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||
Sbjct 222 ATTGATCATCGTTTTAAAGAATTCCGTGTGGAGGATCGACATGGCTATGATTGGTGTGAT 281
Query 216 GGATGATACAAAACAACATGAAG-AGATGGAGAATGATATGCTTGGTGTGAAGGAGGACA 274
||| || ||||||| || || || |||||| |||||||||||||||||||||||||||||
Sbjct 282 GGAAGACACAAAACTACTTG-AGCAGATGGGGAATGATATGCTTGGTGTGAAGGAGGACA 340
Query 275 CAAATCTATTTGAGGAGATGATGGAGTCGG 304
||||||||||||| ||||||||||||||||
Sbjct 341 CAAATCTATTTGAAGAGATGATGGAGTCGG 370
Score = 279 bits (151), Expect = 3e-74
Identities = 234/274 (85%), Gaps = 6/274 (2%)
Strand=Plus/Plus
Query 1213 TGGAGG-AGATTTTCAACAGTCGCGGTTCTGCAATCTTTCATCGGTGATTTAGTTGATCC 1271
|||||| || | ||||||||| | |||||| |||||||| ||||||||||||||||||||
Sbjct 1267 TGGAGGAAG-TATTCAACAGTTGTGGTTCTACAATCTTTTATCGGTGATTTAGTTGATCC 1325
Query 1272 CGCAGGCTGGACTCCTTGGAAAGGAGAAACTGGTCTATCAACTCTCCACTACCGCGAATA 1331
||||||||||||||||||| |||||||||||||||||||||||||| ||||| |||||||
Sbjct 1326 CGCAGGCTGGACTCCTTGGGAAGGAGAAACTGGTCTATCAACTCTCTACTACGGCGAATA 1385
Query 1332 TCAAAATAGGGGTCCGGGAGCTGTGACTAGCAGAAGGGTGAAGTGGTCAGGATTTAAAGT 1391
|||||| | ||| || |||||||||||||||| |||||| |||||| |||| |||| |||
Sbjct 1386 TCAAAACATGGGCCCAGGAGCTGTGACTAGCAAAAGGGTAAAGTGGACAGGGTTTAGAGT 1445
Query 1392 TATGAAAGATCCTAAA-AAGGCTACAGAATTCACTGT-AGCCAAGCTCTTAGATGGAGAA 1449
| | | |||||||| ||| | || |||||||||| ||| ||||| ||||||||||||
Sbjct 1446 TCTTACGGATCCTAACGAAGCCG-CAAAATTCACTGTTAGC-AAGCTATTAGATGGAGAA 1503
Query 1450 ACTTGGCTGAAAGAAAGTCGAATTCCATATGAAA 1483
| ||| |||||| |||| || |||| || ||||
Sbjct 1504 TCGTGGTTGAAAGCAAGTGGAGTTCCGTACGAAA 1537
> Ahg914199 jgi|Araly1|914199|Al_scaffold_0001_4453
Length=1605
Score = 665 bits (360), Expect = 0.0
Identities = 569/670 (85%), Gaps = 14/670 (2%)
Strand=Plus/Plus
Query 808 GCTTCTAATGGTAATGGATTCATCGGAGTAGACATGTGCTTTCGAAACACGGCCGGACCG 867
|||||||||||| |||| ||||||||| ||||||||||||| || |||||||||||||||
Sbjct 913 GCTTCTAATGGTGATGGCTTCATCGGAATAGACATGTGCTTCCGGAACACGGCCGGACCG 972
Query 868 GCAAAAGGACCAGCTGTTGCCCTCCGTGTGAGTGGTGATATGTCCGTCATTTATAGATGT 927
||||| |||| |||||||||||||||||||||||||||||| ||||| ||||| ||||
Sbjct 973 GCAAAGGGACAAGCTGTTGCCCTCCGTGTGAGTGGTGATATATCCGTTATTTACCGATGC 1032
Query 928 CGTGTCGAGGGATATCAGGATGCCTTGTATCCTCATAGTGACCGCCAGTTTTATAGGGAG 987
||| ||||||| ||||||||| | ||||||||||| || ||||||| ||||||||||||
Sbjct 1033 CGTATCGAGGGGTATCAGGATACGTTGTATCCTCACAGACACCGCCAATTTTATAGGGAG 1092
Query 988 TGCTTTATTACCGGCACTGTAGATTTTATATGTGGAAACGCGGTGGCGGTCTTTCAATTC 1047
| ||||||||||||||||||||||||||| ||||||||||| | ||| ||||| ||||||
Sbjct 1093 TTCTTTATTACCGGCACTGTAGATTTTATCTGTGGAAACGCCGCGGCCGTCTTCCAATTC 1152
Query 1048 TGCCAGATTGTAGCAAGACAGCCTAAGATGGGGCAGAGCAATGTCATAACCGCTCAATCA 1107
||||| |||||||||||||| || | || ||||||||||||||| ||||||||||| |||
Sbjct 1153 TGCCAAATTGTAGCAAGACAACCGAGGAAGGGGCAGAGCAATGTGATAACCGCTCAGTCA 1212
Query 1108 CGCGCGACTAAGGACGTCAAATCGGGCTTCTCAATTCAAAACTGCAACATCACAACAAGT 1167
|||| | | |||||| ||| ||||||||||| |||||||| ||||| ||||| ||||||
Sbjct 1213 CGCGAAAGTGAGGACGACAACTCGGGCTTCTCCATTCAAAAATGCAATATCACTACAAGT 1272
Query 1168 TCGGATCTAGAT------ACAGCAACCGTAAAAACGTATCTTGGAAGACCTTGGAGGAGA 1221
| ||||||||| | |||||| || || |||| | |||| | || |||| || |
Sbjct 1273 CCTGATCTAGATCTGGTTAAAGCAACTGTGAAGACGTTTTTTGGTCGTCCATGGAAGA-A 1331
Query 1222 TT-TTCAACAGTCGCGGTTCTGCAATCTTTCATCGGTGATTTAGTTGATCCCGCAGGCTG 1280
| ||||||||| | | |||| |||||||| |||||||||||||||||||||||||||||
Sbjct 1332 GTATTCAACAGTTGTGATTCTACAATCTTTTATCGGTGATTTAGTTGATCCCGCAGGCTG 1391
Query 1281 GACTCCTTGGAAAGGAGA-AACTGGTCTATCAACTCTCCACTACCGCGAATATCAAAATA 1339
|||||||||| ||||| | ||||||||||||||||||| ||||| ||||||||||||| |
Sbjct 1392 GACTCCTTGGGAAGGA-ACAACTGGTCTATCAACTCTCTACTACGGCGAATATCAAAACA 1450
Query 1340 GGGGTCCGGGAGCTGTGACTAGCAGAAGGGTGAAGTGGTCAGGATTTAAAGTTATGAAAG 1399
|||||| |||||||||||||||| |||||| |||||| ||| |||| |||| | | |
Sbjct 1451 TGGGTCCAGGAGCTGTGACTAGCAAAAGGGTAAAGTGGAGAGGGTTTAGAGTTCTTACGG 1510
Query 1400 ATCCTAAAAAGGCTACAGAATTCACTGT-AGCCAAGCTCTTAGATGGAGAAA-CTTGGCT 1457
||||||| |||| || |||| ||||| ||| ||||| ||||||||| ||| | |||||
Sbjct 1511 ATCCTAACGAGGCCGCAAAATTAACTGTTAGC-AAGCTATTAGATGGA-AAATCGTGGCT 1568
Query 1458 GAAAGAAAGT 1467
||||| ||||
Sbjct 1569 GAAAGCAAGT 1578
Score = 520 bits (281), Expect = 2e-146
Identities = 440/513 (86%), Gaps = 26/513 (5%)
Strand=Plus/Plus
Query 315 CCACACTTGGCTTAGTAGCGTTCTTACTAGCTACATCACATGTATCGACGAAATTGGTGA 374
|||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||
Sbjct 333 CCACACTTGGCTTAGTGGCGTTCTTACTAGCTACATCACATGTATCGACGGAATTGGTGA 392
Query 375 AGGTGCCTATAAACGCCGGGTCGAGCCAAAGCTTGAAAACCTC-ATTTCTAGGGCAAGAG 433
||||||||||||||| |||||||||||| |||||||| |||| ||| ||| ||||||||
Sbjct 393 AGGTGCCTATAAACGTCGGGTCGAGCCAGAGCTTGAAGACCTTTATT-CTAAGGCAAGAG 451
Query 434 TAGTTTTGGCTCTTTTTATCTCCATTTCACTGAGAGACAACACCGAACTTATCTCGGTGA 493
||| |||||| |||||||||||| ||| | ||||||| |||||||||||| ||||||
Sbjct 452 TAGCTTTGGCAATTTTTATCTCCACTTCTCCGAGAGACGACACCGAACTTAAGTCGGTGG 511
Query 494 TTCCCAATGGCCCTTCTTGGTTATTCCAT-GTTGACAAGAAAGATCTATATCTCAAT--- 549
||||||||||||| |||||||||| ||| |||||||||||| |||||||||| |||
Sbjct 512 TTCCCAATGGCCCGTCTTGGTTAT-CCAACGTTGACAAGAAATATCTATATCTTAATCCT 570
Query 550 G-----CT---GA-GATTGCTGATGTTGTGGTCGCGAAGGATGGGACCGGAAAGTACAGC 600
| || || |||||| ||| |||||||||| || ||||||| |||||| |||| |
Sbjct 571 GAGGTTCTAAAGAAGATTGCCGATTTTGTGGTCGCAAAAGATGGGAGCGGAAATTACAAC 630
Query 601 ACAGTGAATGCGGCCATTGCAGCGGCACCTCAACACAGCCA-AAAGAGATTCGTCATCTA 659
|||||||||||||||||||||||||||||| ||||| | | ||||||||||||||| ||
Sbjct 631 ACAGTGAATGCGGCCATTGCAGCGGCACCTGAACACGGT-AGAAAGAGATTCGTCATTTA 689
Query 660 TATAAAGACAGGCATTTATGATGAAATCGTC-GTCATTGAGAATACGAAACCCAATTTAA 718
||||||||||||| | ||||||||||||||| | ||||| || || |||| |||||||||
Sbjct 690 TATAAAGACAGGCGTCTATGATGAAATCGTCCG-CATTGGGAGTATGAAAACCAATTTAA 748
Query 719 CTCTTATAGGTGATGGTCAAGATTTAACCATCATCACAGGCAATTTAAGC-GCTAGCAAT 777
|||| || |||||||||||||||| |||||||||||| |||||||||||| | || | ||
Sbjct 749 CTCTCATCGGTGATGGTCAAGATTCAACCATCATCACGGGCAATTTAAGCTG-TAACGAT 807
Query 778 GTTAGAAG-AACGTAC-AACACCGCAACTGTTG 808
| || || ||||| | || |||||||||||||
Sbjct 808 GGTA-AATCAACGTTCCAA-ACCGCAACTGTTG 838
Score = 316 bits (171), Expect = 2e-85
Identities = 224/249 (90%), Gaps = 5/249 (2%)
Strand=Plus/Plus
Query 55 GTTAGCAAAGAATATTGTGATGACAAACAGTCATGTCAAAACCTTTTGTTGGAGCTTAAG 114
||| |||||| ||| ||| |||||||||||||||||||| |||||||||||||| ||
Sbjct 10 GTTTGCAAAGGATA---TGACGACAAACAGTCATGTCAAAATCTTTTGTTGGAGCTCAA- 65
Query 115 GCGGGT-TCATCGTCACTCTCGGAGATTAGACGTCGTGACTTATTGATCATCGTTTTGAA 173
| |||| || ||||||||||||||||| ||| || ||||||||||||||||| |||||||
Sbjct 66 GAGGGTATCCTCGTCACTCTCGGAGATGAGATGTTGTGACTTATTGATCATCATTTTGAA 125
Query 174 GAATTCCGTACGGAGGATCGACATGGCTATGATTGGTGTGATGGATGATACAAAACAACA 233
||||||||| |||||||||||||||||||||||||||||||||| || ||||||| ||
Sbjct 126 GAATTCCGTGTGGAGGATCGACATGGCTATGATTGGTGTGATGGAAGACACAAAACTACT 185
Query 234 TGAAGAGATGGAGAATGATATGCTTGGTGTGAAGGAGGACACAAATCTATTTGAGGAGAT 293
||| || ||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 186 TGAGGAAATGGAGAATGATATGCTTGGTGTGAAGGAGGACACAAATCTATTTGAAGAGAT 245
Query 294 GATGGAGTC 302
|||||||||
Sbjct 246 GATGGAGTC 254
> Ahg337083 jgi|Araly1|337083|fgenesh1_pg.C_scaffold_1003648
Length=702
Score = 315 bits (170), Expect = 8e-85
Identities = 238/270 (88%), Gaps = 7/270 (3%)
Strand=Plus/Plus
Query 37 ATAATAATGGTAATTGGCGTTAGCAAAGAATATTGTGATGACAAACAGTCATGTCAAAAC 96
|||| || ||| || || ||| |||||| ||| ||| ||||||||||||||||||||
Sbjct 106 ATAACAACGGTGATCGGAGTTTGCAAAGGATA---TGACGACAAACAGTCATGTCAAAAT 162
Query 97 CTTTTGTTGGAGCTTAAGGCGGGT-TCATCGTCACTCTCGGAGATTAGACGTCGTGACTT 155
|||||||||||||| || | |||| || ||||||||||||||||| | | ||||||| ||
Sbjct 163 CTTTTGTTGGAGCTCAA-GAGGGTATCCTCGTCACTCTCGGAGATGAAATGTCGTGAGTT 221
Query 156 ATTGATCATCGTTTTGAAGAATTCCGTACGGAGGATCGACATGGCTATGATTGGTGTGAT 215
||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||
Sbjct 222 ATTGATCATCGTTTTAAAGAATTCCGTGTGGAGGATCGACATGGCTATGATTGGTGTGAT 281
Query 216 GGATGATACAAAACAACATGAAG-AGATGGAGAATGATATGCTTGGTGTGAAGGAGGACA 274
||| || ||||||| || || || ||||||||||||||||||||||||||||||||||||
Sbjct 282 GGAAGACACAAAACTACTTG-AGCAGATGGAGAATGATATGCTTGGTGTGAAGGAGGACA 340
Query 275 CAAATCTATTTGAGGAGATGATGGAGTCGG 304
||||||||||||| ||||||||||| ||||
Sbjct 341 CAAATCTATTTGAAGAGATGATGGACTCGG 370
Score = 311 bits (168), Expect = 1e-83
Identities = 219/244 (90%), Gaps = 2/244 (1%)
Strand=Plus/Plus
Query 315 CCACACTTGGCTTAGTAGCGTTCTTACTAGCTACATCACATGTATCGACGAAATTGGTGA 374
|||||||||||| ||| ||||||||||||||||||||||||||||||||| |||||||||
Sbjct 447 CCACACTTGGCTCAGTGGCGTTCTTACTAGCTACATCACATGTATCGACGGAATTGGTGA 506
Query 375 AGGTGCCTATAAACGCCGGGTCGAGCCAAAGCTTGAAAACCTCATTTCTAGGGCAAGAGT 434
||||||||||||||| |||||||||||| ||||||| ||||||||||||||||||||||
Sbjct 507 AGGTGCCTATAAACGTCGGGTCGAGCCAGAGCTTGAGGACCTCATTTCTAGGGCAAGAGT 566
Query 435 AGTTTTGGCTCTTTTTATCTCCATTTCACTGAGAGACAACACCGAACTTATCTCGGTGAT 494
|| |||||| ||||||| |||||||| | ||||||| |||||||||||| |||||| |
Sbjct 567 AGCTTTGGCAATTTTTATTTCCATTTCGCCGAGAGACGACACCGAACTTAAGTCGGTGGT 626
Query 495 TCCCAATGGCCCTTCTTGGTTATTCCAT-GTTGACAAGAAAGATCTATATCTCAATGCTG 553
| |||||||||| |||||||||| ||| |||||||| ||| |||||||||||||| |||
Sbjct 627 TTCCAATGGCCCGTCTTGGTTAT-CCAAAGTTGACAAAAAATATCTATATCTCAATCCTG 685
Query 554 AGAT 557
||||
Sbjct 686 AGAT 689
> Ahg907931 jgi|Araly1|907931|Al_scaffold_0002_1012
Length=1095
Score = 255 bits (138), Expect = 5e-67
Identities = 310/388 (80%), Gaps = 32/388 (8%)
Strand=Plus/Plus
Query 55 GTTAGCAAAGAATATTGTGATGACAAACAGTCATGTCAAAACCTTTTGTTGGAGCTTAAG 114
||| |||||| ||| ||||||||||| ||||||||||||||| |||||| |||| |||
Sbjct 13 GTTTGCAAAGGATA---TGATGACAAACCGTCATGTCAAAACCTCTTGTTGAAGCTCAAG 69
Query 115 GCGGGT-TCATCGTCACTCTCGGAGATTAGACGTCGTGACTTATTGATCATCGTTTTGAA 173
| ||| || |||||||| | |||||| ||||||||||||||||||||| |||| |||||
Sbjct 70 AC-GGTATCTTCGTCACTTTTGGAGATGAGACGTCGTGACTTATTGATCTTCGTCTTGAA 128
Query 174 GAATTCCGTACGGAGGATCGACATGGCTATGATTGGTGTGATGG-ATGATACAAAACAAC 232
|| ||||| ||||| ||||||||| |||||||| ||||| || | || ||||||| ||
Sbjct 129 AAACTCCGTGTGGAGGGTCGACATGGATATGATTGATGTGA-GGAAAGACACAAAACTAC 187
Query 233 ATGAAGAGATGGAGAAT-GATA-TGCT-TGGTGTGAAGGAGGACACAAATCTATTTGAGG 289
||| ||||||||| || || | || | || | || |||| | | | |||| || |
Sbjct 188 TTGAGGAGATGGAG-ATGGAGAGTGATATGCT-TGGAGGAAG-CCCTAATC---TT---G 238
Query 290 AGATGATGGAGTCGGAGGAGAA-TTCCCACACTTGGCTTAGTAGCGTTCTTACTAGCTAC 348
||| | | | || | || | |||||||||||| ||| | |||||||||||||||
Sbjct 239 -GAT-CT-TA--C-GA--A-AACGT-CCACACTTGGCTCAGTGGTGTTCTTACTAGCTAC 288
Query 349 ATCACATGTATCGACGAAATTGGTGAAGGTGCCTATAAACGCCGGGTCGAGCCAAAGCTT 408
|||||||||||||||| |||||||||||||| ||||||||| |||||| | ||| |||||
Sbjct 289 ATCACATGTATCGACGGAATTGGTGAAGGTGTCTATAAACGTCGGGTCAACCCAGAGCTT 348
Query 409 GAA-AACCTCATTTCTAGGGCAAGAGTA 435
|| ||| |||||||||| |||||||||
Sbjct 349 GAGGAAC-TCATTTCTAGAGCAAGAGTA 375
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55916479660
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5