BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G28130.2
Length=1346
Score E
Sequences producing significant alignments: (Bits) Value
Ahg896729 jgi|Araly1|896729|Al_scaffold_0005_695 1297 0.0
Ahg896728 jgi|Araly1|896728|Al_scaffold_0005_694 403 2e-111
> Ahg896729 jgi|Araly1|896729|Al_scaffold_0005_695
Length=816
Score = 1297 bits (702), Expect = 0.0
Identities = 774/809 (96%), Gaps = 4/809 (0%)
Strand=Plus/Plus
Query 333 TCAACGTATCTGATCACAGGATTCATAGGCATCGAATACAGCAACCCAACCTTAGCTTCA 392
||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||
Sbjct 10 TCAACGTATCTGATCACAGGATTCATAGGCATCGAATACAGTAACCCAACTTTAGCTTCA 69
Query 393 GCCATTAGCAATATCAATCCTGCCATTACCTTCATCCTTGCCATTATCTTCAGAATGGAG 452
||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||
Sbjct 70 GCCATTAGCAATATCAATCCTGCAATTACCTTCATCCTCGCCATTATCTTCAGAATGGAG 129
Query 453 AAAGCATCTTTCAAAGAAAAGAGTAGTGTAGCCAAAATGGTTGGGACAATAGTTTCACTA 512
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 130 AAAGCATCTTTCAAAGAAAAGAGTAGTGTAGCCAAAATGGTTGGGACAATAGTTTCACTA 189
Query 513 GTTGGCGCACTTGTGGTAGTTCTCTACCATGGTCCACGAGTCTTCACCCCATCTTCTCCA 572
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 190 GTTGGCGCACTTGTGGTAGTTCTCTACCATGGTCCACGAGTCTTCACCCCATCTTCTCCG 249
Query 573 CCATTTCCACAACTCCGTCAGCTTCTTTTGCCGTTATCATCCTCAAACTCGGATTGGATC 632
|| |||| | |||||| |||||||||| ||||||||||||||||||||| |||||||||
Sbjct 250 CCGTTTCAAGAACTCCATCAGCTTCTTCCGCCGTTATCATCCTCAAACTCCGATTGGATC 309
Query 633 ATCGGTGGTTGTCTTTTAGCCATCAAAGACACCCTCGTTCCTGTTGCTTTTATTCTTCAA 692
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 310 ATCGGTGGTTGTCTTTTAGCCATCAAAGACACCCTCGTTCCTGTTGCTTTCATTCTTCAA 369
Query 693 GCACATATAATGAAGTTATATCCAGCACCATTCACGGTCTCTTTCTTCTATTTTCTGATT 752
||||| ||||||||| |||| |||||||||||||||||||||||||||||||||||||||
Sbjct 370 GCACACATAATGAAGATATACCCAGCACCATTCACGGTCTCTTTCTTCTATTTTCTGATT 429
Query 753 GCTTCAATCTTGACGTCATTGATCGGAATCGTAGCAGAAAAGAACAATCCGAGCATATGG 812
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 430 GCTTCAATCTTGACGTCATTGATCGGAATCGTAGCAGAAGAGAACAATCCGAGCATATGG 489
Query 813 ATCATTCATTTTGACATTACATTAGTTTGCATAGTTGTTGGGGGAATATTTAATCCAGGA 872
||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||
Sbjct 490 ATCATTCATTTTGACATTACATTGGTTTGCATAGTTGTCGGGGGAATATTTAATCCAGGA 549
Query 873 TATTACGCGATTCATCTGTGGGCAGTACGTAATAAAGGACCTGTTTACTTAGCTATATTC 932
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 550 TATTACGCGATTCATCTGTGGGCAGTACGTAATAAAGGACCTGTTTACTTAGCTATATTC 609
Query 933 AGACCTTTATCGATTTTAATAGCAGTGATTATGGGAGCGATTTTTCTTGGAGATTCTTTT 992
|||||||||||||||||||||||||||||||||||||||||||||||||| |||| | ||
Sbjct 610 AGACCTTTATCGATTTTAATAGCAGTGATTATGGGAGCGATTTTTCTTGGCGATT-TGTT 668
Query 993 -TACCTAGGAAGTTTGGTCGGAGGGATTTTGATATCGTTAGGGTTTTACACTGTGATGTG 1051
||||| ||||||||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct 669 CTACCTCGGAAGTTTGGTCGGAGGGATTTTGATATCATTAGGGTTTTACACTGTAATGTG 728
Query 1052 GGGAAAAGCAAAAGAAGGGAAGACTCAGTTCTTGTCGCTGTCAGAGGAAACTCCTCTTCT 1111
||||||||||||||||| ||||||||| || |||||||| ||||||||| ||||||||||
Sbjct 729 GGGAAAAGCAAAAGAAGAGAAGACTCAATTGTTGTCGCTTTCAGAGGAAGCTCCTCTTCT 788
Query 1112 AGA-CGAAAACATAGACGACCGAATATAG 1139
| | | ||||||||||||||| |||||||
Sbjct 789 A-ATCAAAAACATAGACGACCAAATATAG 816
> Ahg896728 jgi|Araly1|896728|Al_scaffold_0005_694
Length=267
Score = 403 bits (218), Expect = 2e-111
Identities = 250/265 (94%), Gaps = 3/265 (1%)
Strand=Plus/Plus
Query 72 ATGGCCTCCATTACTCTCCGTCGGAGAGACGCCGTGTTATTGACGGCCATGTTGGCGACT 131
||||||||||||| ||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 1 ATGGCCTCCATTAGTCTCCGTCGGAGAGACGCCGTGTTATTGACGGCGATGTTAGCGACT 60
Query 132 GAAACCGGAAATGTGGCTATGAATACTTTGTTTAAAGCAGC-G--ACTTCAAAAGGCCTT 188
||||||||||| ||||| ||||||||| ||||||||||||| | |||||||||||||||
Sbjct 61 GAAACCGGAAACGTGGCGATGAATACTCTGTTTAAAGCAGCAGCTACTTCAAAAGGCCTT 120
Query 189 AATTCTTATACCTTCCTCATCTATTCTTATCTCATTGGCTCTATTGTTCTTCTTCCTTCT 248
||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||
Sbjct 121 AATTCTTATACCTTCCTCATCTACTCTTATCTCATTGGCTCTCTTGTTCTTCTTCCTTCT 180
Query 249 CACATCTTCTCTTATAGGTCAAGATCACTTCCTTCACTAAGTCTTTCAATTCTCTGTAAA 308
||||||||||||||||||||||||||||||||| || ||||| ||||||| |||||||||
Sbjct 181 CACATCTTCTCTTATAGGTCAAGATCACTTCCTCCATTAAGTTTTTCAATACTCTGTAAA 240
Query 309 ATTGGAGTTCTTGGGCTGCTAGGGT 333
|||||||||||||||||||||||||
Sbjct 241 ATTGGAGTTCTTGGGCTGCTAGGGT 265
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50360373357
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5