BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G28050.1
Length=1456
Score E
Sequences producing significant alignments: (Bits) Value
Ahg484590 jgi|Araly1|484590|fgenesh2_kg.5__582__AT3G28050.1 2122 0.0
Ahg493329 jgi|Araly1|493329|fgenesh2_kg.7__2762__AT4G15540.1 58.4 1e-07
> Ahg484590 jgi|Araly1|484590|fgenesh2_kg.5__582__AT3G28050.1
Length=1378
Score = 2122 bits (1149), Expect = 0.0
Identities = 1271/1329 (96%), Gaps = 12/1329 (1%)
Strand=Plus/Plus
Query 89 ctctgtttctctcatcttaaaattcatgtaaaaaaaatctacaaatcaaagagagaaaca 148
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 54 CTCTGTTTCTCTCATCTTAAAATTCATGTAAAAAAAATCTACAAATCAAAGAGA-AAACA 112
Query 149 gagtaaagagaaagagaagaagatggcgcggaaatactttcagagagaagTTTTGCCGGT 208
|||||||||| || |||||||||||||||| |||||||||||| ||||||||||||||||
Sbjct 113 GAGTAAAGAG-AA-AGAAGAAGATGGCGCGAAAATACTTTCAGGGAGAAGTTTTGCCGGT 170
Query 209 AACGGCTTTGGTAATAATGGAATGTGCAAACGTTGGTTTAAACACTCTGTTTAAAGCAGC 268
|||||| || || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 171 AACGGCGTTAGTGATAATGGAATGTGCAAACGTTGGTTTAAACACTCTGTTTAAAGCAGC 230
Query 269 AACTTTGAAAGGCATGAGCTTTCATGTCTTCATCGTTTACTCTTATGGTCTCGCTGCTCT 328
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 231 AACTTTGAAAGGCATGAGCTTTCATGTCTTCATCGTTTACTCTTATGGTCTCGCTGCTCT 290
Query 329 GCTTCTTCTTCCTTCTCTGTTTTGCTCTTTCAGATCAAGAACTCTTCCACCGATGAATTT 388
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 291 GCTTCTTCTTCCTTCTCTGTTTTGCTCTTTCAGATCAAGAACTCTTCCACCGATGAATTT 350
Query 389 CTCTATTCTCTACAAAATCGTGCTCTTAGGGATTATTGGATGCTGTTCAAACATAATGGG 448
||| |||||||||||||| ||||| |||||||||||||||||||| ||||||||||||||
Sbjct 351 CTCAATTCTCTACAAAATTGTGCTTTTAGGGATTATTGGATGCTGCTCAAACATAATGGG 410
Query 449 ATACACAGGGATAAATTATAGTTCTCCAACACTTGCTTCTGCAATCAGCAACCTCACTCC 508
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 411 GTACACAGGGATAAATTATAGTTCTCCAACACTTGCTTCTGCAATCAGCAACCTCACTCC 470
Query 509 TGCTTTCACCTTCTTGCTTGCAGTCGTTTTCAGGATGGAGAGTGTGTCTTTTAAGAGAAC 568
|||||||||||||||||| || ||||||||||||||||||||||||||||| ||||||||
Sbjct 471 TGCTTTCACCTTCTTGCTCGCCGTCGTTTTCAGGATGGAGAGTGTGTCTTTCAAGAGAAC 530
Query 569 AAGTAGTGTGGCTAAAATGTTAGGAACCGTTGTTTCTATTGGAGGTGCATTTATAGTGAC 628
||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 531 AAGTAGTGTAGCTAAAATGTTAGGAACCGTTGTTTCCATTGGAGGTGCATTTATAGTGAC 590
Query 629 TCTTTATAATGGTCCTGTTGTGATTGCTAAATCGCCACCGTCTGTTTCTTTGCGATCGCA 688
||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||
Sbjct 591 TCTTTATAATGGTCCTGTTGTGATTGCTACATCACCACCGTCTGTTTCTTTGCGATCGCA 650
Query 689 ATCGACTAACCCTAATTGGATACTTGGTGCGGGTTTCCTTGCGGTCGAGTATTTCTGTGT 748
|||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||| |
Sbjct 651 ATCGACTAACCCTAATTGGATACTTGGTGCGGCTTTCCTTTCGGTCGAGTATTTCTGTCT 710
Query 749 TCCATTGTGGTACATTGTTCAGACTCAAATCATGAGAGAGTATCCGGCCGAGTTTACCGT 808
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 711 TCCATTGTGGTACATTGTTCAGACTCAAATCATGAGAGAGTATCCGGCCGAGTTTACCGT 770
Query 809 TGTTTGCTTTTATAGCATAGGCGTTAGCTTTTGGACCGCGCTAGTCACATTGTTCACTGA 868
||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||
Sbjct 771 TGTTTGCTTTTATAGCATAGGTGTTAGCTTTTGGACCGCGCTCGTCACATTGTTCACTGA 830
Query 869 AGGGAATGACTTGGGTGCATGGAAGATAAAACCGAATATAGCTTTAGTGTCGATCGTTTG 928
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 831 AGGGAGTGACTTGGGTGCATGGAAGATAAAACCGAATATAGCTTTAGTGTCGATCGTTTG 890
Query 929 CTCGGGATTGTTTGGATCTTGCATAAACAATACTATCCACACGTGGGCATTGCGGATCAA 988
||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 891 CTCGGGATTCTTTGGATCTTGCATAAACAATACTATTCACACGTGGGCATTGCGGATCAA 950
Query 989 GGGGCCTTTATTTGTTGCAATGTTCAAGCCATTGTCTATTGCAATTGCTGTTGCAATGGG 1048
|||||||||||||||||||||||||||||||||||| ||||| ||||| |||||||||||
Sbjct 951 GGGGCCTTTATTTGTTGCAATGTTCAAGCCATTGTCGATTGCGATTGCCGTTGCAATGGG 1010
Query 1049 AGTTATCTTCCTGCGAGATTCTCTCTACATCGGCAGCTTGATCGGGGCAACGGTAATAAC 1108
||||||||||| || ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1011 CGTTATCTTCCTTCGGGATTCTCTCTATATCGGCAGCTTGATCGGGGCAACGGTAATAAC 1070
Query 1109 AATCGGGTTTTACACGGTAATGTGGGGAAAAGCCAAGGAAGTGGCCTTGGTCGAAGATGA 1168
|||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct 1071 AATCGGGTTTTACACGGTGATGTGGGGCAAAGCCAAGGAAGTGGCCTTGGTCGAAGATGA 1130
Query 1169 TAACAAGGCTAACCACGAGGAGGCCAATGAAGCTGACCTTGATTCTCCATCGGGTTCACA 1228
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1131 CAACAAGGCTAACCACGAGGAGGCCAATGAAGCTGACCTTGATTCTCCATCAAGTTCACA 1190
Query 1229 GAAGGCTCCTCTCTTGGAAAGTTACAAGAACGATGAACATGTATGAGTATCATCAACTAG 1288
|||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||
Sbjct 1191 GAAGGCTCCTCTCTTGGAAACTTACAAGAACGATGAACATGTCTGAGTATCATCAACTAG 1250
Query 1289 TGAAGATCACGCTATATATATATGT------GTGAAAAAATT-CATATGTGAATTGTCTT 1341
||||||||||||||||||||||| | ||| ||||| |||||||||||||||||
Sbjct 1251 TGAAGATCACGCTATATATATATATATATATGTGTGGAAATTTCATATGTGAATTGTCTT 1310
Query 1342 TGTAATTTATTTGATGAGACAAATGTGATCTTTAATTTTAGGA-TCCAAGTGTTTTCTAA 1400
|||||||||||||| ||||||||||||||||| |||||||||| || | |||||||||||
Sbjct 1311 TGTAATTTATTTGACGAGACAAATGTGATCTTCAATTTTAGGAATC-ATGTGTTTTCTAA 1369
Query 1401 TCACAATCT 1409
|||||||||
Sbjct 1370 TCACAATCT 1378
> Ahg493329 jgi|Araly1|493329|fgenesh2_kg.7__2762__AT4G15540.1
Length=1170
Score = 58.4 bits (31), Expect = 1e-07
Identities = 106/141 (75%), Gaps = 9/141 (6%)
Strand=Plus/Plus
Query 1009 TGTTCAAGCCATTGTCTATTGCAATTGCTGTTGCAATGGGAGTTATCTTCCTGCGA-GAT 1067
|||||||||||||||||||||||||||| || || |||| | ||| ||||| || |||
Sbjct 841 TGTTCAAGCCATTGTCTATTGCAATTGCAGTCGCCATGGCTGCTATATTCCT-CGGCGAT 899
Query 1068 TCTCT-CTACATCGGCAGCT-TGATCGGGGCAACGGTAATAA-CAATCGGGTTTTACACG 1124
|| || | || | || || | |||| || || | || | | | | |||||||||||
Sbjct 900 TCGCTTC-ACCTTGGGAG-TGTGATTGGATCAGTGATATTGAGCTTT-GGGTTTTACACT 956
Query 1125 GTAATGTGGGGAAAAGCCAAG 1145
|| || ||||| ||||| |||
Sbjct 957 GTGATTTGGGGCAAAGC-AAG 976
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54469050350
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5