BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G28007.1
Length=1019
Score E
Sequences producing significant alignments: (Bits) Value
Ahg484586 jgi|Araly1|484586|fgenesh2_kg.5__578__AT3G28007.1 1387 0.0
> Ahg484586 jgi|Araly1|484586|fgenesh2_kg.5__578__AT3G28007.1
Length=852
Score = 1387 bits (751), Expect = 0.0
Identities = 821/854 (96%), Gaps = 8/854 (1%)
Strand=Plus/Plus
Query 49 TCTCGCTCGCTCTC-TTCTTTGTTCTTGCTCCTTGTTCTAGTTCGGATTTTTCTTTTGAA 107
|||| ||| ||||| || |||||||||||| ||||||||||||| ||||| ||||||||
Sbjct 1 TCTCTCTCTCTCTCGTT-TTTGTTCTTGCTTCTTGTTCTAGTTCAGATTTGGCTTTTGAA 59
Query 108 GTGAAATGGTTAACGCTACAGTTGCGAGAAACATTGCCGGCATTTGTGGAAATGTCATCT 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 60 GTGAAATGGTTAACGCTACAGTTGCGAGAAACATTGCCGGCATTTGTGGAAATGTCATCT 119
Query 168 CCTTGTTCTTGTTCTTATCTCCCATACCTACGTTCATAACCATATACAAGAAGAAAAAGG 227
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 120 CCTTGTTCTTGTTCTTATCTCCCATACCTACGTTCATAACCATATACAAGAAGCAAAAGG 179
Query 228 TGGAGGAGTACAAAGCTGACCCATACTTAGCCACGGTTCTAAATTGCGCACTATGGGTCT 287
|||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 180 TGGAGGAGTATAAAGCTGACCCATACTTAGCCACGGTTCTAAATTGCGCACTTTGGGTCT 239
Query 288 TTTATGGCTTACCAATGGTTCAACCAGATAGTCTCCTTGTGATCACCATAAATGGTACCG 347
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 240 TTTATGGCTTACCAATGGTTAAACCAGATAGTCTCCTTGTGATCACCATAAATGGTACCG 299
Query 348 GTTTAGCCATTGAGCTGGTGTATCTCGCTA-TCTTCTTCTTCTTTTCTCCAACTAGTCGC 406
|||| ||||||||| |||||||||||| || |||||||||||||||||||||||||||||
Sbjct 300 GTTTGGCCATTGAGATGGTGTATCTCG-TAATCTTCTTCTTCTTTTCTCCAACTAGTCGC 358
Query 407 AAGGTGAAAGTGGGGCTATGGTTAATAGGAGAGATGGTGTTTGTAGGAATAGTAGCCACA 466
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 359 AAGGTGAAAGTGGGGCTATGGTTAATAGGAGAGATGCTGTTTGTAGGAATAGTAGCCACA 418
Query 467 TGCACATTGCTATTGTTCCACACACATAACCAGAGATCTTCTTTTGTTGGAATCTTTTGT 526
||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||
Sbjct 419 TGCACATTGCTATTGTTCCACACACATAACCAGAGATCTCCTTTTGTTGGAATCTTCTGT 478
Query 527 GTCATTTTTGTTAGTCTCATGTATATTGCTCCTCTCACCATCATGAGTAAGGTGATCAAG 586
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 479 GTCATTTTTGTTAGTCTCATGTATATTGCTCCTCTCACCATCATGAGTAAGGTGATCAAG 538
Query 587 ACCAAAAGTGTGAAGTACATGCCATTCTCTCTCTCACTTGCCAATTTCCTCAATGGTGTC 646
|||||||||||||||||||||||||| ||||||||||||||||| |||||||| |||| |
Sbjct 539 ACCAAAAGTGTGAAGTACATGCCATTTTCTCTCTCACTTGCCAACTTCCTCAACGGTGCC 598
Query 647 GTTTGGGTTATTTATGCACTTATTAAGTTCGACCTTTTCATTTTGATTGGAAATGGACTT 706
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 599 GTTTGGGTTATTTATGCACTTATTAAATTCGACCTTTTCATTTTGATTGGAAATGGACTT 658
Query 707 GGAACGGTATCAGGAGCAGTACAACTTATACTCTATGCTTGCTATTACAAGACAACACCA 766
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 659 GGAACAGTATCAGGAGCAGTACAACTTATACTCTATGCTTGCTATTACAAGACAACACCA 718
Query 767 AAAGATGATGAAGATGAAGAAGAT---GAGGAGAATCTTTCTAAGGTTAACTCTCAGTTA 823
|||||||||||||||||||| ||| ||||||||||||||||||| |||||||||||||
Sbjct 719 AAAGATGATGAAGATGAAGAGGATCATGAGGAGAATCTTTCTAAGGCTAACTCTCAGTTA 778
Query 824 CAACTTAGTGGCAACAGTGGACAAGCTAAACGAGTTTCAGCTTGATTATATGTTT-GGAT 882
|||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||
Sbjct 779 CAACTTAGTGGCAACAATGGACAAGCTAAACGAGTTTCAGCTTGATTATATGTTTTGGAT 838
Query 883 TCATGAGATATGAA 896
||||||| ||||||
Sbjct 839 TCATGAGTTATGAA 852
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37894179498
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5