BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G28140.1
Length=816
Score E
Sequences producing significant alignments: (Bits) Value
Ahg484599 jgi|Araly1|484599|fgenesh2_kg.5__591__AT3G28140.1 1199 0.0
Ahg947758 jgi|Araly1|947758|scaffold_703987.1 503 9e-142
> Ahg484599 jgi|Araly1|484599|fgenesh2_kg.5__591__AT3G28140.1
Length=777
Score = 1199 bits (649), Expect = 0.0
Identities = 739/781 (95%), Gaps = 12/781 (2%)
Strand=Plus/Plus
Query 41 TCTCAGGGTTTCTCGGTTCACCAAAAACTCCTAAATCTCTCTCTCAGATCGTCACTACCC 100
||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 TCTTAGGGTTTCTCTCTTCACCAAAAACTCCTAAATCTCTCTCTCAGATCGTCACTACCC 60
Query 101 TTTTCAATTCCATCCTCAATCTTCAAAATTCCCAAACGAAATCAA-CAAAAGATGTCG-C 158
||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||| |
Sbjct 61 TTTTCAATTCCATCCTCAATCTTCAAAATCCCCAAACGAAATCAATCAAAAGATGTCGTC 120
Query 159 A-A-GGCTACGCAATCGAGCTCTACTTCGATCCAGCACTCGAGAACCAAGTCTTGAAAGC 216
| | |||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 121 ACAAGGCTACGCAATCGAGCTCTACTTCGATCCATCACTCGAGAACCAAGTCTTGAAAGC 180
Query 217 TTGGAACGTCTTCGCTCGTCGTCAAATCAGTACATATCTAATCAACAACGAGTCTCGTCC 276
|||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||
Sbjct 181 TTGGAACGTCTTCGCTCGTCGTCAAATCAGTACAAACCTAATCAACAACGAGTCTCGTCC 240
Query 277 ACACATAACCTTATTCTCAACTACTTCATCCATCGATTCAACAAAGCTTGAACCAATCAT 336
||||||||| ||||||||| | |||||| |||||||||||||||||||||||||||| |
Sbjct 241 ACACATAACTTTATTCTCA--T-CTTCATTCATCGATTCAACAAAGCTTGAACCAATCTT 297
Query 337 CAAATCATTCTCATCTAAACAAGAACCAATCTCACTCTCTTTCTCTTCAATAGGAAGCTT 396
|||||||||||||| ||||||||||||||| | ||||||||||||||||| ||||||||
Sbjct 298 GAAATCATTCTCATCGAAACAAGAACCAATCGCTCTCTCTTTCTCTTCAATTGGAAGCTT 357
Query 397 TTCTAGTGACGACAATGCTCTGTTTCTTTCGCCGACGCCGTCTCTTTCGCTTATTCAGCT 456
|||||||||| ||||||||||||||||||||||||| ||||||||||||||| |||||||
Sbjct 358 TTCTAGTGACAACAATGCTCTGTTTCTTTCGCCGACACCGTCTCTTTCGCTTCTTCAGCT 417
Query 457 TCAGCTTCAGTTATGTGAAGTGATTAAGAAAGAAGGGTTTGAGATTGGTGAAGAGTATCG 516
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 418 TCAGGTTCAGTTATGTGAAGTGATTAAGAAAGAAGGGTTTGAGATTGGTGAAGAGTATCG 477
Query 517 TGTTGATTCTTGGGTTCCGTTTTGTTC-TGTGGCTGTTGATGTTCCTAAGTCACGTATCT 575
||||||||||||||||||||||||| | ||||||| ||||||||||||||||||||||||
Sbjct 478 TGTTGATTCTTGGGTTCCGTTTTGT-CATGTGGCTATTGATGTTCCTAAGTCACGTATCT 536
Query 576 CTGAAGGGTTTTTGGTTTTGAGAGATTTGAAGCTTCTTGTTTATGGTTATGCTATGGATA 635
|||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||
Sbjct 537 CTGAAGGGTTTTTGGTTTTGAGAGATTTGAAGCTTCCTGTGAATGGTTATGCTATGGATA 596
Query 636 TTGGTCTTGTTGAGTTTTCTCCTGTTCGTGAAGTTTTCTCTTTTGGTCTTGGTAACAATT 695
||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 597 TTGGTCTTGTTAAGTTTTCTCCTGTTCGTGAAGTCTTCTCTTTTGGTCTTGGTAACAATT 656
Query 696 TGGAATCTTGATATGAA--TGTTTAGCTTTCAGCTAGTAACAATCTGATTATGTAATTCC 753
|||| |||||||||||| ||||||||||| || ||||||||||||||||||||||||||
Sbjct 657 TGGAGTCTTGATATGAAAATGTTTAGCTTTGAGTTAGTAACAATCTGATTATGTAATTCC 716
Query 754 TTTGGTTT-AGTTGACAAAAGTTTCGAGCTTGATGGAACATTATAGAAGCAATTATGTTT 812
|||||||| |||| |||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 717 TTTGGTTTTAGTTAACAAAAGTTTCGAGCTTGATGGAACAGTATAGAAGCAATTATGTTT 776
Query 813 A 813
|
Sbjct 777 A 777
> Ahg947758 jgi|Araly1|947758|scaffold_703987.1
Length=594
Score = 503 bits (272), Expect = 9e-142
Identities = 486/584 (83%), Gaps = 36/584 (6%)
Strand=Plus/Plus
Query 150 AGATGTC-GCAAGGCTACGCAATCGAGCTCTACTTCGATCCAGCACTCGAGAACCAAGTC 208
||||||| | ||||||||||||||||||| |||||||||||||||||||| ||||||||
Sbjct 20 AGATGTCAG-AAGGCTACGCAATCGAGCTTTACTTCGATCCAGCACTCGAAAACCAAGTT 78
Query 209 TTGAAAGCTTGGAACGTCTTCGCTCGTCGTCAAATCAGTA-CATATCTAATCAACAAC-G 266
|||||||| ||||||| ||||||||| ||||||||||||| || || | |||||| || |
Sbjct 79 TTGAAAGCATGGAACGCCTTCGCTCGCCGTCAAATCAGTACCAAAT-TGATCAAC-ACTG 136
Query 267 AGTCTCGTCCACACATAAC-CTTATTCTCAACTACTTCATCCATCGATTCAACAAAG-CT 324
||||||||||||| ||||| | | |||| |||| || | | |||||||||| || ||
Sbjct 137 AGTCTCGTCCACATATAACAC-TCTTCT---CTACCTCTTTCTTCGATTCAAC-GAGACT 191
Query 325 TGAA-CCAATCATC-AAATCATTC-TCATCTAAACAAGAACCAATCTC-ACTCTCTTTCT 380
||| || ||||| ||| | ||| | ||| || |||||||||||||| | |||| ||||
Sbjct 192 CGAATCC-GTCATCAAAAAC-TTCGT-ATCGAAGCAAGAACCAATCTCGA-TCTCGTTCT 247
Query 381 CTTCAATAGGAAGCTTTTCTAGTGACGACAATGCT-CTGTTTCTTTCGCCGACGCCGTCT 439
| | || || | ||| ||||| ||| |||| | | |||||||| || ||||| ||||||
Sbjct 248 CCACTATCGGCACCTTCTCTAGCGACAACAACG-TACTGTTTCTATCTCCGACACCGTCT 306
Query 440 CTTTCGCTTATTCAGCTT-CAGCT-TCAGTTATGTGA-AGTGATTAAGAAAGAAGGGT-T 495
|| |||||| ||||| || ||| | |||||||||||| | ||| ||||||||| | |
Sbjct 307 CTCTCGCTTCTTCAG-TTACAG-TCTCAGTTATGTGACA-CGATGAAGAAAGAA-TCTGT 362
Query 496 TGAGATTGGTGAAGAGTATCGTGTTGATTCTTGGGTTCCGTTTTGTTCTGTGGCTGTTGA 555
||||||||||||||| |||||||||||||||||||||||||||||| |||||||| ||||
Sbjct 363 TGAGATTGGTGAAGATTATCGTGTTGATTCTTGGGTTCCGTTTTGTCCTGTGGCTCTTGA 422
Query 556 TGTTCCTAAGTCACGTATCTCTGAAGGGTTT-T-TGGTTTTGAGAGATTTGAAGCTTCTT 613
|||||||||||||||||| |||| || ||| | || | |||||||||||||||||||
Sbjct 423 TGTTCCTAAGTCACGTATGGCTGA-GGCTTTCTCTG-TGTTGAGAGATTTGAAGCTTCCG 480
Query 614 GTTTATGGTTATGCTATGGATATTGGTCTTGTTGAGTTTTCTCCTGTTCGTGAAGTTTTC 673
|| ||||||||| |||||| ||||||||||||||||||||||| ||||||||||| |||
Sbjct 481 GTGAATGGTTATGGTATGGAGATTGGTCTTGTTGAGTTTTCTCCGGTTCGTGAAGTCTTC 540
Query 674 TCTTTTGGTCTTGGTAACAATTTGGAATCTTGATATGAA-TGTT 716
|| ||| ||||||||||| |||||| ||||||| || | ||||
Sbjct 541 TCATTTCCTCTTGGTAACACTTTGGAGTCTTGATCTGTAGTGTT 584
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30155227347
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5