BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G27999.1
Length=640
Score E
Sequences producing significant alignments: (Bits) Value
Ahg914034 jgi|Araly1|914034|Al_scaffold_0001_4288 606 5e-173
Ahg906436 jgi|Araly1|906436|Al_scaffold_0003_3564 562 1e-159
Ahg914202 jgi|Araly1|914202|Al_scaffold_0001_4456 560 4e-159
Ahg897211 jgi|Araly1|897211|Al_scaffold_0005_1177 412 1e-114
Ahg897212 jgi|Araly1|897212|Al_scaffold_0005_1178 315 3e-85
> Ahg914034 jgi|Araly1|914034|Al_scaffold_0001_4288
Length=582
Score = 606 bits (328), Expect = 5e-173
Identities = 507/591 (86%), Gaps = 21/591 (4%)
Strand=Plus/Plus
Query 15 ATGGTGGCATACGTCGATAAAAActtttcattggcttgttttttggttttact-tctttt 73
||||| ||||||||||||||||| ||||||| ||||||||| |||||||||| | ||||
Sbjct 1 ATGGTTGCATACGTCGATAAAAAGTTTTCATCGGCTTGTTTAGTGGTTTTACTAT-TTTT 59
Query 74 tgttgACTCATCGTATGCAAGGTTTAATACGTTGGTTACAAAAGATCAGATCCACACCAT 133
||||| |||||||||||||||||||| |||| |||||||||||||| |||||||||||||
Sbjct 60 TGTTGCCTCATCGTATGCAAGGTTTAGTACGATGGTTACAAAAGATGAGATCCACACCAT 119
Query 134 ATGCACCAAACAAGAGATCAATTCTTCATTTTGTTTTCAAGTTCTAAATA-CAAATCCTG 192
||||||||||||||| |||||||||||| |||||||| | |||||||| | ||| |||||
Sbjct 120 ATGCACCAAACAAGATATCAATTCTTCACTTTGTTTTGAGGTTCTAAA-AGCAACTCCTG 178
Query 193 AAATTGCTAAATTAGAT-TTTCCTAG-TCTCTTCAAATTTGTGCTTAATTATCAGGCTCA 250
|||||| || ||||||| ||| || | |||| ||||||| |||| ||||||||||||||
Sbjct 179 AAATTGGTAGATTAGATCTTT-CT-GATCTCGCCAAATTTTTGCTCAATTATCAGGCTCA 236
Query 251 AAATATTTCGGATACGCTGAAGCAATTTAAGTTATCAGGAGGCTACATGCCGGATGTTGA 310
|||||||||||||||||||||||||||||| |||||||||||||||| || |||| ||||
Sbjct 237 AAATATTTCGGATACGCTGAAGCAATTTAAATTATCAGGAGGCTACACGCGGGATATTGA 296
Query 311 ATCTCAATATAGCTTATGCATAGAATTATATGGATATGCTTTCGATAATCGTGATAT-TA 369
||| ||||| | ||||||||||| ||||| | ||||| | || ||||||||| | |
Sbjct 297 GTCTAAATATTCCGTATGCATAGAAGAATATGAAGATGCTCTAGAAAATCGTGAT-TCTG 355
Query 370 CCCTCAGATATTTAGCTGCCAAAGACTATAACAGCGTAAACACTAGGGTCAGTGGAACGT 429
|||||| |||||| ||||||||||||||| || || ||||||||| |||||||| |||
Sbjct 356 CCCTCAAATATTTGGCTGCCAAAGACTATGACGGCTTAAACACTATGGTCAGTGCAACAA 415
Query 430 TGGA-AGATATATTTACGTGTACTGATGATTTGTCAACAATGAAGCCAATACCACAATTT 488
|| | |||||| |||||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct 416 TG-ACAGATATGTTTACGTGTACTGATGATTTATCAACAATGAAGCCAATCCCACAATTA 474
Query 489 TTTATGACGGAAAGTAAT-TTGATTAAAGAAT-TGTCTAAGATTCTCTTAGTGATTCTCG 546
||| ||||| |||||||| || |||| || | ||||||| ||| |||| ||||||||||
Sbjct 475 TTTGTGACGAAAAGTAATGTT-ATTAGTGA-TCTGTCTAACATTATCTTCGTGATTCTCG 532
Query 547 AATGTTTCATAAGT-AAGAGAAAAGAATTCTGTAATT---GAGATCTATAA 593
|||||||| |||| || | |||| |||| ||||||| | |||||||||
Sbjct 533 AATGTTTCCTAAGAGAAAAAAAAA-AATTATGTAATTCTCGTGATCTATAA 582
> Ahg906436 jgi|Araly1|906436|Al_scaffold_0003_3564
Length=600
Score = 562 bits (304), Expect = 1e-159
Identities = 513/608 (84%), Gaps = 37/608 (6%)
Strand=Plus/Plus
Query 15 ATGGTGGCATACGTCGATAA-AAActtttcattggcttgttttttggttttacttctttt 73
|||||| |||||| |||||| ||| ||||| ||||||||| |||||||||||||||||
Sbjct 1 ATGGTGACATACGCCGATAATAAA-ATTTCACCGGCTTGTTTATTGGTTTTACTTCTTTT 59
Query 74 tgttgACTCATCGTATGCAAGGTTTAATACGTTGGTTACAAAAGATCAGATCCACACCAT 133
||||| | |||| ||||||| ||||| |||| |||||||| ||||| |||||||||||||
Sbjct 60 TGTTGTCCCATCTTATGCAATGTTTAGTACGATGGTTACAGAAGATGAGATCCACACCAT 119
Query 134 ATGCACCAAACAAGAGATCAATTCTTCATTTTGTTTTCAAGTTCT-AAATACAAATCCTG 192
|||||||||| | || ||||||||||||||||||||| | ||||| ||| |||||||
Sbjct 120 ATGCACCAAAGAGGATATCAATTCTTCATTTTGTTTTGAGGTTCTGAAA-GCAAATCCCA 178
Query 193 AAATTGCTAAATTAGATTTTCCTAGTCTCT-TCAAATTTGTGCTTAATTATCAGGCTCAA 251
||||||||| |||||||||| || |||| | ||||||| |||| |||||||||||||||
Sbjct 179 AAATTGCTAGATTAGATTTTTCTGGTCT-TGCCAAATTTTTGCTCAATTATCAGGCTCAA 237
Query 252 AATATTTCGGATACGCTGAAGCAATTTAAGTTATCAGGAGGCTACATGCCGGATGTTGA- 310
||||||||||||||||||||||| |||||||||||||||||||||| ||||||| ||||
Sbjct 238 AATATTTCGGATACGCTGAAGCATTTTAAGTTATCAGGAGGCTACACGCCGGATATTGAT 297
Query 311 --AT----CT-C----A-A-T-A-TA--GCTTATGCATAGAATTATATGGATATGCT-TT 352
|| || | | | | | || ||||||||| ||||||||||| | ||||| ||
Sbjct 298 TCATATATCTTCTGCGATACTCAATATCGCTTATGCAAAGAATTATATGAAAATGCTCTT 357
Query 353 CGATAATCGTGATAT-TACCCTCAGATATTTAGCTGCCAAAGACTATAACAGCGTAAACA 411
|| |||||||| || | |||||| |||||| ||||||||||| ||| || || ||||||
Sbjct 358 -GACAATCGTGA-ATCTGCCCTCAAATATTTGGCTGCCAAAGATTATGACGGCTTAAACA 415
Query 412 CTAGGGTCAGTGGAACGTTGGA-AGATATATTTACGTGTACTGATGATTTGTCAACAATG 470
||| |||||| ||||||||| | |||||| ||||||||||||||||||||||||||||||
Sbjct 416 CTATGGTCAGCGGAACGTTG-ACAGATATGTTTACGTGTACTGATGATTTGTCAACAATG 474
Query 471 AAGCCAATACCACAATTTTTTATGACGGAAAGTAAT-TTGATTAAAGAATTGTCTAAGAT 529
|||||| |||||||||||||||||||| |||||||| || |||||||| |||||||| ||
Sbjct 475 AAGCCAGTACCACAATTTTTTATGACGAAAAGTAATGTT-ATTAAAGACTTGTCTAACAT 533
Query 530 TCTCTTAGTGATTCTCGAATGTTTCATAAGTAAGAGAAAAGA-ATTCTGTAATT---GAG 585
| ||||||||||| ||||||||||| || | || |||||| | ||| ||| || |||
Sbjct 534 TATCTTAGTGATTGTCGAATGTTTCCTACGAAA-AGAAAAAATATTATGTCCTTCTCGAG 592
Query 586 ATCTATAA 593
||||||||
Sbjct 593 ATCTATAA 600
> Ahg914202 jgi|Araly1|914202|Al_scaffold_0001_4456
Length=558
Score = 560 bits (303), Expect = 4e-159
Identities = 483/568 (85%), Gaps = 20/568 (4%)
Strand=Plus/Plus
Query 15 ATGGTGGCATACGTCGATAAAAActtttcattggcttgttttttggttttacttc-tttt 73
||||| |||||||||| |||||||||||||| ||||||||| ||||||||| || ||||
Sbjct 1 ATGGTTGCATACGTCGCTAAAAACTTTTCATCGGCTTGTTTAGTGGTTTTAC-TCTTTTT 59
Query 74 tgttgACTCATCGTATGCAAGGTTTAATACGTTGGTTACAAAAGATCAGATCCACACCAT 133
||||| |||||||||||||||||||| |||| |||||||||||||| |||||||| |||
Sbjct 60 TGTTGTCTCATCGTATGCAAGGTTTAGTACGATGGTTACAAAAGATGAGATCCACTTCAT 119
Query 134 ATGCACCAAACAAGAGATCAATTCTTCATTTTGTTTTCAAG-TTCTAAATA-CAAATCCT 191
||||||| ||||||| |||||||||||||| |||||| || ||||||| | |||| |||
Sbjct 120 ATGCACCCAACAAGATATCAATTCTTCATTATGTTTT-GAGATTCTAAA-ACCAAACCCT 177
Query 192 GAAATTGCTAAATTAGATTTTCCTAGTCTCTTCAAATTTGTGCTTAATTATCAGGCTCAA 251
|||||| ||| |||||||||| || |||||||||||||| |||| ||||||||||||| |
Sbjct 178 GAAATTACTAGATTAGATTTTTCTGGTCTCTTCAAATTTTTGCTCAATTATCAGGCTCGA 237
Query 252 AATATTTCGGATACGCTGAAGCAATTTAAGTTATCAGGAGGCTACATGCCGGATGTTGAA 311
||||||||||||||||||||||||||||| |||||||||||||||| || |||| ||||
Sbjct 238 AATATTTCGGATACGCTGAAGCAATTTAAATTATCAGGAGGCTACACGCGGGATATTGAG 297
Query 312 TCTCAATATAGCT-TATGCATAGAATTATATGGATATGCTTTCGATAATCGTGATATTA- 369
||| ||||| || ||||||||||| |||||| | ||||| | | |||||||||| |
Sbjct 298 TCTAAATATT-CTGTATGCATAGAAGTATATGAAGATGCTCTAGCCAATCGTGATAA-AG 355
Query 370 CCCTCAGATATTTAGCTGCCAAAGACTATAACAGCGTAAACACTAGGGTCAGTGGAACGT 429
|||||| |||||| ||||||||||||||| |||||||||| ||| |||||||| |||
Sbjct 356 CCCTCAAATATTTGGCTGCCAAAGACTATGCCAGCGTAAACTCTATGGTCAGTGCAACAA 415
Query 430 TGG-AAGATATATTTACGTGTACTGATGATTTGTCAACAATGAAGCCAATACCACAATTT 488
|| || |||| | ||||||||| |||||||||||||||||||| ||||||||| ||||
Sbjct 416 TGACAA-ATATGTCTACGTGTACCGATGATTTGTCAACAATGAAACCAATACCAAAATTA 474
Query 489 TTTATGACGGAAAGTAAT-TTGATTAAAGAAT-TGTCTAAGATTCTCTTAGTGATTCTCG 546
||||| ||| |||||||| || ||| ||| | ||||||| ||| | || ||||||||||
Sbjct 475 TTTATAACGAAAAGTAATGTT-ATTGCAGA-TCTGTCTAACATTATATTTGTGATTCTCG 532
Query 547 AATGTTTCATAAGTAAGAGAAAAGAATT 574
|| || |||||| || | |||| ||||
Sbjct 533 AACATTGCATAAG-AA-A-AAAA-AATT 556
> Ahg897211 jgi|Araly1|897211|Al_scaffold_0005_1177
Length=588
Score = 412 bits (223), Expect = 1e-114
Identities = 443/546 (81%), Gaps = 27/546 (5%)
Strand=Plus/Plus
Query 27 GTCGATAAAAActtttcattggcttgttttttggttttacttctttttgttgACTCATCG 86
|||||||||||||||||| |||||||| ||||||||||||||||||||| ||||||
Sbjct 13 GTCGATAAAAACTTTTCACCAGCTTGTTTACTGGTTTTACTTCTTTTTGTTGTCTCATCA 72
Query 87 TATGCAAGGTTTAATACGTTGGTTACAAAAGATCAGATCCACACCATATGCACCAAA-CA 145
||||||| ||||| ||| ||||||||| |||| |||||| |||| ||||||||||| ||
Sbjct 73 TATGCAAAGTTTAGTACCATGGTTACAACAGATGAGATCCGCACCTTATGCACCAAAGCA 132
Query 146 AGAGATCAATTCTTCATTTTGTTTTCAAGTTCTAAATA-CAAATCCTGAAATTGCTAAAT 204
| | |||| |||||||| |||||| | |||||||| | ||| |||||||||||||| |
Sbjct 133 GGTG-TCAAATCTTCATTGTGTTTTGAGGTTCTAAA-AGCAACTCCTGAAATTGCTAGAC 190
Query 205 TAGATTTTCCTAGTCTCTTCAAAT-TTGTGCTTAATTATCAGGCTCAAAATATTTCGGAT 263
|||||||| || ||||| ||||| || || |||||||||| ||||||||||||||||||
Sbjct 191 TAGATTTTTCTGGTCTCGCCAAATATT-TGATTAATTATCATGCTCAAAATATTTCGGAT 249
Query 264 ACGCTGAAGCAATTTAAGTTATCAGGAGGCTACATGCCGGATGTTGAATCTCAATATAGC 323
||||||||||||||||| |||||||||||||| || |||||| |||| ||| ||||| ||
Sbjct 250 ACGCTGAAGCAATTTAAATTATCAGGAGGCTATATACCGGATATTGATTCTGAATATCGC 309
Query 324 TTATGCATAGAATTATATGGATATGCTTTCGATAA-TCGTGAT-ATTACCCTCAGATATT 381
||||| | |||||||||| | ||||| |||| || | || | || |||||| |||||
Sbjct 310 TTATGTAAAGAATTATATAAAGATGCTCTCGACAAAT-GTCCTTATG-CCCTCAAATATT 367
Query 382 TAGCTGCCAAAGACTATAACAGCGTAAACACT-AGGGTCAG-TGGAACGTTGGAAGATAT 439
| ||||||||||||||| ||| | | || | | | ||| || | |||| ||| ||||||
Sbjct 368 TGGCTGCCAAAGACTATTACAACTTCAA-ATTTATGGT-AGCTCAAACGATGGGAGATAT 425
Query 440 -ATTTACGTGTACTGATGAT---TTGTCAACAATGAAGCCAATACCACAATTTTTTATGA 495
| | | |||| | ||||| |||||||||||||||||| |||||||||||||||| |
Sbjct 426 GAATAAT-TGTATTTATGATGAGTTGTCAACAATGAAGCCAGTACCACAATTTTTTATAA 484
Query 496 CGGAAAGTAATT-TGATTAAAGAA-TTG-TCTAAGATTCTCTTAGTGATTC-TCGAATGT 551
|| ||| |||| | ||| ||||| ||| | || || || |||| ||| |||| |||
Sbjct 485 CGAAAACTAATGAT-ATTCAAGAAATTGGT-TACT-TTATCATAGT-ATTTGTCGATTGT 540
Query 552 TTCATA 557
||||||
Sbjct 541 TTCATA 546
> Ahg897212 jgi|Araly1|897212|Al_scaffold_0005_1178
Length=975
Score = 315 bits (170), Expect = 3e-85
Identities = 353/439 (80%), Gaps = 22/439 (5%)
Strand=Plus/Plus
Query 96 TTTAATACGTTGGTTACAAAAGATCAGATCCACACCATATGCACCAAA-CAAGAGATCAA 154
|||| ||| ||||||||| |||| |||||| |||| ||||||||||| || | | ||||
Sbjct 469 TTTAGTACCATGGTTACAACAGATGAGATCCGCACCTTATGCACCAAAGCAGGTG-TCAA 527
Query 155 TTCTTCATTTTGTTTTCAAGTTCTAAATA-CAAATCCTGAAATTGCTAAATTAGATTTTC 213
|||||||| |||||| | |||||||| | ||| |||||||||||||||| ||||||||
Sbjct 528 ATCTTCATTGTGTTTTGAGGTTCTAAA-AGCAACTCCTGAAATTGCTAAACTAGATTTTT 586
Query 214 CTAGTCTCTTCAAAT-TTGTGCTTAATTATCAGGCTCAAAATATTTCGGATACGCTGAAG 272
| ||||| ||||| || || | |||||||| |||||||||||||||||||||||||||
Sbjct 587 TTGGTCTCGCCAAATATT-TGATCAATTATCATGCTCAAAATATTTCGGATACGCTGAAG 645
Query 273 CAATTTAAGTTATCAGGAGGCTACATGCCGGATGTTGAATCTCAATATAGCTTATGCATA 332
|||||||| |||||||||||||| || |||||| |||| ||| ||||| ||||||| | |
Sbjct 646 CAATTTAAATTATCAGGAGGCTATATACCGGATATTGATTCTGAATATCGCTTATGTAAA 705
Query 333 GAATTATATGGATATGCTTTCGATAA-TCGTGAT-ATTACCCTCAGATATTTAGCTGCCA 390
||||||||| | ||||| |||| || | || | || |||||| |||||| |||||||
Sbjct 706 GAATTATATAAAGATGCTCTCGACAAAT-GTCCTTATG-CCCTCAAATATTTGGCTGCCA 763
Query 391 AAGACTATAACAGCGTAAACACT-AGGGTCAG-TGGAACGTTGGAAGATAT-ATTTACGT 447
|||||||| ||| | | || | | | ||| || | |||| ||| |||||| | | | |
Sbjct 764 AAGACTATTACAACTTCAA-ATTTATGGT-AGCTCAAACGATGGGAGATATGAATAAT-T 820
Query 448 GTACTGATGAT---TTGTCAACAATGAAGCCAATACCACAATTTTTTATGACGGAAAGTA 504
||| | ||||| |||||||||||||||||| |||||||||||||||| || ||| ||
Sbjct 821 GTATTTATGATGAGTTGTCAACAATGAAGCCAGTACCACAATTTTTTATAACTAAAACTA 880
Query 505 ATT-TGATTAAAGAA-TTG 521
|| | ||| ||||| |||
Sbjct 881 ATGAT-ATTCAAGAAATTG 898
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 23445593955
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5