BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G28060.1

Length=648
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg896724 jgi|Araly1|896724|Al_scaffold_0005_690                     608    1e-173


> Ahg896724 jgi|Araly1|896724|Al_scaffold_0005_690
Length=1092

 Score =  608 bits (329),  Expect = 1e-173
 Identities = 408/447 (91%), Gaps = 2/447 (0%)
 Strand=Plus/Plus

Query  113  TCTTTCGGCACCTCCCTCGCAACCGTCCAATTATAATTGGGTCATCGGGGGAGGTCTTCT  172
            ||||| || |||||| |||| |||||| |||| |||||||||||| || ||||||||| |
Sbjct  522  TCTTTTGGTACCTCCATCGCCACCGTCGAATTCTAATTGGGTCATTGGCGGAGGTCTTTT  581

Query  173  -G-GGTTGAATACACTCTCATTGCCGTCGCTTACATTGTTCAGACACATATAATGAGGGA  230
             |   |||| |||| ||||||||||||| |||||||| ||||||||||||||||||||||
Sbjct  582  AGCCCTTGAGTACATTCTCATTGCCGTCTCTTACATTATTCAGACACATATAATGAGGGA  641

Query  231  ATATCCGTCGGAATTTGCCTTGGCACTTTCCCACAATGTCTGCGTTTCAATCTCTTGTGC  290
            |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  642  ATATCCATCGGAATTTGCCTTGGCACTTTCCCACAATGTCTGCGTTTCAATCTCTTGTGC  701

Query  291  ATTTGTTAGTTTATTCGTGGAGGAGAACAATCCTAGCGCATGGATTATGAGATCGAAAAT  350
            ||||||||||||||| | |||| ||||| ||||||| || ||||||||||||||||||||
Sbjct  702  ATTTGTTAGTTTATTTGCGGAGAAGAACCATCCTAGTGCGTGGATTATGAGATCGAAAAT  761

Query  351  TATGTTGATATGCATCGTCGCAACGGGGGTGGTGAATTCGACGAGCTATGTTGTTGAATC  410
            ||||||| |||||||||||||||||||  |||| ||||||||| ||||||||||||| ||
Sbjct  762  TATGTTGGTATGCATCGTCGCAACGGGAATGGTAAATTCGACGGGCTATGTTGTTGAGTC  821

Query  411  ATGGACAGTGCGATATAAGGGGGCTGTGTTCCTAGCAATGTTCAGGCCATTATCTATCGT  470
            ||||||||||||| |||||||| | || || ||||||||||||||||||||||||||  |
Sbjct  822  ATGGACAGTGCGACATAAGGGGCCAGTATTTCTAGCAATGTTCAGGCCATTATCTATATT  881

Query  471  AACCGCTGTCGTACTAGGGGCAATATTTCTAGGCGATTCTCTCTATCTCGGAAGTGTGAT  530
            |||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  882  AACCGCAGTGGTACTAGGGGCAATATTTCTAGGCGATTCTCTCTATCTCGGAAGTGTGAT  941

Query  531  TGGTGGAACGTTGATATCAATCGGTTT  557
            |||||||||||||||||||||||||||
Sbjct  942  TGGTGGAACGTTGATATCAATCGGTTT  968


 Score = 99.0 bits (53),  Expect = 4e-20
 Identities = 64/69 (93%), Gaps = 1/69 (1%)
 Strand=Plus/Plus

Query  1   ATGGCTGGGAGATTCTGTCAAAGAGACGGCGGGATCATGACGGCAATGGTGGCGGTGGAG  60
           |||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||| |
Sbjct  1   ATGGCTGGGAGATTCTGTCAAAGAGACGGCGGGATCATGACGGCGATGGTGGTGGTGGTG  60

Query  61  AT-TCTGAC  68
           || || |||
Sbjct  61  ATCTCCGAC  69



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 23750577291


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5