BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G28100.1
Length=1266
Score E
Sequences producing significant alignments: (Bits) Value
Ahg896727 jgi|Araly1|896727|Al_scaffold_0005_693 1598 0.0
Ahg484593 jgi|Araly1|484593|fgenesh2_kg.5__585__AT3G28080.1 1345 0.0
Ahg896729 jgi|Araly1|896729|Al_scaffold_0005_695 544 8e-154
> Ahg896727 jgi|Araly1|896727|Al_scaffold_0005_693
Length=1074
Score = 1598 bits (865), Expect = 0.0
Identities = 1007/1076 (94%), Gaps = 7/1076 (1%)
Strand=Plus/Plus
Query 53 ATGGCCCGGACAGTAAGTCTCTGGCGGAGAGAGGCCGTGTTCTTGACGGCCATGCTGGCG 112
|||||| ||||||||||||||||||||||||||||| ||||||||||||| |||||||||
Sbjct 1 ATGGCCGGGACAGTAAGTCTCTGGCGGAGAGAGGCCTTGTTCTTGACGGCGATGCTGGCG 60
Query 113 ACAGAAACCGGCGTAGTCGGAATAAGTACTTTGTTTAAAGTAGCAACTTCAAAGGGACTC 172
|| ||||||||| | || ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 61 ACTGAAACCGGCCTCGTTGGAATTAGTACTTTGTTTAAAGTAGCAACTTCAAAGGGACTC 120
Query 173 AATCTTTACGCTTTCCTCGGCTAttcttatcttcttgcttctctccttcttcttccttct 232
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 AATCTTTATGCTTTCCTCGGCTATTCTTATCTTCTTGCTTCTCTCCTTCTTCTTCCTTCT 180
Query 233 ctgttcttcACCGACAGGTCAAGATCACTTCCTCCACTAAGTTTGTCAATACTTTCTAAA 292
| |||||| || |||||||||||| |||||||||||||||||| |||||||||| ||||
Sbjct 181 TTTTTCTTCTCCAACAGGTCAAGATTACTTCCTCCACTAAGTTTCTCAATACTTTGTAAA 240
Query 293 ATAGGACTTCTTGGATTGCTAGGATCAATGTATGTGATCACAGGATACATAGGCATCGAA 352
||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct 241 ATAGGACTTCTTGGATTATTAGGATCAATGTATGTGATCACAGGATACATAGGCATCAAA 300
Query 353 TACAGCAGCCCAACCTTAGCCTCTGCCATTAGCAATATCACTCCTGCTCTTACCTTCATC 412
||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 301 TACAGCAACCCAACCTTAGCCTCTGCCATTAGCAATATCACTCCTGCTCTTACCTTTATC 360
Query 413 CTCGCCATTATCTTCAGAATGGAAAAAGTATCTTTCAAAGAAAGGAGCAGTGTAGCCAAA 472
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 361 CTCGCCATTATCTTCAGAATGGAAAAAGTATCTTTCAAAGAAAGGAGCAGTGTGGCCAAA 420
Query 473 GTGATGGGGACGATATTGTCGTTAATAGGCGCACTTGTTGTGGTTCTCTACCATGGTCCA 532
||||| || || |||||||| |||||||||||||||| |||||||||||||| ||||||
Sbjct 421 GTGATAGGAACAATATTGTCACTAATAGGCGCACTTGTGGTGGTTCTCTACCACGGTCCA 480
Query 533 CGTGTCTTTGTTGCATCTTCTCCGCCGTATATAAACTTCCGTCAGCTTTCTCCGCCGTTA 592
|||||||| ||||||| |||||||||||| ||||||||||||||||| |||| ||||||
Sbjct 481 CGTGTCTTCATTGCATCATCTCCGCCGTATCTAAACTTCCGTCAGCTTCCTCCACCGTTA 540
Query 593 TCATCTTCAAATTCAGATTGGCTCATCGGCGGAGCTCTTCTTACCATAAGAGACATCTTT 652
||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||
Sbjct 541 TCATCTTCAAATTCAGATTGGCTCATCGGCGGAGCTCTTCTAACCACAAGAGACATCTTC 600
Query 653 GTTTCTGTTTCTTTCATTCTCCAGGCAAAAATAATGAGT-ACATATCCAGCAGCATTCAC 711
|||||||| |||||||||||||||||| ||||||||||| | ||||||||||||||||||
Sbjct 601 GTTTCTGTATCTTTCATTCTCCAGGCACAAATAATGAGTGA-ATATCCAGCAGCATTCAC 659
Query 712 AGTCTCCTTCCTCTACATTGTATCGGTTTCAATCGTGACTTCAATGATTGGACTAGTAGT 771
||||||||||||||||| ||||| |||||||||||||||||| ||||||||||||||||
Sbjct 660 AGTCTCCTTCCTCTACACCGTATCAGTTTCAATCGTGACTTCAGTGATTGGACTAGTAGT 719
Query 772 GGAAAAGAACAATCCAAGCGTTTGGATCATTCGATTTGATATTACTTTGATAACAATTGT 831
||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct 720 GGAAAAGAACAATCCAAGCGTTTGGATCATTCGATTTGACATTACTTTGATTACAATTGT 779
Query 832 AACTATGGCAATAATTACTTCAGTATACTATGTGATCCATTCATGGACAGTACGTCACAA 891
|||||||||||| |||||||||||||||||||||| ||||||||||||||| |||||||
Sbjct 780 TACTATGGCAATAGTTACTTCAGTATACTATGTGATTCATTCATGGACAGTAAGTCACAA 839
Query 892 AGGACCTCTATACTTAGCGATATTTAAGCCTTTGTCGATTTTAATAGCGGTGGTTATGAG 951
|||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct 840 AGGACCTCTATACTTAGCGATATTTAAGCCATTGTCGATTTTAATAGCAGTGGTTATGAG 899
Query 952 CGCAGTTTTTCTCAACGATTCTCTCTATCTCGGATGTTTGATAGGAGGACTATTGATAAC 1011
|||||||||||||||||||||||||||||| ||||||||||| |||||| | ||||||||
Sbjct 900 CGCAGTTTTTCTCAACGATTCTCTCTATCTTGGATGTTTGATCGGAGGAATTTTGATAAC 959
Query 1012 GTTGGGGTTTTACGCTGTGATGTGGGGTAAAGCAAACGAAGAGAAAGATCAATTGTTGTT 1071
||||||||||||||||||||||||||| ||||||||||||||||| ||||| ||||||
Sbjct 960 GTTGGGGTTTTACGCTGTGATGTGGGGCAAAGCAAACGAAGAGAAGGATCA---GTTGTT 1016
Query 1072 AGTTTCAGGAAAA-GAGAGAACCCCTCTTCTATTGAACGGCTAAAATGGCCAAATT 1126
| |||| |||||| |||| |||||||||||||||||||||||| |||| |||||||
Sbjct 1017 ACTTTC-GGAAAAAGAGAAAACCCCTCTTCTATTGAACGGCTACAATGACCAAATT 1071
> Ahg484593 jgi|Araly1|484593|fgenesh2_kg.5__585__AT3G28080.1
Length=1144
Score = 1345 bits (728), Expect = 0.0
Identities = 970/1086 (89%), Gaps = 20/1086 (2%)
Strand=Plus/Plus
Query 51 TAATGGCCCGGA-CAGTAAGTCTCTGGCGGAGAGAGGCCGTGTTCTTGACGGCCATGCTG 109
|||||| ||||| | |||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 21 TAATGG-CCGGAGCCGTAAGTCTTTGGCGGAGAGAGGCCGTGTTCTTGACGGCAATGCTA 79
Query 110 GC-GACAGAAACCGGCGTAGTCGGAATAAGTACTTTGTTTAAAGTAGCAACTTCAAAGGG 168
|| | | |||||| |||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 80 GCGGTC-GAAACCAGCGTCGTCGGAATAAGTACTTTGTTTAAAGTAGCAACTTCAAAGGG 138
Query 169 ACTCAATC-TTTA-CGCTTTCCTCGGCTAttcttatcttcttgcttctctccttcttctt 226
|||||| | |||| | |||||||||||||||| |||||||| |||||||| |||||||||
Sbjct 139 ACTCAA-CATTTATC-CTTTCCTCGGCTATTCCTATCTTCTAGCTTCTCTTCTTCTTCTT 196
Query 227 ccttctctgttcttcACCGACAGGTCAAGATCACTTCCTCCACTAAGTTTGTCAATACTT 286
|||||||| ||||||||| |||| |||||||||||||||||||||| | | ||||||||
Sbjct 197 CCTTCTCTTTTCTTCACCTACAGTTCAAGATCACTTCCTCCACTAAATATCTCAATACTC 256
Query 287 TCTAAAATAGGACTTCTTGGATTGCTAGGATCAATGTATGTGATCACAGGATACATAGGC 346
| ||| || |||||||||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct 257 TGTAAGATCGGACTTCTTGGATTTCTAGGATCAATGTATGTAATCACAGGATACATAGGC 316
Query 347 ATCGAATACAGCAGCCCAACCTTAGCCTCTGCCATTAGCAATATCACTCCTGCTCTTACC 406
|||||||||||||||||||| |||||||| ||||| | ||||||||||||||||||||||
Sbjct 317 ATCGAATACAGCAGCCCAACATTAGCCTCCGCCATAAACAATATCACTCCTGCTCTTACC 376
Query 407 TTCATCCTCGCCATTATCTTCAGAATGGAAAAAGTATCTTTCAAAGAAAGGAGCAGTGTA 466
|||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 377 TTCATCCTCGCCGTTATCTTCAGAATGGAAAAAGTATCATTCAAAGAAAGGAGCAGTGTA 436
Query 467 GCCAAAGTGATGGGGACGATATTGTCGTTAATAGGCGCACTTGTTGTGGTTCTCTACCAT 526
|||||||||||||||||| || |||| |||||||| |||||||| ||| || ||||||
Sbjct 437 GCCAAAGTGATGGGGACGCTACTGTCATTAATAGGTGCACTTGTGGTGATTTTCTACCGC 496
Query 527 GGTCCACGTGTCTTTGTTGCATCTTCTCCGCCGTATATAAACTTCCGTCAGCTTTCTCCG 586
||||||||||||| || |||||||||||||||||| |||||||||| |||| ||| ||
Sbjct 497 GGTCCACGTGTCTCCGTAGCATCTTCTCCGCCGTATCTAAACTTCCGACAGCATTCCCCA 556
Query 587 CCGTTATCATCTTCAAATTCAGATTGGCTCATCGGCGGAGCTCTTCTTACCATA-AGAGA 645
||||| ||||||||||| || || ||||||||||| ||||||||||| |||||| | ||
Sbjct 557 CCGTTGTCATCTTCAAACTCCGACTGGCTCATCGGAGGAGCTCTTCTAACCATACA-AGG 615
Query 646 CATCTTTGTTTCTGTTTCTTTCATTCTCCAGGCAAAAATAATGAGTACA-TATCCAGCAG 704
|||||| |||||||| |||||||||||||||||| | ||||||||| | ||||||||||
Sbjct 616 CATCTTCGTTTCTGTCTCTTTCATTCTCCAGGCACATATAATGAGT-GAGTATCCAGCAG 674
Query 705 CATTCACAGTCTCCTTCCTCTACATTGTATCG-GTTTCAATCGTGACTTCAATGATTGGA 763
|||| | ||||||||| || |||| ||||| | |||||||||||||| |||| |||||||
Sbjct 675 CATTTAGAGTCTCCTTTCTTTACACTGTAT-GTGTTTCAATCGTGACCTCAACGATTGGA 733
Query 764 CTAGTAGTGGAAAAGAACAATCCAAGCGTTTGGATCATTCGA-TTTGATATTACTTTGAT 822
||||||| ||||||||||||||||||||||||||||||| | |||||||||||||||||
Sbjct 734 CTAGTAGCCGAAAAGAACAATCCAAGCGTTTGGATCATTC-ATTTTGATATTACTTTGAT 792
Query 823 AACAATTGTAACTATGGCAATAATTACTTCAGTATACTATGTGATCCATTCATGGACAGT 882
|| ||||| |||||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 793 TACGATTGTTACTATGGCAATAATAACTTCAGTATACTATGTGATTCATTCATGGACAGT 852
Query 883 ACGTCACAAAGGACCTCTATACTTAGCGATATTTAAGCCTTTGTCGATTTTAATAGCGGT 942
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 853 ACGACACAAAGGACCTCTATACTTAGCGATATTTAAGCCTTTGTCGATTTTAATAGCAGT 912
Query 943 GGTTATGAGCG-CAGTTTTTCTCAACGATTCTCTCTATCTCGGATGTTTGATAGGAGGAC 1001
||||||| | | || ||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 913 GGTTATGGGGGGCA-TTTTTCTCAACGATTCTCTCTATCTCGGATGTTTGATCGGAGGAA 971
Query 1002 TATTGATAACGTTGGGGTTTTACGCTGTGATGTGGGGTAAAGCAAACGAAGAGAAAGATC 1061
| |||||| | || || || ||||||||||||||||| ||||||||||||||||| || |
Sbjct 972 TTTTGATATCATTAGGCTTCTACGCTGTGATGTGGGGCAAAGCAAACGAAGAGAAGGACC 1031
Query 1062 AATTGTTGTTAGTTTCAGGAAAAGAGAGAACCCCTCTTCTATTGAACGGCTAA-AATGGC 1120
| ||||| | | |||| |||||||||| ||||||||||||||||| ||| || || | |
Sbjct 1032 AGTTGTTATCATTTTCCGGAAAAGAGAAAACCCCTCTTCTATTGAGTGGC-AAGAACGAC 1090
Query 1121 CAAATT 1126
||||||
Sbjct 1091 CAAATT 1096
> Ahg896729 jgi|Araly1|896729|Al_scaffold_0005_695
Length=816
Score = 544 bits (294), Expect = 8e-154
Identities = 622/776 (80%), Gaps = 40/776 (5%)
Strand=Plus/Plus
Query 315 GATCAATGTATGTGATCACAGGATACATAGGCATCGAATACAGCAGCCCAACCTTAGCCT 374
|||||| |||| |||||||||||| |||||||||||||||||| | |||||| ||||| |
Sbjct 8 GATCAACGTATCTGATCACAGGATTCATAGGCATCGAATACAGTAACCCAACTTTAGCTT 67
Query 375 CTGCCATTAGCAATATCACTCCTGCTCTTACCTTCATCCTCGCCATTATCTTCAGAATGG 434
| |||||||||||||||| |||||| |||||||||||||||||||||||||||||||||
Sbjct 68 CAGCCATTAGCAATATCAATCCTGCAATTACCTTCATCCTCGCCATTATCTTCAGAATGG 127
Query 435 AAAAAGTATCTTTCAAAGAAAGGAGCAGTGTAGCCAAAGTGATGGGGACGATA-TTGTCG 493
| |||| |||||||||||||| ||| |||||||||||| || | ||||| ||| || ||
Sbjct 128 AGAAAGCATCTTTCAAAGAAAAGAGTAGTGTAGCCAAAATGGTTGGGACAATAGTT-TCA 186
Query 494 TTAATAGGCGCACTTGTTGTGGTTCTCTACCATGGTCCACGTGTCTTTGTTGCATCTTCT 553
|| | ||||||||||| || |||||||||||||||||||| ||||| ||||||||
Sbjct 187 CTAGTTGGCGCACTTGTGGTAGTTCTCTACCATGGTCCACGAGTCTTCACCCCATCTTCT 246
Query 554 CCGCCGTAT-ATA-AACTTCCGTCAGCTTTCT-CCGCCGTTATCATCTTCAAATTCAGAT 610
||||||| | | | |||| || ||||||| || |||||||||||||| ||||| || |||
Sbjct 247 CCGCCGTTTCA-AGAACT-CCATCAGCTT-CTTCCGCCGTTATCATCCTCAAACTCCGAT 303
Query 611 TGGCTCATCGGCGGA-GCTCTTCTTA-CCAT-AAGAGACATCTTTGTTTCTGTTTCTTTC 667
||| ||||||| || | |||| ||| |||| || ||||| | | ||| ||||| |||||
Sbjct 304 TGGATCATCGGTGGTTG-TCTT-TTAGCCATCAA-AGACACCCTCGTTCCTGTTGCTTTC 360
Query 668 ATTCTCCAGGCAAAAATAATGA-GTACATATCCAGCAGCATTCACAGTCTCCTTCCTCTA 726
||||| || ||| | ||||||| | | ||| |||||| ||||||| ||||| ||| ||||
Sbjct 361 ATTCTTCAAGCACACATAATGAAG-ATATACCCAGCACCATTCACGGTCTCTTTCTTCTA 419
Query 727 CATTGT-ATCGGTTTCAATCGTGACTTCAATGATTGGACTAGTAGTGGAAAAGAACAATC 785
|| | || | || ||||| |||| ||| |||| ||| | |||| ||| |||||||||
Sbjct 420 TTTTCTGATTGCTT-CAATCTTGACGTCATTGATCGGAATCGTAGCAGAAGAGAACAATC 478
Query 786 CAAGCGTTTGGATCATTCGATTT-GATATTACTTTGATAA-CA-A-TTGTAACTATGGCA 841
| ||| | |||||||||| |||| || ||||| ||| | || | |||| | || |
Sbjct 479 CGAGCATATGGATCATTC-ATTTTGACATTACATTGGTTTGCATAGTTGT--CGGGGG-A 534
Query 842 ATAATTACTTCAGTATACTATGTGATCCAT-TCATGGACAGTACGTCACAAAGGACCTCT 900
||| ||| | ||| ||| || | ||| ||| | ||| |||||||| | ||||||||| |
Sbjct 535 ATATTTAATCCAGGATATTACGCGATTCATCTG-TGGGCAGTACGTAATAAAGGACCTGT 593
Query 901 ATACTTAGCGATATTTA-AGCCTTTGTCGATTTTAATAGCGGTGGTTATG--AGCGCAGT 957
|||||||| ||||| | | ||||| |||||||||||||| ||| ||||| |||| | |
Sbjct 594 TTACTTAGCTATATTCAGA-CCTTTATCGATTTTAATAGCAGTGATTATGGGAGCG-A-T 650
Query 958 TTTTCTCAACGATTCTCT-CTATCTCGGATGTTTGATAGGAGG-ACTATTGATAACGTTG 1015
|||||| ||||| | | ||| |||||| ||||| | ||||| | | |||||| | ||
Sbjct 651 TTTTCTTGGCGATT-TGTTCTACCTCGGAAGTTTGGTCGGAGGGATT-TTGATATCATTA 708
Query 1016 GGGTTTTACGCTGTGATGTGGGGTAAAGCAAACGAAGAGAAAGA-TCAATTGTTGT 1070
||||||||| |||| |||||||| |||||||| |||||||| || |||||||||||
Sbjct 709 GGGTTTTACACTGTAATGTGGGGAAAAGCAAAAGAAGAGAA-GACTCAATTGTTGT 763
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47310539997
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5