BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G28040.1
Length=3256
Score E
Sequences producing significant alignments: (Bits) Value
Ahg484589 jgi|Araly1|484589|fgenesh2_kg.5__581__AT3G28040.1 4804 0.0
> Ahg484589 jgi|Araly1|484589|fgenesh2_kg.5__581__AT3G28040.1
Length=3252
Score = 4804 bits (2601), Expect = 0.0
Identities = 3053/3270 (93%), Gaps = 35/3270 (1%)
Strand=Plus/Plus
Query 4 CAAAATGCCATAACTCTCTCTTCCCCTATATACCAAAAATTAATCTGTATCTCTCTATCC 63
|||||||||||||||||||||| |||| ||||||||||||||| || |||||||||||||
Sbjct 1 CAAAATGCCATAACTCTCTCTT-CCCT-TATACCAAAAATTAAGCTTTATCTCTCTATCC 58
Query 64 ATCAAGAGAGAGCATCACAATGGGC-AAACAGAGAAGAACCATGATCTCATTTACTCTGT 122
||||||||||||||||| |||| || | | ||||||||| ||||||||||||||||||||
Sbjct 59 ATCAAGAGAGAGCATCAAAATGAGCGATA-AGAGAAGAAACATGATCTCATTTACTCTGT 117
Query 123 TTCTCACATTGACAATGATGTCATCACTCATCAATGGCGATACCGACTCAATTCAACTAA 182
||||| ||||||||| ||||| |||||||||||| ||||||| ||||||||| |||||||
Sbjct 118 TTCTCTCATTGACAACGATGTTATCACTCATCAACGGCGATATCGACTCAATCCAACTAA 177
Query 183 ACGACGACGTTTTAGGACTCATCGTCTTCAAATCAGACCTCAACGACCCATTTTCACACC 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 178 ACGACGACGTTTTAGGACTCATCGTCTTCAAATCAGACCTCAACGACCCATTTTCACACC 237
Query 243 TTGAGTCATGGACCGAAGACGACAACACTCCTTGTTCATGGAGTTACGTCAAATGCAACC 302
|| | ||||||| ||||||||| ||||||||||| |||||||| ||||||||||||||||
Sbjct 238 TTCAATCATGGAACGAAGACGATAACACTCCTTGCTCATGGAGCTACGTCAAATGCAACC 297
Query 303 CCAAAACATCTCGAGTCATCGAGCTTTCTCTCGACGGTTTAGCCTTAACCGGAAAAATCA 362
|||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||
Sbjct 298 CCAAAACATCTCGAGTCACCGAGCTTTCCCTCGACGGTTTAGCCTTAACCGGAAAAATCA 357
Query 363 ACCGCGGAATCCAAAAGCTTCAACGTTTAAAAGTACTCTCACTTTCCAACAACAACTTCA 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 358 ACCGCGGAATCCAAAAGCTTCAACGTTTAAAAGTACTCTCACTTTCCAACAACAACTTCA 417
Query 423 CCGGAAACATCAACGCTCTCTCAAAC-AACAACCATCTCCAAAAGCTAGATCTTAGCCAC 481
|||||||||||||||||||||| ||| |||||| ||||||||||||||||||||||||||
Sbjct 418 CCGGAAACATCAACGCTCTCTC-AACTAACAACAATCTCCAAAAGCTAGATCTTAGCCAC 476
Query 482 AACAATCTCTCCGGTCAAATCCCTTCTTCTCTCGGTTCAATAACCTCCTTGCAACACCTT 541
||||||||||||||||||||||| || |||||||||||||| | ||||||||||||||||
Sbjct 477 AACAATCTCTCCGGTCAAATCCCGTCGTCTCTCGGTTCAATCAGCTCCTTGCAACACCTT 536
Query 542 GACTTAACCGGAAACTCCTTCTCCGGTACACTCTCTGACGATTTGTTCAACAACTGTTCC 601
||||||||||||||||| |||||||||||||||||||| ||||| |||||||||||||||
Sbjct 537 GACTTAACCGGAAACTCTTTCTCCGGTACACTCTCTGATGATTTCTTCAACAACTGTTCC 596
Query 602 TCTCTTAGATATCTTTCTCTCTCCCACAACCACCTCGAAGGTCAAATCCCAAGTACTCTG 661
|||||||||||||| ||||| || || ||||| || ||||||||||||||||||||||||
Sbjct 597 TCTCTTAGATATCTGTCTCTGTCTCATAACCATCTTGAAGGTCAAATCCCAAGTACTCTG 656
Query 662 TTTCGATGCTCTGTTTTAAACAGTCTCAATCTTTCAAGAAACCGTTTCTCCGGTAACCCT 721
|||| |||||||||||| |||||||| ||||| |||||||||||||| | ||| |
Sbjct 657 TTTCAATGCTCTGTTTTGAACAGTCTTAATCTCTCAAGAAACCGTTT-TTCGG-----GT 710
Query 722 AGCTTCGTCTCAGGAATCTGGAGACTTGAGAGGTTAAGAGCTTTAGATCTATCTTCTAAC 781
|| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 711 AGTTTCGTCTCAGGATTCTGGAGACTTGAGAGGTTAAGAGCTTTAGATCTATCTTCTAAT 770
Query 782 TCACTTTCTGGTTCAATACCTTTGGGGATACTCTCTCTACATAACTTGAAAGAGTTGCAA 841
|||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||
Sbjct 771 TCACTTTCTGGTTCAATACCTTTGGGGATACTCTCTTTGCATAACTTGAAAGAGTTGCAA 830
Query 842 CTACAGAGGAATCAGTTCTCTGGAGCATTGCCTTCAGATATTGGACTCTGTCCTCATTTA 901
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 831 TTACAGAGGAATCAGTTCTCTGGATCATTGCCTTCAGATATTGGACTCTGTCCTCATTTA 890
Query 902 AACAGAGTTGATCTAAGTTCCAATCATTTCTCTGGTGAACTTCCAAGAACTCTTCAGAAG 961
|||||||||||| | |||| ||||| ||||||||||||||||||||||||||||||||||
Sbjct 891 AACAGAGTTGATTTGAGTTTCAATCTTTTCTCTGGTGAACTTCCAAGAACTCTTCAGAAG 950
Query 962 CTGAAATCTTTAAATCACTTCGATGTATCGAACAATTTGCTCTCCGGTGATTTCCCGCCA 1021
|||| |||||| || ||||||||| ||||||| |||||||||||||||||||||||| ||
Sbjct 951 CTGAGATCTTTGAACCACTTCGATTTATCGAAGAATTTGCTCTCCGGTGATTTCCCGGCA 1010
Query 1022 TGGATCGGTGACATGACCGGTTTAGTACACTTGGATTTCTCCAGCAATGAGTTAACCGGA 1081
||||| ||||| ||||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct 1011 TGGATTGGTGATATGACTGGTTTAGTACACTTGGATTTCTCCAGCAATGAGTTAACTGGG 1070
Query 1082 AAGCTTCCTTCTTCT-ATTA-GTAACTTGAGGTCTCTAAAGGATCTAAACTTGTCTGAGA 1139
|||||||||||| | | || |||||||||| ||| |||||||||||| |||||||||||
Sbjct 1071 GAGCTTCCTTCTT-TGA-TAGGTAACTTGAGATCTTTAAAGGATCTAATCTTGTCTGAGA 1128
Query 1140 ACAAACTCTCCGGCGAGGTACCTGAGTCTTTGGAATCATGCAAAGAGCTTATGATTGTTC 1199
||||||||||||||||| | || || ||||||||||||||||||| ||||||| ||||||
Sbjct 1129 ACAAACTCTCCGGCGAGATTCCGGAATCTTTGGAATCATGCAAAGGGCTTATGGTTGTTC 1188
Query 1200 AGCTTAAAGGCAATGACTTCTCCGGTAACATTCCTGATGGtttttttGATCTTGGTCTTC 1259
|||| ||||| |||| ||||||||||| ||||||||||||||| |||||||||| |||||
Sbjct 1189 AGCTCAAAGGTAATGGCTTCTCCGGTAGCATTCCTGATGGTTTGTTTGATCTTGCTCTTC 1248
Query 1260 AAGAAATGGATTTTTCGGGTAACGGTTTAACCGGTTCGATCCCAAGAGGCTCAAGCAGGC 1319
|||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||
Sbjct 1249 AAGAAATGGATTTTTCGGGTAACGGTTTTACCGGTTCGATCCCGAGAGGCTCAAGCAGGC 1308
Query 1320 TTTTCGAGTCACTCATAAGGCTCGATCTTTCGCATAACAGTCTCACTGGAAGTATACCTG 1379
|||| |||||||||| ||| ||||||||||||| |||| ||||||||||||||||||||
Sbjct 1309 TTTTTGAGTCACTCAAAAGACTCGATCTTTCGCGCAACAATCTCACTGGAAGTATACCTG 1368
Query 1380 GTGAAGTAGGACTCTTCATCCACATGAGATACCTTAATTTATCATGGAACCATTTCAACA 1439
||||| |||| ||||||||| ||||||||||||| ||||| |||||||||||||||||||
Sbjct 1369 GTGAAATAGGGCTCTTCATCAACATGAGATACCTCAATTTGTCATGGAACCATTTCAACA 1428
Query 1440 CAAGAGTTCCTCCTGAAATTGAGTTTCTACAGAACTTAACGGTATTGGATCTTAGGAACA 1499
||||||||||||||||||| |||||||||||||| |||| || ||||||||||||||||
Sbjct 1429 CAAGAGTTCCTCCTGAAATCGAGTTTCTACAGAATTTAATAGTCTTGGATCTTAGGAACA 1488
Query 1500 GTGCACTGATTGGTTCGGTTCCTGCTGATATATGTGAGTCTCAGAGTCTTCAGATACTTC 1559
| || |||||||||||||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct 1489 GCGCGCTGATTGGTTCGGTTCCTGCTGATATATGTGAGTCTCAGAGTCTGCAGATCCTTC 1548
Query 1560 AACTGGATGGTAACTCACTAACCGGTTCTATACCGGAAGGAATCGGAAACTGCTCTTCTC 1619
| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1549 AGTTGGATGGTAACTCACTAACTGGTTCTATACCGGAAGGAATCGGAAACTGCTCTTCTC 1608
Query 1620 TTAAATTGTTGAGTTTGTCTCATAACAATCTTACCGGTCCTATTCCTAAATCTCTTTCAA 1679
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1609 TTAAATTGTTGAGTTTGTCTCATAACAATCTTACCGGTCCTATTCCTAAATCTCTTTCAA 1668
Query 1680 ACTTACAAGAGCTCAAGATTTTAAAGCTAGAGGCTAATAAGCTTAGTGGAGAAATACCGA 1739
|||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||
Sbjct 1669 ACTTACAAGAGCTCAAGATTCTAAAGCTAGAGGCCAATAAGCTTAGTGGAGAAATACCGA 1728
Query 1740 AAGAGCTTGGGGATTTGCAGAATCTGTTATTGGTTAACGTTTCGTTTAACCGACTTATCG 1799
||||||| ||||| || |||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1729 AAGAGCTCGGGGAATTACAGAATCTGTTATTGGTTAACGTTTCGTTTAACCGACTCATCG 1788
Query 1800 GAAGGTTACCA-TTGGGAGATGTGTTCCAAAGCTTAGACCAGAGTGCTATACAAGGAAAC 1858
||||||||||| ||| || |||||||||||||||||||||||||||||| |||||||||
Sbjct 1789 GAAGGTTACCAGTTGA-AGGTGTGTTCCAAAGCTTAGACCAGAGTGCTATTCAAGGAAAC 1847
Query 1859 CTAGGTATTTGTTCACCGTTGTTGAGAGGTCCTTGTACACTGAATGTTCCAAAGCCTCTT 1918
||||||||||||||||| ||||||||||| || |||||||||||||||||||||||||||
Sbjct 1848 CTAGGTATTTGTTCACCATTGTTGAGAGGACCATGTACACTGAATGTTCCAAAGCCTCTT 1907
Query 1919 GTCATCAATCCAAACTCCTACGGGAATGGGAACAATATGCCTGGAAACCGAGCAAGCGGT 1978
||||| ||||||||||||||||| | |||||||| ||||| ||||||||||||||| ||
Sbjct 1908 GTCATTGATCCAAACTCCTACGGGCACGGGAACAAAATGCCGGGAAACCGAGCAAGCAGT 1967
Query 1979 GGTTCTGGAACA-TTCCACCGCAGAATGTTCCTGAGTGTTTCAGTGATTGTAGCAATATC 2037
|||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1968 GGTTCTGGAA-AGTTCCACCGCAGAATGTTCCTGAGTGTTTCAGTGATTGTAGCAATATC 2026
Query 2038 AGCTGCGATTCTCATCTTCTCTGGAGTCATAATTATAACGCTGCTTAACGCGTCTGTTAG 2097
||| || || |||||||| || |||||||||||||||||| |||||||||||||||| ||
Sbjct 2027 AGCCGCTATACTCATCTTTTCCGGAGTCATAATTATAACGTTGCTTAACGCGTCTGTGAG 2086
Query 2098 AAGACGGCTTGCATTTGTAGACAATGCGTTGGAAAGCATTTTCTCGGGGTCTTCGAAATC 2157
|||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 2087 AAGACGGCTTGCATTTGTAGACAACGCGTTGGAGAGCATTTTCTCGGGGTCTTCGAAATC 2146
Query 2158 AGGAAGAAGCTTAATGATGGGTAAACTTGTTCTGTTAAACTCAAGAACTTCACGTTCCTC 2217
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2147 AGGAAGAAGCTTAATGATGGGTAAACTTGTTCTGTTAAACTCAAGAACTTCACGTTCCTC 2206
Query 2218 GTCTTCGTCTCAAGAGTTCGAAAGAAACCCAGAGTCACTTCTCAACAAAGCTTCAAGAAT 2277
|||||||||||||||||||||||||||||| || || ||||| |||||||||||||||||
Sbjct 2207 GTCTTCGTCTCAAGAGTTCGAAAGAAACCCGGATTCTCTTCTGAACAAAGCTTCAAGAAT 2266
Query 2278 CGGTGAAGGGGTTTTTGGAACAGTCTACAAAGCACCTTTAGGAGAGCAAGGGAGAAACTT 2337
|||||||| |||||||||||||| ||||| |||||||||||||| || |||||||||||
Sbjct 2267 TGGTGAAGGAGTTTTTGGAACAGTGTACAAGGCACCTTTAGGAGAACAGGGGAGAAACTT 2326
Query 2338 GGCTGTTAAGAAACTTGTCCCGTCTCCGATTCTTCAAAACCTAGAAGATTTTGATCGCGA 2397
|||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||
Sbjct 2327 GGCTGTTAAGAAACTTGTCCGGTCGCCGATTCTTCAAAACCTAGAAGATTTTGATCGCGA 2386
Query 2398 AGTTCGGATATTGGCGAAAGCGAAGCACCCTAATCTAGTATCGATCAAAGGGTATTTCTG 2457
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2387 AGTTCGGATATTGGCGAAAGCGAAGCACCCTAATCTAGTATCGATCAAAGGGTATTTCTG 2446
Query 2458 GACACCGGACTTGCATCTTCTGGTATCAGAATACATCCCCAATGGAAACTTGCAGTCCAA 2517
||||||||| |||||||||||||||||||||||||| || || |||||||||||||||||
Sbjct 2447 GACACCGGAGTTGCATCTTCTGGTATCAGAATACATACCAAACGGAAACTTGCAGTCCAA 2506
Query 2518 GTTACACGAACGAGAACCCTCAACACCGCCTCTTTCTTGGGACGTAAGATACAAAATCAT 2577
|||||||||||||||| ||||||||||||||||||| |||||||||||||||| ||||||
Sbjct 2507 GTTACACGAACGAGAATCCTCAACACCGCCTCTTTCGTGGGACGTAAGATACAGAATCAT 2566
Query 2578 CCTCGGTACAGCTAAAGGACTCGCTTATCTCCATCACACATTCCGTCCAACAACCATCCA 2637
||||||||| || |||||||||||||||||||| || |||||||||||||||||||||||
Sbjct 2567 CCTCGGTACGGCCAAAGGACTCGCTTATCTCCACCATACATTCCGTCCAACAACCATCCA 2626
Query 2638 CTTCAACCTGAAA-CCGACAAACATCCTCCTCGACGAGAAAAACAACCCGAAAATCTCTG 2696
||||||||| ||| || || |||||||||||||||||||||||||||||||||||||| |
Sbjct 2627 CTTCAACCT-AAAGCCAACCAACATCCTCCTCGACGAGAAAAACAACCCGAAAATCTCCG 2685
Query 2697 ATTTCGGGCTATCTCGTCTCCTAACAACACAAGACGGGAACACAATGAACAACAACAGGT 2756
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 2686 ATTTCGGGCTCTCTCGTCTCCTAACAACACAAGACGGGAACACAATGAACAACAACAGAT 2745
Query 2757 TTCAAAACGCTTTAGGCTACGTAGCGCCTGAACTAGAGTGTCAGAACTTAAGGGTCAACG 2816
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2746 TTCAAAACGCTTTAGGCTACGTAGCGCCTGAACTAGAGTGTCAGAACTTAAGGGTCAACG 2805
Query 2817 AGAAATGCGATGTTTACGGGTTCGGGGTTTTGATACTCGAACTGGTGACTGGTCGGAGAC 2876
||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||
Sbjct 2806 AGAAATGCGATGTTTACGGGTTCGGGGTTTTGATACTCGAACTTGTTACTGGTCGGAGAC 2865
Query 2877 CGGTGGAGTATGGTGAAGACAGCTTTGTGATACTTAGTGACCATGTTCGAGTTATGTTAG 2936
| |||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 2866 CTGTGGAGTACGGTGAAGACAGCTTTGTGATACTTAGCGACCATGTTCGAGTTATGTTAG 2925
Query 2937 AACAAGGGAATGTGTTGGAGTGTATTGATCCTGTGATGGAGGAACAATACTCTGAAGATG 2996
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2926 AACAAGGGAATGTGTTGGAGTGTATTGATCCTGTGATGGAGGAACAATACTCTGAAGATG 2985
Query 2997 AGGTTTTGCCTGTCTTGAAACTTGCTCTGGTCTGTACTTCTCAGATACCTTCGAATCGGC 3056
|||||||||||||| ||||||||||||| ||||||||||| || ||||||||||||||||
Sbjct 2986 AGGTTTTGCCTGTCCTGAAACTTGCTCTTGTCTGTACTTCACAAATACCTTCGAATCGGC 3045
Query 3057 CAACAATGGCCGAGATTGTTCAGATCTTGCAGGTCATCAATTCTCCTGTTCCCCACCGTA 3116
|||||||||| |||||||||||||||||||| |||||||||||||||||||| ||||| |
Sbjct 3046 CAACAATGGCGGAGATTGTTCAGATCTTGCAAGTCATCAATTCTCCTGTTCCTCACCGGA 3105
Query 3117 TCATGGATAGTTTCTAAACATCTTTGTGTTATAGTTAAtttttcattagcttttcttttt 3176
|||||||||||||||||| |||||||||||| |||||||||||||||| |||| |||||
Sbjct 3106 TCATGGATAGTTTCTAAAAATCTTTGTGTTA--GTTAATTTTTCATTAGTTTTTTTTTTT 3163
Query 3177 gcaaattttactttgtctgtgtcttttgttgt---------ggtcttt-gtgtAGAGATT 3226
|||| |||| | |||||| |||||||| || | || |||| |||||||||||
Sbjct 3164 GCAATTTTTTCGTTGTCTTTGTCTTTTTTTTTTTTTTTTTTGG-CTTTTGTGTAGAGATT 3222
Query 3227 GCTTATTTCACAATGCTACGCTTTCTGTTC 3256
|||||||||||||||||||||||||| |||
Sbjct 3223 GCTTATTTCACAATGCTACGCTTTCTCTTC 3252
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 122887903217
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5