BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G28030.1
Length=4534
Score E
Sequences producing significant alignments: (Bits) Value
Ahg896721 jgi|Araly1|896721|Al_scaffold_0005_687 5978 0.0
> Ahg896721 jgi|Araly1|896721|Al_scaffold_0005_687
Length=4392
Score = 5978 bits (3237), Expect = 0.0
Identities = 3746/3978 (94%), Gaps = 89/3978 (2%)
Strand=Plus/Plus
Query 568 AGGAGGAGAAGCTAGATGAAGTATCTCAAGCATCTTTGGTGGGA---GAGACTGGTGTTG 624
||||||||||||||||||||||||||| |||||||||||||||| |||| ||||||||
Sbjct 467 AGGAGGAGAAGCTAGATGAAGTATCTCCAGCATCTTTGGTGGGAGGGGAGAATGGTGTTG 526
Query 625 ATGATGTTGTCAAAGAGTC-CGTGAAGGATGATCCCAAGGGAAAGGGAGTTTTGTTGGAT 683
||||||| ||||||||| | | |||||||||||||||||||||||||||||||||||||
Sbjct 527 ATGATGTCGTCAAAGAG-CTCACGAAGGATGATCCCAAGGGAAAGGGAGTTTTGTTGGAT 585
Query 684 GGGGATGA-C-------C----T--AGA-TAATCTTGTACAGGATTCCTCAGTACAGGGG 728
|||||||| | | | ||| |||||||| ||||||||||||||||||||||
Sbjct 586 GGGGATGACCTAGATAACAAAATGAAGAGTAATCTTGAACAGGATTCCTCAGTACAGGGG 645
Query 729 AAGGATTATCAGGAAAAGTTGGATGAGATGTTGGCGGCATCCCTTGCAGCTGAAGAAGAA 788
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 646 AAGGATTATCAGGAAAAGTTGGATGAGATGTTGGCGGCATCCCTTGCAGCTGAAGAAGAA 705
Query 789 CGAAACTTTACTAGCAAAGCATCGACTTCAGCTGCAGCAATCCCGTC--A-GAGGAGGAT 845
|||||||||||||||||||||| ||||||||||||||||||||||| | || ||||||
Sbjct 706 GGAAACTTTACTAGCAAAGCATCAACTTCAGCTGCAGCAATCCCGTCTGAGGAAGAGGAT 765
Query 846 GAGGAAGAAGACAGCGACGGAGATGAGGAAATTTTATTGCCAGTAATGGATGGGAATATC 905
|||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 766 GAGGAAGAGGACAGCGACGAAGATGAGGAAATTTTATTGCCAGTAATGGATGGGAATATC 825
Query 906 GACCCAGCTGTTCTGGCTTCTCTCCCTCCATCCATGCAACTTGATCTCCTTGCTCAGATG 965
|||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 826 GACCCAGCTGTTTTGGCTTCTCTCCCTCCATCCATGCAACTTGATCTCCTTGTTCAGATG 885
Query 966 AGAGAAAAATTGATGGCAGAAAACCGGCAAAAGTACCAAAAGGTCAAGAAGGCCCCTGAA 1025
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 886 AGAGAAAAATTGATGGCAGAAAACCGGCAAAAGTACCAAAAGGTCAAGAAGGCCCCTGAG 945
Query 1026 AAGTTTTCTGAATTGCAAATAGAAGCATATCTTAAAACTGTAGCCTTCCGTCGCGAAATA 1085
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 946 AAGTTTTCTGAATTGCAAATAGAAGCATATCTTAAAACTGTAGCCTTCCGTCGGGAAATA 1005
Query 1086 AATGAAGTTCAGAGATCTGCTGGTGGAAGGGCTGTTGGTGGAGTTCAAACTTCTAGGATA 1145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1006 AATGAAGTTCAGAGATCTGCTGGTGGAAGGGCTGTTGGTGGAGTTCAAACTTCTAGGATA 1065
Query 1146 GCTTCGGAAGCAAACAGAGAGTTTATATTCTCGTCTTCTTTTGCTGGTGATAAAGAAGTA 1205
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
Sbjct 1066 GCTTCGGAAGCAAACAGAGAATTTATATTCTCGTCTTCTTTTGCTGGTGATAAAGAAGAA 1125
Query 1206 CTGGCATCTGCCAGAGAAGGAAGAAATGATGAAAATCAAAAGAAAACGTCACAACAGTCT 1265
||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1126 CTGGCGTCCGCCAGAGAAGGAAGAAATGATGAAAATCAAAAGAAAACGTCACAACAGTCT 1185
Query 1266 TTGCCAGTCTCCGTCAAGAATGCTTCCCCGCTGAAAAAATCAGATGCTACCATTGAGTTG 1325
||||||||| ||||||||||||||||| || |||||||||||||||||||||||||||||
Sbjct 1186 TTGCCAGTCCCCGTCAAGAATGCTTCCTCGGTGAAAAAATCAGATGCTACCATTGAGTTG 1245
Query 1326 GATAGAGATGAACCTAAAAATCCTGATGAAAATATTGAAGTATATATAGATGAAAGGGGA 1385
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1246 GATAGAGATGAACCTAAAAATCCTGATGAAAATATTGAAGTATATATAGATGAAAGGGGG 1305
Query 1386 CGTTTTAGAATAAGGAACAGACACATGGGAATCCAAATGACACGTGATATCCAGAGGAAC 1445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1306 CGTTTTAGAATAAGGAACAGACACATGGGAATCCAAATGACACGTGATATCCAGAGGAAC 1365
Query 1446 TTACATTTGATGAAAGAAAAGGAGAGAACAGCTTCTGGTTCTATGGCTAAGAATGATGAA 1505
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1366 TTACATTTGATGAAAGAAAAGGAGAGAACAGCTTCTGGTTCTATGGCTAACAATGATGAA 1425
Query 1506 ACATTCAGCGCCTGGGAGAACTTTCCTACTGAGGACCAATTTCTTGAAAAATCACCTGTT 1565
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1426 ACATTCAGCGCCTGGGAGAACTTTCCTACTGAGGACCAGTTTCTTGAAAAATCACCTGTT 1485
Query 1566 GAGAAAGATGTTGTGGACCTGGAGATCCAGAATGATGATTCCATGCTGCATCCTCCATCT 1625
||| ||||||||||| |||||||||||||||||||||||||||||||||| |||||||
Sbjct 1486 GAGGAAGATGTTGTGAACCTGGAGATCCAGAATGATGATTCCATGCTGCAAAATCCATCT 1545
Query 1626 TCCATAGAGATATCATTTGACCATGATGGTGGTGGAAAAGATCTCAATGATGAAGATGAT 1685
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1546 TCAATAGAGATATCATTTGACCATGATGGTGGTGGAAAAGATCTCAATGATGAAGATGAT 1605
Query 1686 ATGTTTCTTCAATTGGCAGCGGGAGGACCAGTGACAATTAGTTCTACAGAAAATGATCCT 1745
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1606 ATGTTTCTTCAATTGGCAGCGGGAGGACCAGTGACAATCAGTTCTACAGAAAATGATCCT 1665
Query 1746 AAAGAAGACACTTCACCGTGGGCTTCTGACAGTGATTGGGAAGAAGTGCCTGTTGAACAG 1805
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1666 AAAGAAGACTCTTCACCGTGGGCTTCTGACAGTGATTGGGAAGAAGTGCCTGTTGAACAG 1725
Query 1806 AATACTTCTGTCTCTAAGCTTGAAGCGAATTTAAGCAATCAGCATATCCCCAAGGACATT 1865
||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1726 AATACTTCTCTCTCTAAGCTTGAAGCGAATTTAAGCAATCAGCATATCCCCAAGGATATT 1785
Query 1866 AGTATCGCTGAGGGTGTAGCATGGGAAGAATATAGTTGTAAAAATGCCAATAACTCCGTG 1925
||||||| ||||||||||||||||||||||||||||||| |||||||||||| |||| ||
Sbjct 1786 AGTATCGATGAGGGTGTAGCATGGGAAGAATATAGTTGTGAAAATGCCAATAGCTCCATG 1845
Query 1926 GAGAATGATACAGTAACAAAGATCACAAAAGGATATCTGGAAGAAGAAGCTGATCTGCAG 1985
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1846 GAGAATGATACAGTAACAAAGATCACAAAAGGCTATCTGGAAGAAGAAGCTGATCTGCAG 1905
Query 1986 GAGGCTATCAAGAAAAGTCTTCTTGAATTACACGATAAGGAATCCGGGGATGTCCTTGAA 2045
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1906 GAGGCTATCAAGAAAAGTCTTCTTGAATTACACGATAAGGAATCTGGGGATGTCCTTGAA 1965
Query 2046 GAAAATCAATCAGTAAGGGTAAATCTTGTTGTTGACAAGCCAAGCGAAGATAGTCTTTGT 2105
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1966 GAAAATCAATCAGTAAGGGTAAATCTTGTTGTTGACAAGCCAAGCGAAGATAGTCTTTGT 2025
Query 2106 TCTAGGGAAACGGTTGGTGAAGCTGAGGAAGAGAGATTTCTGGACGAAATAACAATCTTG 2165
||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 2026 TCTAGGGAAACCGTTGGTGAAGCTGAGGAAGAGGGATTTCTGGACGAAATAACAATCTTG 2085
Query 2166 AAAACCAGTGGTGCTATAAGTGAGCAGTCCAACACTTCTGTAGCGGGCAATGCAGATGGT 2225
||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 2086 AAAACCAGTGGTGCTATAAGTGAACAGTCCAACACGTCTGTAGCGGGCAATGCAGATGGT 2145
Query 2226 CAGAAAGGGATAACCAAACAATTTGGTACACACCCTTCTTCCGGTTCTAATAACGTTAGC 2285
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2146 CAGAAAGGGATAACCAAACAATTTGGTACACACCCTTCTTCCGGTTCTAATAACGTTAGC 2205
Query 2286 CATGCTGTGAGCAATAAATTGTCAAAGGTAAAATCAGTTATCTCACCCGAGAAAGCATTA 2345
| ||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 2206 CGTGCTGTGAGCAATGAATTGTCAAAGGTAAAATCAGTTATCTCACCTGAGAAAGCATTA 2265
Query 2346 AATGTTGCTAGTCAAAACCGCATGCTATCCACCATGGCTAAACAGCACAATGAAGAAGGT 2405
|||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct 2266 AATGTTGCTAGTCAAAGCTGCATGCTATCCACCATGGCTAAACAGCACAATGAAGAAGGT 2325
Query 2406 TCTGAAAGTTTTGGTGGAGAATCTGTTAAAGTGTCTGCTATGCCCATAGCTGATGAGGAA 2465
|||||||||||||||||||||||||| ||||| ||||||| |||||||||||||||||||
Sbjct 2326 TCTGAAAGTTTTGGTGGAGAATCTGTCAAAGTATCTGCTACGCCCATAGCTGATGAGGAA 2385
Query 2466 ATAACTGGTTTTCTTGATGAAAAAGATAATGCTGATGGTGAATCATCTATCATGATGGAC 2525
| |||||||||||||| |||||||| |||||||||||||||||||||||||||||| |
Sbjct 2386 AGAACTGGTTTTCTTGGTGAAAAAGGTAATGCTGATGGTGAATCATCTATCATGAT-G-- 2442
Query 2526 GATAAGAGAGATTATAGTAGACGTAAAATCCAGAGTCTTGTCACTGAATCAAGGGACCCT 2585
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2443 TATAAGAGAGATTATAGTAGACGTAAAATCCAGAGTCTTGTCACTGAATCAAGGGACCCT 2502
Query 2586 TCTCGTAATGTCGTCAGATCGCGAATAGGGATACTACATGACACAGATTCACAAAATGAA 2645
|||| | ||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 2503 TCTCTTGATGTCGTCAGATCGCAAATAGGGATACTACATGACACAGATTCACAAAATGAA 2562
Query 2646 AGAAGGGAGGAAAATAACTCTAACGAGCACACTTTCAATATTGACAGTTCAACAGATTTT 2705
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2563 AGAAGGGAGGAAAATAACTCTAACGAGCACACTTTCAATATTGACAGTTCAACAGATTTT 2622
Query 2706 GAAGAGAAAGGCGTGCCTGTTGAATTTTCAGAGGCAAATATAGAGGAGGAAATTCGAGTT 2765
||||||||| |||||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct 2623 GAAGAGAAAAGCGTGCCTGTTGAATTTTCAGAAGCAAATATTGAGGAGGAAATTCGAGTT 2682
Query 2766 CTCGACCAAGAATTCGTAAGTTTAGGTGATGAACAGAGAAAACTTGAGCGGAATGCTGAA 2825
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2683 CTCGACCAAGAATTCGTAAGTTTAGGTGATGAACAGAGAAAACTTGAGCGGAATGCTGAA 2742
Query 2826 TCTGTGAGCAGTGAGATGTTTGCAGAATGCCAGGAGCTACTCCAAATTTTTGGCATACCG 2885
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2743 TCTGTGAGCAGTGAGATGTTTGCAGAATGCCAGGAGCTACTCCAAATTTTTGGCATACCG 2802
Query 2886 TACATCATAGCTCCCATGGAAGCAGAGGCACAGTGTGCATTTATGGAACAATCAAACCTT 2945
|||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct 2803 TACATCATAGCTCCCATGGAAGCAGAGGCACAATGTGCGTTTATGGAACAATCAAACCTT 2862
Query 2946 GTTGATGGCATTGTCACTGACGATTCTGATGTATTCTTGTTTGGAGCAAGGAGCGTGTAC 3005
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2863 GTTGATGGCATTGTCACTGACGATTCTGATGTATTCTTGTTTGGAGCAAGGAGCGTGTAC 2922
Query 3006 AAAAATATATTTGATGATCGTAAATATGTGGAGACATACTTTATGAAGGACATTGAGAAG 3065
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct 2923 AAAAATATATTTGATGATCGCAAATATGTGGAGACATACTTTATGAAGGACATTGAAAAG 2982
Query 3066 GAGTTAGGCTTGAGCAGAGATAAAATAATCCGCATGGCAATGCTTCTAGGAAGTGATTAC 3125
||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 2983 GAGCTAGGCTTGAGCAGAGATAAAATAATCCGCATGGCAATGCTTCTAGGAAGCGATTAC 3042
Query 3126 ACAGAAGGAATCAGTGGTATTGGTATTGTCAATGCTATTGAAGTTGTGACTGCTTTTCCC 3185
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 3043 ACAGAAGGAATCAGTGGTATTGGTATTGTCAATGCTATTGAAGTTGTGACTGCATTTCCC 3102
Query 3186 GAGGAGGATGGGCTTCAGAAATTTCGTGAATGGGTTGAATCACCTGATCCAACCATTTTA 3245
|| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 3103 GAAGAGGATGGGCTTCAGAAATTTCGTGAGTGGGTTGAATCACCTGATCCAACCATTTTA 3162
Query 3246 GGAAAGACTGATGCAAAAACAGGTTCAAAGGTAAAGAAGCGTGGGTCTGCCTCCGTAGAT 3305
|| | || || | | |||||||||| ||||||| ||| ||||||
Sbjct 3163 GGT-----T--TG-AA-----G----A----TAAAGAAGCGGGGGTCTGGCTCTGTAGAT 3201
Query 3306 AATAAAGGAATCATCTCAGGTGCCTCGACTGATGACACCGAAGAAATCAAGCAAATCTTC 3365
|||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct 3202 AATAAAGGAATCATCTCAGGTGCCTCGACTGATGACACTGAAGAAATAAAGCAAATCTTC 3261
Query 3366 ATGGATCAGCATAGAAAGGTAAGCAAGAACTGGCATATTCCATTGACTTTCCCTAGTGAG 3425
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 3262 ATGGATCAGCATAGAAAGGTAAGCAAGAACTGGCATATTCCATCGACTTTCCCTAGTGAG 3321
Query 3426 GCTGTTATATCAGCCTACTTAAATCCGCAAGTGGATCTGTCGACTGAGAAATTCTCATGG 3485
|||||||| ||||||||||||||||| |||||||||| ||||||||||||||||||||||
Sbjct 3322 GCTGTTATTTCAGCCTACTTAAATCCACAAGTGGATCGGTCGACTGAGAAATTCTCATGG 3381
Query 3486 GGCAAACCTGATCTTTCAGTACTTAGAAAGCTATGCTGGGAAAAGTTTAATTGGAACGGC 3545
||||| |||||||| ||||| |||||||||||||||||||||||||||||||||||| ||
Sbjct 3382 GGCAAGCCTGATCTATCAGTTCTTAGAAAGCTATGCTGGGAAAAGTTTAATTGGAACAGC 3441
Query 3546 AAGAAAACAGATGAACTACTACTACCAGTCTTGAAGGAGTATGAAAAGCGCGAGACGCAA 3605
|||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 3442 AAGAAAACAGATGATCTACTACTACCAGTCTTGAAGGAGTATGAAAAGCGAGAGACGCAA 3501
Query 3606 CTTCGGATTGAAGCTTTCTATTCCTTTAATGAAAGATTTGCAAAGATCCGTAGTAAAAGA 3665
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3502 CTTCGGATGGAAGCTTTCTATTCCTTTAATGAAAGATTTGCAAAGATCCGTAGTAAAAGA 3561
Query 3666 ATCAACAAAGCTGTCAAAGGAATTGGTGGAGGTCTGTCGTCAGATGTGGCCGATCA-TAC 3724
|||||||||||||||||||||||||| |||||||| |||||||| ||||| ||| | |||
Sbjct 3562 ATCAACAAAGCTGTCAAAGGAATTGGCGGAGGTCTATCGTCAGAAGTGGCTGAT-AGTAC 3620
Query 3725 TCTCCAGGAAGGTCCAAGAAAACGAAATAAGAAAAAAGTTGCTCCTCATGAAACTGAAGA 3784
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 3621 TCTCCAGGAAGGTCCAAGAAAACGAAATAAGAAAAGAGTTGCTCCTCATGAAACTGAAGA 3680
Query 3785 TAACAACACTTCAGACAAAGATTCACCTATAGCCAATGAGAAAGTGAAAAACAAAAGGAA 3844
||||| |||||| |||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 3681 TAACACCACTTCTGACAAAGATTCACCTAAAGCCAATGAGAAAGTGAAAAACAAAAGGAA 3740
Query 3845 GCGCTTAGAAAAACCATCTAGTAGTAGAGGTAGAGGCAGAGCCCAGAAAAGAGGACGAGG 3904
|||||||||||||||||||||||||||||| ||||||||||||||| |||||||| ||
Sbjct 3741 GCGCTTAGAAAAACCATCTAGTAGTAGAGGCAGAGGCAGAGCCCAGGAAAGAGGA--AG- 3797
Query 3905 AAGAGGAAGAGTCCAAAAAGATCTCCTTGAGCTATCCGACGGCAGTTCTGATGATGATGA 3964
| | | |||||||||||| ||||||||||||||||| |||| || |||||||||||||||
Sbjct 3798 A-G-G-AAGAGTCCAAAAGGATCTCCTTGAGCTATCAGACGACACTTCTGATGATGATGA 3854
Query 3965 TGACGATGACAAGGTAGTGGAATTGGAGGCAAAACCG-GCCAATCTTCAAAAATCAACAC 4023
| | | || | | || |||||||||||| || ||||||||||| |||||||
Sbjct 3855 ---C-A--A---GG-A-T----TTAGAGGCAAAACCGAGC-AATCTTCAAAAGTCAACAC 3898
Query 4024 GATCTCGGAATCCTGTGATGTACAGTGCAAAAGAAGATGATGAATTGGACGAGTCAAGAA 4083
|||||||||||||||||| ||||| |||||||||||| |||||| |||||||||||||||
Sbjct 3899 GATCTCGGAATCCTGTGAAGTACAATGCAAAAGAAGACGATGAAATGGACGAGTCAAGAA 3958
Query 4084 GCAATGAAGGATCTCCG-AGTGAGAATTTCGAAGAGGTTGACGAAGGCAGAATAGGAAAT 4142
|||||| || ||| || |||||| |||||||||||||||| ||||||||||||||||||
Sbjct 3959 GCAATGGAGAATC-CCTTAGTGAGCATTTCGAAGAGGTTGATGAAGGCAGAATAGGAAAT 4017
Query 4143 GA-T--GATT------CT--GTA-GATGCATCAATCAACGACTGTCCTTCCGAAGACTAC 4190
| | || | | | || ||||||||||| || ||||| || ||||||||
Sbjct 4018 GTCTCTGAAGAAAGAACACAGAAAGAAGCATCAATCAATGATTGTCCATCTGAAGACTAT 4077
Query 4191 ATTCAAACGGGAGGTGGGTTCTGTGCAGATGAAGCTGATGAGATTGGAGATGCTCATTTG 4250
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 4078 ATTCAAACGGGAGGTGGGTTCTGTGCAGATGAAGCTGATGAGATTGGAGATGCTCATCTG 4137
Query 4251 GAAGATAAAGCTACCGATGATTACAGAGTGATCGGTGGCGGATTCTGTGTTGATGAAGAT 4310
||||||||||||| ||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct 4138 AAAGATAAAGCTACGGATGATTACAGAGTGATTGGTGGCGGATTCTGTGTTGATGAGGAT 4197
Query 4311 GAAACAGCTGAGGAAAACACAATGGATGATGATGCAGAAATTTTAAAGATGGAGAGTGAA 4370
|||||||||||||||||||||| |||||||| |||| || ||||||||| |||||||
Sbjct 4198 GAAACAGCTGAGGAAAACACAACGGATGATG---CAGAGATACTAAAGATGGGGAGTGAA 4254
Query 4371 GAACAACGAAAGAAAGGTAAACGTCGAAACGAAGAAGATGCATCATTGGATGAGAATGTT 4430
|||| |||||||||||||||||||||||| |||||||||||||||||||| |||||||||
Sbjct 4255 GAACGACGAAAGAAAGGTAAACGTCGAAATGAAGAAGATGCATCATTGGAAGAGAATGTT 4314
Query 4431 GACATTCATTTTGGGAATTCTTCAGCTGGAGGATTAAGTGCGATGCCTTTCTTGAAGAGA 4490
|| ||| ||||||||||||||||| |||||||||||||||| ||||||||||||||||||
Sbjct 4315 GAGATTGATTTTGGGAATTCTTCAACTGGAGGATTAAGTGCTATGCCTTTCTTGAAGAGA 4374
Query 4491 AAGAAGAGaaaaaactga 4508
|| |||||||||||||||
Sbjct 4375 AAAAAGAGAAAAAACTGA 4392
Score = 763 bits (413), Expect = 0.0
Identities = 454/474 (96%), Gaps = 2/474 (0%)
Strand=Plus/Plus
Query 69 ATGGGAGTACAAGGTCTTTGGGAGCTTCTTGCTCCTGTTGGTCGCCGTGTCTCCGTAGAA 128
|||||||| ||||||||||||||||||||||||||||| ||||| || |||||||| |||
Sbjct 1 ATGGGAGTGCAAGGTCTTTGGGAGCTTCTTGCTCCTGTAGGTCGTCGCGTCTCCGTCGAA 60
Query 129 ACCCTAGCCAACAAACGATTAGCCATCGATGCGAGTATATGGATGGTACAATTTATCAAA 188
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 ACCCTAGCCAACAAACGATTAGCCATCGATGCGAGTATATGGATGGTACAATTTATCAAA 120
Query 189 GCGATGCGTGACGAGAAGGGAGATATGGTTCAGAATGCACACTTGATCGGGTTTTTTCGA 248
||||||||||||||||| ||||||||||||||||| |||||||||||||| ||||| |||
Sbjct 121 GCGATGCGTGACGAGAAAGGAGATATGGTTCAGAACGCACACTTGATCGGATTTTTCCGA 180
Query 249 AGGATTTGTAAGCTTTTGTTTCT-AAGGACTAAACCGATCTTCGTCTTTGATGGAGCTAC 307
|||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 181 AGGATTTGTAAGCTTTTGTT-CTTAAGGACTAAACCGATCTTCGTCTTTGATGGAGCTAC 239
Query 308 TCCGGCATTGAAACGTCGTACTGTTATTGCTCGCCGTCGTCAACGTGAGAACGCTCAGAC 367
||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct 240 TCCGGCATTGAAACGTCGTACTGTTATTGCTCGTCGTCGTCAACGTGAGAATGCTCAGAC 299
Query 368 TAAAATCCGGAAGACTGCTGAGAAATTGCTGCTTAATAGGCTTAAGGATATTAGGCTTAA 427
||||||||| || || ||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 300 TAAAATCCGAAAAACCGCTGAGAAATTGCTGCTTAATCGGCTTAAGGATATTAGGCTTAA 359
Query 428 GGAACAAGCTAAAGATATTAAGAATCAGAGATTGAAGCAGGATGATAGTGATAGAGTGAA 487
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 360 GGAACAAGCTAAAGATATTAAGAATCAAAGATTGAAGCAGGATGATAGTGATAGAGTGAA 419
Query 488 GAAACGTGTGTCTTCTGATTCTGTGGAAGATAATTTGCGAGTTCCTGTGGAGGA 541
||||||||| ||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 420 GAAACGTGTATCTTCTGATTCTGTGGAAGATAATTTGCGAGTTCCTGAGGAGGA 473
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 171525481511
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5