BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G28130.2 Length=1346 Score E Sequences producing significant alignments: (Bits) Value Ahg896729 jgi|Araly1|896729|Al_scaffold_0005_695 1297 0.0 Ahg896728 jgi|Araly1|896728|Al_scaffold_0005_694 403 2e-111 > Ahg896729 jgi|Araly1|896729|Al_scaffold_0005_695 Length=816 Score = 1297 bits (702), Expect = 0.0 Identities = 774/809 (96%), Gaps = 4/809 (0%) Strand=Plus/Plus Query 333 TCAACGTATCTGATCACAGGATTCATAGGCATCGAATACAGCAACCCAACCTTAGCTTCA 392 ||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||| Sbjct 10 TCAACGTATCTGATCACAGGATTCATAGGCATCGAATACAGTAACCCAACTTTAGCTTCA 69 Query 393 GCCATTAGCAATATCAATCCTGCCATTACCTTCATCCTTGCCATTATCTTCAGAATGGAG 452 ||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||| Sbjct 70 GCCATTAGCAATATCAATCCTGCAATTACCTTCATCCTCGCCATTATCTTCAGAATGGAG 129 Query 453 AAAGCATCTTTCAAAGAAAAGAGTAGTGTAGCCAAAATGGTTGGGACAATAGTTTCACTA 512 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 130 AAAGCATCTTTCAAAGAAAAGAGTAGTGTAGCCAAAATGGTTGGGACAATAGTTTCACTA 189 Query 513 GTTGGCGCACTTGTGGTAGTTCTCTACCATGGTCCACGAGTCTTCACCCCATCTTCTCCA 572 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 190 GTTGGCGCACTTGTGGTAGTTCTCTACCATGGTCCACGAGTCTTCACCCCATCTTCTCCG 249 Query 573 CCATTTCCACAACTCCGTCAGCTTCTTTTGCCGTTATCATCCTCAAACTCGGATTGGATC 632 || |||| | |||||| |||||||||| ||||||||||||||||||||| ||||||||| Sbjct 250 CCGTTTCAAGAACTCCATCAGCTTCTTCCGCCGTTATCATCCTCAAACTCCGATTGGATC 309 Query 633 ATCGGTGGTTGTCTTTTAGCCATCAAAGACACCCTCGTTCCTGTTGCTTTTATTCTTCAA 692 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 310 ATCGGTGGTTGTCTTTTAGCCATCAAAGACACCCTCGTTCCTGTTGCTTTCATTCTTCAA 369 Query 693 GCACATATAATGAAGTTATATCCAGCACCATTCACGGTCTCTTTCTTCTATTTTCTGATT 752 ||||| ||||||||| |||| ||||||||||||||||||||||||||||||||||||||| Sbjct 370 GCACACATAATGAAGATATACCCAGCACCATTCACGGTCTCTTTCTTCTATTTTCTGATT 429 Query 753 GCTTCAATCTTGACGTCATTGATCGGAATCGTAGCAGAAAAGAACAATCCGAGCATATGG 812 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 430 GCTTCAATCTTGACGTCATTGATCGGAATCGTAGCAGAAGAGAACAATCCGAGCATATGG 489 Query 813 ATCATTCATTTTGACATTACATTAGTTTGCATAGTTGTTGGGGGAATATTTAATCCAGGA 872 ||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||| Sbjct 490 ATCATTCATTTTGACATTACATTGGTTTGCATAGTTGTCGGGGGAATATTTAATCCAGGA 549 Query 873 TATTACGCGATTCATCTGTGGGCAGTACGTAATAAAGGACCTGTTTACTTAGCTATATTC 932 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 550 TATTACGCGATTCATCTGTGGGCAGTACGTAATAAAGGACCTGTTTACTTAGCTATATTC 609 Query 933 AGACCTTTATCGATTTTAATAGCAGTGATTATGGGAGCGATTTTTCTTGGAGATTCTTTT 992 |||||||||||||||||||||||||||||||||||||||||||||||||| |||| | || Sbjct 610 AGACCTTTATCGATTTTAATAGCAGTGATTATGGGAGCGATTTTTCTTGGCGATT-TGTT 668 Query 993 -TACCTAGGAAGTTTGGTCGGAGGGATTTTGATATCGTTAGGGTTTTACACTGTGATGTG 1051 ||||| ||||||||||||||||||||||||||||| ||||||||||||||||| ||||| Sbjct 669 CTACCTCGGAAGTTTGGTCGGAGGGATTTTGATATCATTAGGGTTTTACACTGTAATGTG 728 Query 1052 GGGAAAAGCAAAAGAAGGGAAGACTCAGTTCTTGTCGCTGTCAGAGGAAACTCCTCTTCT 1111 ||||||||||||||||| ||||||||| || |||||||| ||||||||| |||||||||| Sbjct 729 GGGAAAAGCAAAAGAAGAGAAGACTCAATTGTTGTCGCTTTCAGAGGAAGCTCCTCTTCT 788 Query 1112 AGA-CGAAAACATAGACGACCGAATATAG 1139 | | | ||||||||||||||| ||||||| Sbjct 789 A-ATCAAAAACATAGACGACCAAATATAG 816 > Ahg896728 jgi|Araly1|896728|Al_scaffold_0005_694 Length=267 Score = 403 bits (218), Expect = 2e-111 Identities = 250/265 (94%), Gaps = 3/265 (1%) Strand=Plus/Plus Query 72 ATGGCCTCCATTACTCTCCGTCGGAGAGACGCCGTGTTATTGACGGCCATGTTGGCGACT 131 ||||||||||||| ||||||||||||||||||||||||||||||||| ||||| |||||| Sbjct 1 ATGGCCTCCATTAGTCTCCGTCGGAGAGACGCCGTGTTATTGACGGCGATGTTAGCGACT 60 Query 132 GAAACCGGAAATGTGGCTATGAATACTTTGTTTAAAGCAGC-G--ACTTCAAAAGGCCTT 188 ||||||||||| ||||| ||||||||| ||||||||||||| | ||||||||||||||| Sbjct 61 GAAACCGGAAACGTGGCGATGAATACTCTGTTTAAAGCAGCAGCTACTTCAAAAGGCCTT 120 Query 189 AATTCTTATACCTTCCTCATCTATTCTTATCTCATTGGCTCTATTGTTCTTCTTCCTTCT 248 ||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||| Sbjct 121 AATTCTTATACCTTCCTCATCTACTCTTATCTCATTGGCTCTCTTGTTCTTCTTCCTTCT 180 Query 249 CACATCTTCTCTTATAGGTCAAGATCACTTCCTTCACTAAGTCTTTCAATTCTCTGTAAA 308 ||||||||||||||||||||||||||||||||| || ||||| ||||||| ||||||||| Sbjct 181 CACATCTTCTCTTATAGGTCAAGATCACTTCCTCCATTAAGTTTTTCAATACTCTGTAAA 240 Query 309 ATTGGAGTTCTTGGGCTGCTAGGGT 333 ||||||||||||||||||||||||| Sbjct 241 ATTGGAGTTCTTGGGCTGCTAGGGT 265 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 50360373357 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5