BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G28070.1
Length=1314
Score E
Sequences producing significant alignments: (Bits) Value
Ahg484593 jgi|Araly1|484593|fgenesh2_kg.5__585__AT3G28080.1 1543 0.0
Ahg896727 jgi|Araly1|896727|Al_scaffold_0005_693 1345 0.0
Ahg896729 jgi|Araly1|896729|Al_scaffold_0005_695 542 3e-153
> Ahg484593 jgi|Araly1|484593|fgenesh2_kg.5__585__AT3G28080.1
Length=1144
Score = 1543 bits (835), Expect = 0.0
Identities = 1002/1083 (93%), Gaps = 9/1083 (1%)
Strand=Plus/Plus
Query 50 TAATGGCCGGAACCGCAAGTCCTTGGCGGAGAGAGGCCGTGTTCTTGACGGCAATGCTGG 109
||||||||||| ||| ||||| |||||||||||||||||||||||||||||||||||| |
Sbjct 21 TAATGGCCGGAGCCGTAAGTCTTTGGCGGAGAGAGGCCGTGTTCTTGACGGCAATGCTAG 80
Query 110 TGGTCGAAACCAGCGTCGTCGGAATAAGTACTTTGTTTAAATTTGCAACTTCAAAGGGAC 169
|||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||
Sbjct 81 CGGTCGAAACCAGCGTCGTCGGAATAAGTACTTTGTTTAAAGTAGCAACTTCAAAGGGAC 140
Query 170 TCAACATTTATCCTTTCCTCGGCTAttcttatcttcttgcttctcttcttcttcttcctt 229
|||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||
Sbjct 141 TCAACATTTATCCTTTCCTCGGCTATTCCTATCTTCTAGCTTCTCTTCTTCTTCTTCCTT 200
Query 230 ctcttttcttcA-CTAACAGGTCAAGTTCACTTCCTCCACTAAGTGTCTCAATACTTTCA 288
|||||||||||| || |||| ||||| |||||||||||||||| | |||||||||| |
Sbjct 201 CTCTTTTCTTCACCT-ACAGTTCAAGATCACTTCCTCCACTAAATATCTCAATACTCTGT 259
Query 289 AAAATTGGACTTCTTGGATTTCTAGGATCAATGTATGTGATCACAGGATACATAGGCATC 348
|| || |||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 260 AAGATCGGACTTCTTGGATTTCTAGGATCAATGTATGTAATCACAGGATACATAGGCATC 319
Query 349 GAATACAGCAGCCCAACCTTAGCCTCCGCCATAAACAATATCACTCCTGCTCTTACCTTC 408
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 320 GAATACAGCAGCCCAACATTAGCCTCCGCCATAAACAATATCACTCCTGCTCTTACCTTC 379
Query 409 ATCCTCGCCATTATCTTCAGAATGGAAAAAGTATCTTTCAAAGAGAGGAGTAGTCTAGCC 468
||||||||| ||||||||||||||||||||||||| |||||||| ||||| ||| |||||
Sbjct 380 ATCCTCGCCGTTATCTTCAGAATGGAAAAAGTATCATTCAAAGAAAGGAGCAGTGTAGCC 439
Query 469 AAATTGATGGGGACGATATTGTCACTGATAGGTGCACTTGTGGTGATTTTCTACCACGGT 528
||| ||||||||||| || ||||| | |||||||||||||||||||||||||||| ||||
Sbjct 440 AAAGTGATGGGGACGCTACTGTCATTAATAGGTGCACTTGTGGTGATTTTCTACCGCGGT 499
Query 529 CCACGTGTCTTCC-TCGCATCTTCTCCGCCCTATGTAAACTTCCGTCAGTTTTCTCCACC 587
|||||||||| || | |||||||||||||| ||| |||||||||| ||| ||| |||||
Sbjct 500 CCACGTGTCT-CCGTAGCATCTTCTCCGCCGTATCTAAACTTCCGACAGCATTCCCCACC 558
Query 588 GTTGTCATCTTCAAACTCCGATTGGCTCATCGGTGGAGCTCTTCTAACCATGCAAGGCAT 647
||||||||||||||||||||| ||||||||||| ||||||||||||||||| ||||||||
Sbjct 559 GTTGTCATCTTCAAACTCCGACTGGCTCATCGGAGGAGCTCTTCTAACCATACAAGGCAT 618
Query 648 ATTCGTTTCTGTTTCTTTCATTCTTCAGGCACATATAATGAGTGTA-TATCCAGCAGCAT 706
||||||||||| ||||||||||| ||||||||||||||||||| | |||||||||||||
Sbjct 619 CTTCGTTTCTGTCTCTTTCATTCTCCAGGCACATATAATGAGTG-AGTATCCAGCAGCAT 677
Query 707 TCAGAGTCTCCTTTCTTTACACTGTATGTGTTTCAATCGTGACCTCGACGATTGGACTAG 766
| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 678 TTAGAGTCTCCTTTCTTTACACTGTATGTGTTTCAATCGTGACCTCAACGATTGGACTAG 737
Query 767 TAGTTGAAAAGAACAACCCAAGCGTTTGGATCATTCATTTCGATATTACTTTGATTACAA 826
||| ||||||||||| ||||||||||||||||||||||| ||||||||||||||||| |
Sbjct 738 TAGCCGAAAAGAACAATCCAAGCGTTTGGATCATTCATTTTGATATTACTTTGATTACGA 797
Query 827 TTGTTACCATGGCAATAGTAACTTCAGTATACTATGTGATTCATTCATGGACAGTACGAC 886
||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 798 TTGTTACTATGGCAATAATAACTTCAGTATACTATGTGATTCATTCATGGACAGTACGAC 857
Query 887 ATAAAGGACCTCTGTACTTAGCCATATTTAAACCTTTGTCCATTTTAATAGCAGTGGTTA 946
| ||||||||||| |||||||| |||||||| |||||||| |||||||||||||||||||
Sbjct 858 ACAAAGGACCTCTATACTTAGCGATATTTAAGCCTTTGTCGATTTTAATAGCAGTGGTTA 917
Query 947 TGGGGGCCATTTTTCTCAATGATTCTCTCTATCTCGGATGTTTGATCGGAGGAATTTTGA 1006
|||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 918 TGGGGGGCATTTTTCTCAACGATTCTCTCTATCTCGGATGTTTGATCGGAGGAATTTTGA 977
Query 1007 TAACATTAGGCTTTTACGCTGTGATGTGGGGCAAAGCAAACGAAGAGAAGGATCAGTT-- 1064
|| |||||||||| |||||||||||||||||||||||||||||||||||||| |||||
Sbjct 978 TATCATTAGGCTTCTACGCTGTGATGTGGGGCAAAGCAAACGAAGAGAAGGACCAGTTGT 1037
Query 1065 -ATCATTTTCagaaaaagagaaaacgcctcttctattaaaccgcaaaaacgaccaagttt 1123
||||||||| | |||||||||||| ||||||||||| | |||| ||||||||| |||
Sbjct 1038 TATCATTTTCCGGAAAAGAGAAAACCCCTCTTCTATTGAGTGGCAAGAACGACCAAATTT 1097
Query 1124 aaa 1126
|||
Sbjct 1098 AAA 1100
> Ahg896727 jgi|Araly1|896727|Al_scaffold_0005_693
Length=1074
Score = 1345 bits (728), Expect = 0.0
Identities = 968/1083 (89%), Gaps = 20/1083 (2%)
Strand=Plus/Plus
Query 52 ATGGCCGGAACCGCAAGTCCT-TGGCGGAGAGAGGCCGTGTTCTTGACGGCAATGCTGGT 110
|||||||| || | |||| || ||||||||||||||| ||||||||||||| |||||||
Sbjct 1 ATGGCCGGGACAGTAAGT-CTCTGGCGGAGAGAGGCCTTGTTCTTGACGGCGATGCTGG- 58
Query 111 GGTC-GAAACCAGCGTCGTCGGAATAAGTACTTTGTTTAAATTTGCAACTTCAAAGGGAC 169
| | |||||| || |||| ||||| ||||||||||||||| | ||||||||||||||||
Sbjct 59 CGACTGAAACCGGCCTCGTTGGAATTAGTACTTTGTTTAAAGTAGCAACTTCAAAGGGAC 118
Query 170 TCAA-CATTTATCCTTTCCTCGGCTAttcttatcttcttgcttctcttcttcttcttcct 228
|||| | ||||| |||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 119 TCAATC-TTTATGCTTTCCTCGGCTATTCTTATCTTCTTGCTTCTCTCCTTCTTCTTCCT 177
Query 229 tctcttttcttcACTAACAGGTCAAG-TTCACTTCCTCCACTAAGTGTCTCAATACTTTC 287
||| |||||||| | ||||||||||| || |||||||||||||||| ||||||||||||
Sbjct 178 TCTTTTTTCTTCTCCAACAGGTCAAGATT-ACTTCCTCCACTAAGTTTCTCAATACTTTG 236
Query 288 AAAAATTGGACTTCTTGGATT-TCTAGGATCAATGTATGTGATCACAGGATACATAGGCA 346
||||| |||||||||||||| | ||||||||||||||||||||||||||||||||||||
Sbjct 237 TAAAATAGGACTTCTTGGATTAT-TAGGATCAATGTATGTGATCACAGGATACATAGGCA 295
Query 347 TCGAATACAGCAGCCCAACCTTAGCCTCCGCCATAAACAATATCACTCCTGCTCTTACCT 406
|| ||||||||| ||||||||||||||| ||||| | |||||||||||||||||||||||
Sbjct 296 TCAAATACAGCAACCCAACCTTAGCCTCTGCCATTAGCAATATCACTCCTGCTCTTACCT 355
Query 407 TCATCCTCGCCATTATCTTCAGAATGGAAAAAGTATCTTTCAAAGAGAGGAGTAGTCTAG 466
| |||||||||||||||||||||||||||||||||||||||||||| ||||| ||| | |
Sbjct 356 TTATCCTCGCCATTATCTTCAGAATGGAAAAAGTATCTTTCAAAGAAAGGAGCAGTGTGG 415
Query 467 CCAAATTGATGGGGACGATATTGTCACTGATAGGTGCACTTGTGGTGATTTTCTACCACG 526
||||| |||| || || ||||||||||| ||||| |||||||||||| || |||||||||
Sbjct 416 CCAAAGTGATAGGAACAATATTGTCACTAATAGGCGCACTTGTGGTGGTTCTCTACCACG 475
Query 527 GTCCACGTGTCTTCCTCGCATCTTCTCCGCCCTATGTAAACTTCCGTCAGTTTTCTCCAC 586
|||||||||||||| | ||||| |||||||| ||| |||||||||||||| || ||||||
Sbjct 476 GTCCACGTGTCTTCATTGCATCATCTCCGCCGTATCTAAACTTCCGTCAGCTTCCTCCAC 535
Query 587 CGTTGTCATCTTCAAACTCCGATTGGCTCATCGGTGGAGCTCTTCTAACCATGCAAG-G- 644
|||| ||||||||||| || |||||||||||||| |||||||||||||||| |||| |
Sbjct 536 CGTTATCATCTTCAAATTCAGATTGGCTCATCGGCGGAGCTCTTCTAACCA--CAAGAGA 593
Query 645 CATATTCGTTTCTGTTTCTTTCATTCTTCAGGCACATATAATGAGTGTATATCCAGCAGC 704
||| ||||||||||| ||||||||||| |||||||| |||||||||| ||||||||||||
Sbjct 594 CATCTTCGTTTCTGTATCTTTCATTCTCCAGGCACAAATAATGAGTGAATATCCAGCAGC 653
Query 705 ATTCAGAGTCTCCTTTCTTTACACTGTATGTGTTTCAATCGTGACCTCGA-CGATTGGAC 763
||||| ||||||||| || ||||| |||| |||||||||||||| || | ||||||||
Sbjct 654 ATTCACAGTCTCCTTCCTCTACACCGTATCAGTTTCAATCGTGACTTC-AGTGATTGGAC 712
Query 764 TAGTAGTTGAAAAGAACAACCCAAGCGTTTGGATCATTC-ATTTCGATATTACTTTGATT 822
||||||| ||||||||||| ||||||||||||||||||| |||| || ||||||||||||
Sbjct 713 TAGTAGTGGAAAAGAACAATCCAAGCGTTTGGATCATTCGATTT-GACATTACTTTGATT 771
Query 823 ACAATTGTTACCATGGCAATAGTAACTTCAGTATACTATGTGATTCATTCATGGACAGTA 882
||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 772 ACAATTGTTACTATGGCAATAGTTACTTCAGTATACTATGTGATTCATTCATGGACAGTA 831
Query 883 CGACATAAAGGACCTCTGTACTTAGCCATATTTAAACCTTTGTCCATTTTAATAGCAGTG 942
| || ||||||||||| |||||||| |||||||| || ||||| |||||||||||||||
Sbjct 832 AGTCACAAAGGACCTCTATACTTAGCGATATTTAAGCCATTGTCGATTTTAATAGCAGTG 891
Query 943 GTTATGGGGGCCA-TTTTTCTCAATGATTCTCTCTATCTCGGATGTTTGATCGGAGGAAT 1001
|||||| | | || |||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct 892 GTTATGAGCG-CAGTTTTTCTCAACGATTCTCTCTATCTTGGATGTTTGATCGGAGGAAT 950
Query 1002 TTTGATAACATTAGGCTTTTACGCTGTGATGTGGGGCAAAGCAAACGAAGAGAAGGATCA 1061
||||||||| || || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 951 TTTGATAACGTTGGGGTTTTACGCTGTGATGTGGGGCAAAGCAAACGAAGAGAAGGATCA 1010
Query 1062 GTTATCATTTTCagaaaaagagaaaacgcctcttctattaaaccgcaaaaacgaccaagt 1121
||| | | |||| |||||||||||||| ||||||||||| ||| || | || |||||| |
Sbjct 1011 GTTGTTACTTTCGGAAAAAGAGAAAACCCCTCTTCTATTGAACGGCTACAATGACCAAAT 1070
Query 1122 tta 1124
|||
Sbjct 1071 TTA 1073
> Ahg896729 jgi|Araly1|896729|Al_scaffold_0005_695
Length=816
Score = 542 bits (293), Expect = 3e-153
Identities = 612/762 (80%), Gaps = 38/762 (5%)
Strand=Plus/Plus
Query 314 GATCAATGTATGTGATCACAGGATACATAGGCATCGAATACAGCAGCCCAACCTTAGCCT 373
|||||| |||| |||||||||||| |||||||||||||||||| | |||||| ||||| |
Sbjct 8 GATCAACGTATCTGATCACAGGATTCATAGGCATCGAATACAGTAACCCAACTTTAGCTT 67
Query 374 CCGCCATAAACAATATCACTCCTGCTCTTACCTTCATCCTCGCCATTATCTTCAGAATGG 433
| ||||| | |||||||| |||||| |||||||||||||||||||||||||||||||||
Sbjct 68 CAGCCATTAGCAATATCAATCCTGCAATTACCTTCATCCTCGCCATTATCTTCAGAATGG 127
Query 434 AAAAAGTATCTTTCAAAGAGAGGAGTAGTCTAGCCAAATTGATGGGGACGATA-TTGTCA 492
| |||| |||||||||||| | ||||||| |||||||| || | ||||| ||| || |||
Sbjct 128 AGAAAGCATCTTTCAAAGAAAAGAGTAGTGTAGCCAAAATGGTTGGGACAATAGTT-TCA 186
Query 493 CT-GATAGGTGCACTTGTGGTGATTT-TCTACCACGGTCCACGTGTCTTC-CTCGCATCT 549
|| | | || ||||||||||| | || ||||||| |||||||| |||||| | | |||||
Sbjct 187 CTAGTT-GGCGCACTTGTGGT-AGTTCTCTACCATGGTCCACGAGTCTTCACCC-CATCT 243
Query 550 TCTCCGCCCTATGTA-AACTTCCGTCAGTTTTCT-CCACCGTTGTCATCTTCAAACTCCG 607
|||||||| | | | |||| || |||| || || || ||||| ||||| ||||||||||
Sbjct 244 TCTCCGCCGTTTCAAGAACT-CCATCAGCTT-CTTCCGCCGTTATCATCCTCAAACTCCG 301
Query 608 ATTGGCTCATCGGTGGA-GCTCTTCTAACCATGCAAGG-CATATTCGTTTCTGTTTCTTT 665
||||| |||||||||| | |||| || |||| ||| | || ||||| ||||| ||||
Sbjct 302 ATTGGATCATCGGTGGTTG-TCTTTTAGCCAT-CAAAGACACCCTCGTTCCTGTTGCTTT 359
Query 666 CATTCTTCAGGCACATATAATGA-GTGTATATCCAGCAGCATTCA-GAGTCTCCTTTCTT 723
||||||||| ||||| ||||||| | |||| |||||| |||||| | ||||| ||||||
Sbjct 360 CATTCTTCAAGCACACATAATGAAGA-TATACCCAGCACCATTCACG-GTCTC-TTTCTT 416
Query 724 -TACA--CTGTATGTGTTTCAATCGTGACCTCGAC-GATTGGACTAGTAGTTGAAAAGAA 779
|| ||| || || ||||||| |||| || | ||| ||| | |||| ||| ||||
Sbjct 417 CTATTTTCTG-AT-TGCTTCAATCTTGACGTC-ATTGATCGGAATCGTAGCAGAAGAGAA 473
Query 780 CAACCCAAGCGTTTGGATCATTCATTTCGATATTACTTTGATTA-CAATTGTTACCATGG 838
||| || ||| | |||||||||||||| || ||||| ||| || || | ||| | ||
Sbjct 474 CAATCCGAGCATATGGATCATTCATTTTGACATTACATTGGTTTGCA-TAGTTGTCGGGG 532
Query 839 CAATAGT-AACTTCAGTATACTATGTGATTCAT-TCATGGACAGTACG-ACATAAAGGAC 895
|||| | || | ||| ||| || | ||||||| | ||| ||||||| | |||||||||
Sbjct 533 GAATATTTAA-TCCAGGATATTACGCGATTCATCTG-TGGGCAGTACGTA-ATAAAGGAC 589
Query 896 CTCTGTACTTAGCCATATTTAAACCTTTGTCCATTTTAATAGCAGTGGTTATGGGGGCCA 955
|| | |||||||| ||||| | |||||| || ||||||||||||||| ||||||| || |
Sbjct 590 CTGTTTACTTAGCTATATTCAGACCTTTATCGATTTTAATAGCAGTGATTATGGGAGCGA 649
Query 956 TTTTTCTCAATGATTCTCT-CTATCTCGGATGTTTGATCGGAGGAATTTTGATAACATTA 1014
||||||| |||| | | ||| |||||| ||||| ||||||| ||||||||| |||||
Sbjct 650 TTTTTCTTGGCGATT-TGTTCTACCTCGGAAGTTTGGTCGGAGGGATTTTGATATCATTA 708
Query 1015 GGCTTTTACGCTGTGATGTGGGGCAAAGCAAACGAAGAGAAG 1056
|| |||||| |||| |||||||| |||||||| |||||||||
Sbjct 709 GGGTTTTACACTGTAATGTGGGGAAAAGCAAAAGAAGAGAAG 750
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49140440013
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5